mRNA_P-littoralis_Contig1254.7.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1254.7.1
Unique NamemRNA_P-littoralis_Contig1254.7.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1254.7.1 vs. uniprot
Match: A0A6H5JPK1_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPK1_9PHAE)

HSP 1 Score: 189 bits (480), Expect = 7.670e-48
Identity = 96/166 (57.83%), Postives = 122/166 (73.49%), Query Frame = 2 
Query:  956 TRTSLVEHMETLFDATMTFLRIGIESEDGLTRLGFVQQRLQRGTDSVRDHCQQHRSKMEDPSTFKMMAEMVNEGIGQWTSVGFTRAVSFQKQHPTPPEIKHMPLVIGPQWAVIGDYIV-----NVVLPSTHSLMSPTKRPGLRKSPATGDNRCFVE*RTGSCYRRN 1438
            T T+LVEHMETL  A M  L++GI SEDG TRL  ++Q+LQ G + VR HC+QHRSKM D +TFK+MA+MV+E +G WTS  FTRA++F+KQ+PTPP I+ MP V+GPQW V G++I      N+V+ S HSLMSPTKRP   +   +GD RCF+E R G C RRN
Sbjct:  161 TSTNLVEHMETLVYAIMKVLKVGIGSEDGQTRLELLRQQLQEGVEMVRAHCRQHRSKMHDAATFKVMADMVDEDLGNWTSTWFTRALAFRKQYPTPPHIESMPPVVGPQWNVTGNFIASGGLRNIVIRSHHSLMSPTKRP---RPGNSGDRRCFMEDRPGGCTRRN 323
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1254.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JPK1_9PHAE7.670e-4857.83Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1254contigP-littoralis_Contig1254:29127..35411 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1628
Hectar predicted targeting categoryother localisation
Exons4
Cds size432
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1254.7.1prot_P-littoralis_Contig1254.7.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1254 29344..30031 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789552.3500636-UTR-P-littoralis_Contig1254:29126..293431680789552.3500636-UTR-P-littoralis_Contig1254:29126..29343Pylaiella littoralis U1_48UTRP-littoralis_Contig1254 29127..29343 -
1680789552.3816876-UTR-P-littoralis_Contig1254:30031..304991680789552.3816876-UTR-P-littoralis_Contig1254:30031..30499Pylaiella littoralis U1_48UTRP-littoralis_Contig1254 30032..30499 -
1680789552.392103-UTR-P-littoralis_Contig1254:30525..307331680789552.392103-UTR-P-littoralis_Contig1254:30525..30733Pylaiella littoralis U1_48UTRP-littoralis_Contig1254 30526..30733 -
1680789552.4042618-UTR-P-littoralis_Contig1254:35108..354111680789552.4042618-UTR-P-littoralis_Contig1254:35108..35411Pylaiella littoralis U1_48UTRP-littoralis_Contig1254 35109..35411 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789552.359612-CDS-P-littoralis_Contig1254:29343..294441680789552.359612-CDS-P-littoralis_Contig1254:29343..29444Pylaiella littoralis U1_48CDSP-littoralis_Contig1254 29344..29444 -
1680789552.371148-CDS-P-littoralis_Contig1254:29700..300311680789552.371148-CDS-P-littoralis_Contig1254:29700..30031Pylaiella littoralis U1_48CDSP-littoralis_Contig1254 29701..30031 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1254.7.1

>prot_P-littoralis_Contig1254.7.1 ID=prot_P-littoralis_Contig1254.7.1|Name=mRNA_P-littoralis_Contig1254.7.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=144bp
METLFDATMTFLRIGIESEDGLTRLGFVQQRLQRGTDSVRDHCQQHRSKM
EDPSTFKMMAEMVNEGIGQWTSVGFTRAVSFQKQHPTPPEIKHMPLVIGP
QWAVIGDYIVNVVLPSTHSLMSPTKRPGLRKSPATGDNRCFVE*
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mRNA from alignment at P-littoralis_Contig1254:29127..35411-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1254.7.1 ID=mRNA_P-littoralis_Contig1254.7.1|Name=mRNA_P-littoralis_Contig1254.7.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=6285bp|location=Sequence derived from alignment at P-littoralis_Contig1254:29127..35411- (Pylaiella littoralis U1_48)
CGAGAGCAAATATATACCAGGTATGTCTTCAGAGCGGAACCCGCCCACAA
CAGTTTACCATCACCACAAGCAAGCCTTGAACCTCTTTTGTTCTCTGGCT
AATTTAATTCGAGACACACGTGTTGCAAGTTCCACGACCCTCCGGCACAT
CAACAAATCATCACATCTGTCTGTGAGGCATCGAGCGCCCTTGTGCACGT
CGTCATCTTCTACTGGCACCGTGTACAAACTGGGGTCGTGGGCTTCGCCT
TTCCGTTGGCGTGTCGTTCGCGTCATGCCTGACTCGCACAGGTCAATGTC
AAGGTAAGAGGGGGTGGAAGAGCTTGTTGTGGTGGGCTCTCCCCGGGGAG
ACAGGAGGGAGATCGGACGGATTAAAAAGTGTTGAGAGACACGGTAGAAG
GTGTCCTGGGACGATATGTTGTGGTGAGGCACAGATTTTGAGAAACAGCG
AAGGATCCCTGACAATCACACATTGAGTACCTCACACCAGTAGAAAGGCG
TCAGGAAAGATAACAAGTGTTAGTCATCGCACACAGCAGAGGCAGGGGCT
TCTCTTTACATGTTTATCACATGTCTACCTCCAATCTCTCTCATAAATAT
GAAGATAAAATTTCAACGAGACTAAAATCAAGTTAAAATAGCTTGTCTTG
ACCAGGTTCTAACAAGCTCAGTTTTGCTACTTGTACGAGTATCCCCTGAA
GTTTTTCAATGAGTAGAGGATACCATGGAGCAGCTACGTGCGTGTCGGCA
CGTCCAGACATGCTGCTGGGGTCGAGATATCGAAGGCTGCAGCAGTGGCT
CAAAAAGTCCGCAAACTGCGGCCTAACTGGACCGACACCAAAAGCTTGCC
ACTGCTGTACTCGCCGCCACAGACCCCAACCACCTGCACTGCGGGTCTAC
AGCAGTAGCTGGCGTGCCTCTAGCTGTCTCGGATGACCTGCAGTTCAGAT
GGCTGGGGTCCATGGAGGCGAGCACAGCAGTGAGTTAAGGTCCAGTTTGC
AGACTTTTTGAGTGTTTGCTGCAGCCACTTTTTGAGTGTTTGCTGCAGCC
TTCGATATCTCAGCCCCAGCAGTATGGCTGCTGACACACACATAGCTGCT
CCATGGTGTCCTCTACTGATATAAGTATTTGAGGGAGTACTCCTTGCACA
GCTGACAGAATGAGAGGTTAAGCCGATCAAGCTCTTTCGACTTCATAAAA
GATTGAAATACATCCTCTGGATCCAACATAAGATTTTTCGGTGAGGAATT
TTTAACGCCCTTGTCTGTGGTTCCTTAACAGGAAAGAAAGTCAGGGGGAT
CAGAGAGAGAGAGCACAGCAGAGAGAAAGGCACTGGAAGGTGGTGTTGCC
TCACATACGTGCATGACCATGGAGGACGTATCATCATATTGATAGGAAAT
GTGACCGGAAATATATTCGACCATGCATGCCAGCGGTGAAAGCCGCAACC
GCTCTGGCAGAAGAGCTCAGGCGGGTAGTAAGGAAATACGCCTCGTTGCG
GACAGCCAATCGGCTTGTGCGTGACGCCCGAGTAGTGCACGGCGGTAGTG
GCGAGGTGGTGTTGTCTTGCGTGTTAAGCGATCAAAGGGTATAGTAGATG
GCGGTGGGACAAAACCTTACAACAGGCCGATCGGGGCCGATCGTATCGCT
GAATTGATGGCAGGTAGGTGCGGTGAGTCTTAGGCAGCAGATGCAAGCCC
TGGCACGAGGAGGTTGTAAACATCTGTACTTGTATGTACTCGAGCCAAGA
AAGGGACCGGAGTGATGCACGAATGCAACCTACGCAAACGATCACAGCAG
TGGTCAGGATTCGATCAGAAATAGCGGATGATGACGAGATGGAGGCATCA
CTTACTATTTTGAGGAAGGGTCCAGTCCAGACGATTCCTTGAATTGTACA
CATGTGCGCGCTAAATTTTTTTTTCCCAAGTTGGCACCTCGAACCGGGAA
CACACTCAAAAACATCCCAATAGAGTAATCAGACCATTACAAGAGGGTGC
GAGCCGGAATCCATGCGTGAGAGGCGGCGCTTGAGGTGTTCTCGTGACAC
GCATGTTTTAGTTTCGAACTCCGCCATACTTTCTCAAACCCTAAATCCAA
GATGTTAAGCCCACTCCTCGCCGAATCCAAAACGAAACGGCGAGCACGAG
AGGGTGCTCAAATAAAAAGTGTGGTAGAGTGGTGCCTGATCAAACGCATG
AAATACGGGGACATCTTTTGGCAGTGACTTACTGTAGTCTCTGAGCGCAC
GTATGTATCTACCAGGTACACGAATAATTGCTGCTGTACCATGATTCTTC
CTTCTTCTAGAACTGTTCCAGGAGAGTGTGAGCCGTTCTTCGGAATATTC
CAAACACTTCCTGTACATACAGCACGTTATTTGCTGTTCTAGGAGAGTGA
GACCCGTTATTCAGACCATTCCGGACACACTACGCTACACGAGCTTCGTT
TTGAGTGAAGTGCAGCACAACTTGTCCGGGCAGAGTTGCAGTCGGTATCT
GGTCACGCGGTGCACTACCATGATACAGCATGTGACTGTTGTCATTCTTT
TGCATCACCCACTTCTTTTTCGGTCCTGTCTGCGGATCCGATCTCTCGCA
AGCCCGGCCGCACCCACGCCGTAGTTGGAATTGCTCACACTCGTATACGT
GAGAACAAATAAAATGAAAAGGGGCGGCTCGAAACGTGATGCAACGCCCC
GAGAGATTTCACAAAATGTGTCAGTAATGCTGTGCACATTGTCAAGCATT
GCATCGTACTTCGAAGTTATTGACACGAAGAACGAAGTACTGTACTCTGT
GCAGCAGCGACGGGGCGGTGCAGGCAGCAAGCAGCACATACTTGGAGTAT
TATATTCACGACGATACAGACAGGTGGATTGTATGTATGATACTTCGTGC
ACAGCAGGGGTGGATCGGTTTCGGGCAATACTCCTGCTGTCCGGGCACGG
AATGAAAAGGTCAAAATGTGTACTGCTACAGCATGATACATGCGAACTAC
CTACTTCGTTTTATTCCATACGAAGTATCAATTGTTCATGTGTGTATACC
TATGATCGCTTCGTGCTGCTGTCAGATGATTTGACGCGCGAACCTTTGGT
ACAATCTCGAAATCGCATGATCCGTTCCGGGTTGTTGACGCGGAGATAGT
ACAGCAGCATTACAGGTCGTTCGTATCACATCATATGATATACTTCGAAG
AATGTACGAAGCAGTACCATACACGCATGTATTGATGGTGAGGATATACT
ATATACTACGAGTAGTGGGGAGGGGAATTCATAGTTTTTGGTGTGAGGGA
CGCGATATGGAGACGTTTTCAGGTTTCGCCCGTCGGGTCGCATACCAGGC
GCTCGATCTCACGTCATTCACTACATTCCACAAAAATACTGGCGTCCAGA
ATAGATGGGACGAAAACAAGCACATTTGTAGACTAACGGGTGATCTTTAC
GCATGCAGCACACTAGACTAACGGGTGATCGTTACGTTCAATGGAGACCG
GGGTGTATATAAATGTTGAAAATATTGTCTCGTTACTTTATTGTTAGTGA
CATCTCCCACAGGGCTGTGACAAGTCGCAAACGTAATGTCATATCGTGTC
ATCTCACACGACGCTGACAGCCGGGAGGGAAGTACGGGATACAGTGTATC
ACATCACTGCTGTTTGTCGGTGCAAGTAACACCTTCATAAATAAATTTAT
AGAATTCTGATTCAAACTACACCGTCGTGTCATCGACCTCGGTCGAACAG
CAGTAGAGTCGGTGGAGGTGATGGCTTAATGTGCGCTGCGTGTGGACGGT
TGCACGCAGTGTTGTTTTGCCGCTACGGTTTTTCACAAGTACGTGACAAT
CGCAGATGCCGAAAGTTGACCGAGGGGCGGCAACTCCTCCTAAATCAATT
CATAAAAATGCAGATCTCCTCAATCAAGCTACAAGGCCGTCGTCGGTATA
TACATATATACAAAAAACGGAACTGATTATTCAAGCTACCGTGTTGTCGG
TTATCGGCCTTGGCGGTACTCCAACGTAGCTGTCGAATCTGTCGGGCAGC
AGTAGCAGCTAGCGCTTACCGTCGATATGCACGCTGTCGAAGTAATTCCA
AGAGGTAGCTAGATAGCGGCTACTGTACCTATGTTTTTTCATAACTCTTT
TAATTTTGGTCCACTCAACTTTTGTGTTCAGCACTGTGCCAGACACACGT
GCAGCGCGCTGCCTGTCAGAAACCATTTTTTCTTCAAATTTGTAGAACAT
GAACCGCACACACTGATTCAGTTCACCGTCGTGCAGGTGGCCGGGGCAGT
ATTCTACCGTCGCTGTCGATTTGCGCAAAGATCTCGCCATCGAAGCGCCG
CAGAGCAGATGCAACAAACTATAGAGAGCTACTGAATCATCTTCCGCATC
CGTACGACTACAGTTGCTGCTGCGGTATCAGTAACCGCCGTCAATGTCAA
TTCTCCCTTGCTCGGGTGATTGAAGATAGTTGCCGAAACCGGGTGCACAC
ACAGTCTCTCGAAATCACAAGGAGTTACTGGACCAAACCACGAAGTTTGC
CGCTGCGATGCCCACATCGACGTGATTCCGTAGCTTTCGGCGCTCGCCGG
GAGCAGTAGCTACCGCTTGAGACATTTTCCTGAAAAACGCGGCCCTTGTC
GTATGGACGCCCACCACACATCGAACAGATGTCTACATGACGACCAGATC
TAGGGCCGGTGGGACGCGGGTGGGACGGAGTTGAGGGAGCACTCGTGCCG
CCCGACGATCCACCAACCGATCTGGGGCACGATCCACTAACCGATCTGGG
GCGCGACGTACACCGACTACGGGTCGGGCACGGTCGGCGGCGCCGTTGCG
CGGCGGCGACGCGGGCGCTGCCGAGATGGTCGAATTGCGCGAGGCGATGG
CATCGATGCAAGCGAACCTGGATGCAGCTAACGGCAAGATTCGCCAGCTG
GAGGCCGAACGGGACGACCGTGCGGCGGCGACGGCGGGGGAAGCACCCGC
GGGATCGTCGACGATTGGGTAAGGGCGAGCACCGGGGGGAGACCCACTGC
CAGCCGAAGACGCGACACCGGGGAAATTCCTTAATTTGACACGCGCTCCA
CCGTCCCCATCCATGGCTCACGTGACCAACGCCAGTGCGTTGGAGTCCGT
TGCAGCTTGGCGCAACGTCTCCATCCTAAAATGCTGGATCATGATCGGGG
AGCGGCCCACCGTCGCCAACCTCAAAAACTGGTAGAGATGCGGTCGTTAT
TTCGGGGGAAGGTGCGGGTGACTGCCGCGGTCCAAGAGCAGCTGAATTCT
ATGAGTAACTTCCATGTGCGGATGTACACCGCGGAGGGCGACGACACAAA
CCAAGCACCCGCACTAGCCTCGTCGAGCACATGGAGACCCTCTTCGATGC
CACCATGACATTCCTGCGCATTGGGATCGAATCTGAGGACGGCCTCACGC
GCCTGGGATTCGTCCAGCAACGGCTCCAGCGCGGCACCGACTCAGTCCGA
GACCACTGCCAGCAACACCGGAGCAAAATGGAGGACCCCAGCACCTTTAA
GATGATGGCGGAGATGGTCAACGAGGGCATCGGGCAGTGGACGTCGGTGG
GGTTCACCAGGGCTGTATCGTTCCAGAAGCAGCACCCGACGCCGCCAGAG
ATCAAGCATATGCCCCTGGTGATCGGACCCCAGTGGGCCGTCATCGGGGA
TTACATCGTTAGTGGCGCACTGCGCAACGTCGTCCTTCCCAGCACTCACT
CTCTGATGTCTCCAACCAAGCGTCCTGGTTTGAGAAAATCCGCGGCGACC
GGTGACAACCGGTGTTTTGTGGAATAACGGACGGGGAGCTGTTACCGCCA
GGGCTGTATCGTTCCAGAAGCAGCACCCGACGCCGCCAGAGATCGAGCAT
ATGCCCCTGGTGATCGGACCCCAGTGGGCCGTCATCGGGGATTACATCGT
TAGTGGCGCACTGCGTAACGTCGTCCTTCCCAGCACTCACTCTCTGATGT
CTCCAACCAAGCGTCCTGGTTTGAGAAAATCCCCGGCGACCGGTGACAAC
CGGTGTTTTGTGGAATAACGGACGGGGAGCTGTTACCGCCGGAATTGCCA
GTGGGACCACTTTCAGAAGCCCAACCGCCGCGCCGGCAATGGGGGCGGCG
GCACGGGCGGGGGTCGCCCTCGGAACAGCGGCGCAGGAGGCGGAGACAGG
AGAGTTGCTCCCGGGTGTGATTCCGGCCGCGGCGGTCGCGGTGAGGGAGA
TCGCGGAAGAGGGGGACAACGGCCGCTTAGATGGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1254:29127..35411-

>mRNA_P-littoralis_Contig1254.7.1 ID=mRNA_P-littoralis_Contig1254.7.1|Name=mRNA_P-littoralis_Contig1254.7.1|organism=Pylaiella littoralis U1_48|type=CDS|length=432bp|location=Sequence derived from alignment at P-littoralis_Contig1254:29127..35411- (Pylaiella littoralis U1_48)
ATGGAGACCCTCTTCGATGCCACCATGACATTCCTGCGCATTGGGATCGA
ATCTGAGGACGGCCTCACGCGCCTGGGATTCGTCCAGCAACGGCTCCAGC
GCGGCACCGACTCAGTCCGAGACCACTGCCAGCAACACCGGAGCAAAATG
GAGGACCCCAGCACCTTTAAGATGATGGCGGAGATGGTCAACGAGGGCAT
CGGGCAGTGGACGTCGGTGGGGTTCACCAGGGCTGTATCGTTCCAGAAGC
AGCACCCGACGCCGCCAGAGATCAAGCATATGCCCCTGGTGATCGGACCC
CAGTGGGCCGTCATCGGGGATTACATCGTTAACGTCGTCCTTCCCAGCAC
TCACTCTCTGATGTCTCCAACCAAGCGTCCTGGTTTGAGAAAATCCCCGG
CGACCGGTGACAACCGGTGTTTTGTGGAATAA
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