mRNA_P-littoralis_Contig1254.9.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1254.9.2
Unique NamemRNA_P-littoralis_Contig1254.9.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig1254.9.2 vs. uniprot
Match: A0A6H5KDQ3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDQ3_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 3.900e-33
Identity = 101/287 (35.19%), Postives = 148/287 (51.57%), Query Frame = 2 
Query:   80 QGPAVTTRGTCERTMMVGAK*HVLEQTWRRRREQGLQLRTAVFDAQSPTREVGRTYAFSDANEQTLSTLTLAKANVTLQNRRDKYNRAVVKNDDPLTRREKMRVI-CPVIAQLHPGSVRNRTRAGESKLPADPEVTEQHPSGEDDDLDVSPASLPGMKAMTTDGLLEHLASLGIPAASQLQEVCAEQRE---LTGGLRNGIRAARVHARTNEGRQVYQTVLAAAARDGDG---PSRLTARHKAELLGVDPNLMEDAKQRAESLWTDVRPAAAMGEDKYWFHPRSKRT 919
            QGPAVT  G C R M  G   + +   W    E+G++LRT + D++   R+      + +A+E  LS L   KA+  +  +R+   +  +            RV+ CPVIA +       RTR+  +  PA       +P  + D  D S + L  M++M    LL+ LA  G+ AA  L++  A+ R+   +  G +  + AA    RTNEGR+ +QT+L AAA DGD    PSR+T++ KAELLGV P     A +R   L +D+ P  A+GE  YWF PR KR+
Sbjct:    5 QGPAVTAAGECTRIMYAGQTRYEVIHKWSPH-ERGIKLRTTLLDSKRKGRKAAENTGYCEASEVVLSNLAREKADAIMAGKRNAARKNGIPQGGGSGGCGADRVMSCPVIAAIQGSHEGLRTRSSATTNPA-----ANNPEPQPDWRDSSESFLAAMRSMAEGELLDFLAGQGVAAADLLRKEQADARDARKMVAGTKKALAAASTQGRTNEGRRTFQTILTAAAFDGDDGDEPSRVTSKRKAELLGVHPEHFVSANKRVARLRSDLAPEEALGEGAYWFQPRGKRS 285
[Close]
BLAST of mRNA_P-littoralis_Contig1254.9.2 vs. uniprot
Match: A0A6H5J8X6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8X6_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 2.820e-22
Identity = 57/131 (43.51%), Postives = 79/131 (60.31%), Query Frame = 2 
Query:  545 MKAMTTDGLLEHLASLGIPAASQLQEVCAEQRE---LTGGLRNGIRAARVHARTNEGRQVYQTVLAAAARDGDG---PSRLTARHKAELLGVDPNLMEDAKQRAESLWTDVRPAAAMGEDKYWFHPRSKRT 919
            M++M    LL+ LA  G+ AA  L++  A+ R+   +  G +  + AA    RTNEGR+ +QT+L AAA DGD    PSR+T++ KAELLGV P     A +R   L +D+ P  A+GE  YWF PR KR+
Sbjct:    1 MRSMAEGELLDFLAGQGVAAADLLRKEQADARDARKMVAGTKKALAAASTQGRTNEGRRTFQTILTAAAFDGDDGDEPSRVTSKRKAELLGVHPEHFVSANKRVARLRSDLAPEEALGEGAYWFQPRGKRS 131
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1254.9.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KDQ3_9PHAE3.900e-3335.19Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5J8X6_9PHAE2.820e-2243.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1254contigP-littoralis_Contig1254:35603..37458 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1410
Hectar predicted targeting categoryother localisation
Exons2
Cds size606
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789552.4472907-UTR-P-littoralis_Contig1254:35602..359841680789552.4472907-UTR-P-littoralis_Contig1254:35602..35984Pylaiella littoralis U1_48UTRP-littoralis_Contig1254 35603..35984 +
1680789552.4826398-UTR-P-littoralis_Contig1254:37036..374581680789552.4826398-UTR-P-littoralis_Contig1254:37036..37458Pylaiella littoralis U1_48UTRP-littoralis_Contig1254 37037..37458 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789552.458423-CDS-P-littoralis_Contig1254:35984..360951680789552.458423-CDS-P-littoralis_Contig1254:35984..36095Pylaiella littoralis U1_48CDSP-littoralis_Contig1254 35985..36095 +
1680789552.4697144-CDS-P-littoralis_Contig1254:36541..370361680789552.4697144-CDS-P-littoralis_Contig1254:36541..37036Pylaiella littoralis U1_48CDSP-littoralis_Contig1254 36542..37036 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1254.9.2prot_P-littoralis_Contig1254.9.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1254 35985..37036 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1254.9.2

>prot_P-littoralis_Contig1254.9.2 ID=prot_P-littoralis_Contig1254.9.2|Name=mRNA_P-littoralis_Contig1254.9.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=202bp
MRVICPVIAQLHPGSVRNRTRAGESKLPADPEVTEQHPSGEDDDLDVSPA
SLPGMKAMTTDGLLEHLASLGIPAASQLQEVCAEQRELTGGLRNGIRAAR
VHARTNEGRQVYQTVLAAAARDGDGPSRLTARHKAELLGVDPNLMEDAKQ
RAESLWTDVRPAAAMGEDKYWFHPRSKRTSLKRKRRGASLIRRAGPTEWL
V*
back to top

mRNA from alignment at P-littoralis_Contig1254:35603..37458+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1254.9.2 ID=mRNA_P-littoralis_Contig1254.9.2|Name=mRNA_P-littoralis_Contig1254.9.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=1856bp|location=Sequence derived from alignment at P-littoralis_Contig1254:35603..37458+ (Pylaiella littoralis U1_48)
GGGGTAGCTCATAACGGCGATCAGAGAGAAAAACTCGCACCCCTACAAGC
GTTTCATGAGTGGTACTGGCGGTGGCCCGCAGGGCCCGGCGGTAACGACC
CGAGGGACGTGCGAGCGCACCATGATGGTTGGAGCAAAGTAACACGTGTT
GGAGCAAACGTGGAGACGGCGCAGAGAACAAGGACTGCAGCTCAGGACCG
CGGTCTTTGATGCGCAGAGCCCAACCAGAGAAGTCGGACGAACGTACGCC
TTCTCCGACGCGAACGAGCAGACCTTGAGCACGTTGACCCTCGCAAAGGC
TAACGTCACCCTCCAGAACAGGCGAGACAAGTACAACCGGGCCGTGGTGA
AGAATGACGACCCTTTGACCAGGCGCGAAAAGATGCGTGTGATCTGCCCC
GTAATCGCGCAGTTGCACCCTGGCTCAGTCAGGAATAGGACTCGTGCAGG
CGAATCCAAGCTGCCTGCTGATCCAGAGGTAACAGAGCAGCATGTAAGAC
TTCTTGTGTAATCTACGTACTACTGTTGTACTAGACTTGTGTTGTGCCGT
TACTGCTGTACTGCTGGTGACGGCTTTTGTATAAACCCGTAGTGAGTACC
AGGTACGACGTATACCGCTGTATTGTACGTAGACTAGATGTATAACCTCC
CCTGTTATTGAGTACAACGCCACCTTGCTTTCTCTCGGCCAACGAACGGT
GCATTTCAGTCAACTCTGCCTGCTGCTCGTGTCCTTGCTTAACCCTACCC
CACCGCTGCTATTGTTGACTGTCCACGGAGTGCTGCTTCTGCTGCTGCAT
GCAGTACTCCATACAACACACATACTTTTTTGTGTTCATGTTTCGAACCC
TGTGCTGTGTACACCTCGGCTGCCGCTGACTGCATCATTGCCTACGCCGC
ACGCTGCTTTGTACTCTATTGTTCTGTGTGACTGCACAGCCATCGGGGGA
GGACGATGACTTAGACGTTTCGCCAGCATCGTTGCCTGGAATGAAGGCCA
TGACGACGGATGGGTTGTTGGAGCACCTTGCTTCTCTGGGTATTCCGGCC
GCCAGTCAACTTCAAGAGGTGTGTGCAGAGCAGCGGGAGCTGACTGGCGG
CTTGCGGAATGGGATCAGGGCCGCTCGTGTACATGCACGAACCAACGAGG
GCAGGCAAGTGTACCAGACGGTCCTTGCTGCTGCTGCACGTGACGGTGAT
GGGCCGTCAAGGCTCACGGCCAGGCACAAGGCCGAGCTTCTCGGCGTTGA
TCCCAACCTCATGGAGGACGCAAAACAACGAGCGGAATCACTGTGGACGG
ACGTCCGTCCAGCAGCAGCTATGGGCGAGGACAAGTACTGGTTTCATCCA
CGGTCGAAGAGAACGAGTCTCAAGAGGAAGAGGAGGGGCGCGAGTCTGAT
TCGGAGGGCGGGTCCAACGGAATGGTTGGTGTGAGGAATGCTGTTCTCCC
AGCACAAACTTTTTTACCCGTTCAGCATCATCGTGTTTTTGCTCAGCCCA
CCGTCTTCGTCACTACGATGCGTGCTACATCAACGCGACGTACCCGCGCC
TTGTTCCAACGTTGAAAGAAGGAACAGTGGAGGAAAGTGTTGTCATGGAT
ACTGGGGTGGGTCAGAAGACTGTTGAGCCCGATACCGGGTTGTACAAAGG
CAAAAAAACGCCAAAATCAAGTTCGATGGTGGACAAAGGTCTCGGTCATG
ACAAGAGTTGCTGGTACGCAGTTCGGGGAGTGCCACTGTAGTATTTATAG
GGAGGCAGGGAGGGGCGAACGATCTTATCTGGCCAGACTGTGCGTTTTTT
GTGTGTGGTCGTCACGTTCGTACGTACAGGCTTGTAATATTAAAAATGAT
AATTTT
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1254:35603..37458+

>mRNA_P-littoralis_Contig1254.9.2 ID=mRNA_P-littoralis_Contig1254.9.2|Name=mRNA_P-littoralis_Contig1254.9.2|organism=Pylaiella littoralis U1_48|type=CDS|length=606bp|location=Sequence derived from alignment at P-littoralis_Contig1254:35603..37458+ (Pylaiella littoralis U1_48)
ATGCGTGTGATCTGCCCCGTAATCGCGCAGTTGCACCCTGGCTCAGTCAG
GAATAGGACTCGTGCAGGCGAATCCAAGCTGCCTGCTGATCCAGAGGTAA
CAGAGCAGCATCCATCGGGGGAGGACGATGACTTAGACGTTTCGCCAGCA
TCGTTGCCTGGAATGAAGGCCATGACGACGGATGGGTTGTTGGAGCACCT
TGCTTCTCTGGGTATTCCGGCCGCCAGTCAACTTCAAGAGGTGTGTGCAG
AGCAGCGGGAGCTGACTGGCGGCTTGCGGAATGGGATCAGGGCCGCTCGT
GTACATGCACGAACCAACGAGGGCAGGCAAGTGTACCAGACGGTCCTTGC
TGCTGCTGCACGTGACGGTGATGGGCCGTCAAGGCTCACGGCCAGGCACA
AGGCCGAGCTTCTCGGCGTTGATCCCAACCTCATGGAGGACGCAAAACAA
CGAGCGGAATCACTGTGGACGGACGTCCGTCCAGCAGCAGCTATGGGCGA
GGACAAGTACTGGTTTCATCCACGGTCGAAGAGAACGAGTCTCAAGAGGA
AGAGGAGGGGCGCGAGTCTGATTCGGAGGGCGGGTCCAACGGAATGGTTG
GTGTGA
back to top