mRNA_P-littoralis_Contig1253.3.4 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1253.3.4
Unique NamemRNA_P-littoralis_Contig1253.3.4
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1253.3.4 vs. uniprot
Match: D7FMM9_ECTSI (Similar to ATP synthase mitochondrial F1 complex assembly factor 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMM9_ECTSI)

HSP 1 Score: 466 bits (1200), Expect = 9.670e-158
Identity = 257/369 (69.65%), Postives = 285/369 (77.24%), Query Frame = 2 
Query:  542 MNTSAIHPACLVLSSGLKRRSYQLCSRSLAGREPRHGLQQHHHLCTSPSVLLLHHGVSASSTSSPVAVLVRSVQGYRSCRNMTIPQR-----RQISSTPELTHQRIKGRRRFYKHVTIRE----KVRDNSNSNNEEGKHDRRWEVLLDSRVLKTPGRRSLEFDSSELAMAVAGEWDTQVTSKGIEPAVMPLMALASTAIDQVASDREKTISTCLKYLPTDTVCFLSPDPDPVVARRQRQLWAPLRDWAGEALGIPVATTTEIHRKPEHPPESLAQARNLLESLDEWGLAAVQSVTMECKSLVIALALLFRKTTVEKAFDAARLEEEYNVERWGMIEGGHDMDRGNTSLALTAASTLIWLRSTPLPKPSP 1621
            MN SA+ P CL +SSGL+RRS +      + R    G +Q  H  T+P     HH     ST++P       + G     N T+P R     R++SS PELTHQRIKGR RFYK VTIRE    K  D +++    G    RWE+LLDSRVLKTPGRR L+FDS ELAMAVA EWD Q TSKGIEPAVMPLMALASTA+DQVASDREKT++TCLKYLPTDTVCFLSPDPDPV+ARRQRQLW+PLRDW  EALGIPVATTTEIHR P+HPPE+LA+AR+LLESLDEWGLAAVQS TMECKSLVIALALLFRKTTVEKAFDAARLEEEYNVERWGMIEGGHDMDR NT+L LTAASTLIWLRS  L  PSP
Sbjct:    1 MNPSAVTPVCLTVSSGLRRRSQRFL---YSIRPAAAGQRQQRHDRTTPQ----HH--QRPSTAAP------HLNGV----NSTVPSRVGGPQREMSSAPELTHQRIKGRSRFYKTVTIREIVADKAGDEASAAAAVGDKSPRWEILLDSRVLKTPGRRPLQFDSPELAMAVAAEWDAQDTSKGIEPAVMPLMALASTALDQVASDREKTVATCLKYLPTDTVCFLSPDPDPVIARRQRQLWSPLRDWTEEALGIPVATTTEIHRTPQHPPEALARARDLLESLDEWGLAAVQSATMECKSLVIALALLFRKTTVEKAFDAARLEEEYNVERWGMIEGGHDMDRANTTLTLTAASTLIWLRSASLRPPSP 350
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BLAST of mRNA_P-littoralis_Contig1253.3.4 vs. uniprot
Match: A0A835YM22_9STRA (ATP synthase-like protein mitochondrial F1 complex assembly factor 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM22_9STRA)

HSP 1 Score: 273 bits (699), Expect = 2.910e-83
Identity = 140/266 (52.63%), Postives = 186/266 (69.92%), Query Frame = 2 
Query:  797 QRRQISSTPELTHQRIKGRRRFYKHVTIRE-KVRDNSNSNNEEGKHDRRWEVLLDSRVLKTPGRRSLEFDSSELAMAVAGEWDTQVTSKGIEPAVMPLMALASTAIDQVASDREKTISTCLKYLPTDTVCFLSPDPDPVVARRQRQLWAPLRDWAGEALGIPVATTTEIHRKPEHPPESLAQARNLLESLDEWGLAAVQSVTMECKSLVIALALLFRKTTVEKAFDAARLEEEYNVERWGMIEGGHDMDRGNTSLALTAASTLIWL 1591
            QRR +S   +  HQ+IKGRRRFYK V++ + K  D+S           +W+VLLD+R L+TP RR L F +  LA AVA EWD Q  S GIEPAVMPLM L +TA+DQVA + E TI   + YL TDTVCF +PD D ++ +RQ++ W PL  WA +ALG  +  T     +P+HPPE + QAR ++  LD + L+AVQ +TMECKSLV+ALA+ +R+ T+E+AFDAARLEE +N+E WG++EGGHD+D  +T L L+AAS L+WL
Sbjct:   42 QRRNMS-VQDTVHQKIKGRRRFYKIVSVDQVKASDSSGP---------QWQVLLDNRPLRTPARRPLHFPTEALARAVAAEWDAQTRSTGIEPAVMPLMTLCATALDQVAVNPEPTIDNVMNYLHTDTVCFFAPDDDRIILKRQKKTWGPLHTWASKALGGELVKTQHAIARPQHPPEVVDQARAIVAGLDPFALSAVQCITMECKSLVVALAVAYRQITMEQAFDAARLEEGFNIEHWGLVEGGHDLDICSTKLQLSAASMLLWL 297
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BLAST of mRNA_P-littoralis_Contig1253.3.4 vs. uniprot
Match: A0A6V1NN32_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NN32_HETAK)

HSP 1 Score: 221 bits (562), Expect = 2.190e-63
Identity = 117/275 (42.55%), Postives = 170/275 (61.82%), Query Frame = 2 
Query:  770 RSCRNMTIPQRRQISSTPELTHQRIKGRRRFYKHVTIREKVRDNSNSNNEEGKHDRRWEVLLDSRVLKTPGRRSLEFDSSELAMAVAGEWDTQVTSKGIEPAVMPLMALASTAIDQVASDREKTISTCLKYLPTDTVCFLSPDPDPVVARRQRQLWAPLRDWAGEALGIPVATTTEIHRKPEHPPESLAQARNLLESLDEWGLAAVQSVTMECKSLVIALALLFRKTTVEKAFDAARLEEEYNVERWGMIEGGHDMDRGNTSLALTAASTLIWLR 1594
            RSCR+                HQ IKGR+RFY +V+++           E GK    +E+ LD R LKTPGR S+ F + + A+AVA EWD+Q   KGIEP  MPLM L +TAID ++ D   T+   LKY PTDT C+ + + + ++ +RQ +L  P+ +   +  G+ +ATT  +  K  HPPES+++ ++++ESLD + L+A+Q  TMECKSLV+ L+L     TVE+A    R+EEE+ +E WG IE GHD+DR  T++ L+AAS L+ L+
Sbjct:   24 RSCRSFRASGFHPEKQVLNKVHQTIKGRKRFYNNVSVKRV---------ESGK----FEIQLDGRSLKTPGRNSMHFPNEQYALAVAAEWDSQTEKKGIEPGTMPLMTLTATAIDHISVDPSPTLDNILKYFPTDTACYFANEEERILRKRQIKLLDPVIEKLSKTFGVDIATTDAMITKVPHPPESISKMKDIVESLDPFALSALQCATMECKSLVLGLSLTSGLITVEEAQACCRIEEEFQIEVWGEIENGHDLDRVGTAVQLSAASVLMQLK 285
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BLAST of mRNA_P-littoralis_Contig1253.3.4 vs. uniprot
Match: A0A7S1XL47_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XL47_9STRA)

HSP 1 Score: 210 bits (534), Expect = 2.650e-59
Identity = 112/260 (43.08%), Postives = 161/260 (61.92%), Query Frame = 2 
Query:  815 STPELTHQRIKGRRRFYKHVTIREKVRDNSNSNNEEGKHDRRWEVLLDSRVLKTPGRRSLEFDSSELAMAVAGEWDTQVTSKGIEPAVMPLMALASTAIDQVASDREKTISTCLKYLPTDTVCFLSPDPDPVVARRQRQLWAPLRDWAGEALGIPVATTTEIHRKPEHPPESLAQARNLLESLDEWGLAAVQSVTMECKSLVIALALLFRKTTVEKAFDAARLEEEYNVERWGMIEGGHDMDRGNTSLALTAASTLIWLR 1594
            S P+ THQ IKGR RFY    +     + + +          W+V LD R L TP R  L   S  LA A+A EWD Q T  GIEP+ MPLM+LASTA+DQ+A D E TI+  L +L TDT CFL+P  + ++  RQ +++APL  W  E  G  +A + +I  KP+HP +++A     +  +D + LAA+Q  T  CKS+V+ LA++  + T E+A  A RLEE++NVE+WG++EGGHD+D   +  +L++A+T + LR
Sbjct:   24 SAPQ-THQTIKGRTRFYVRTGVMPAKDEAAAAVXXXXXXXGGWQVTLDGRPLPTPARAPLVLPSEPLAWAIAAEWDNQSTPVGIEPSFMPLMSLASTALDQIAVDAEPTINALLPFLKTDTACFLAPPEERILRARQEEVFAPLLAWVRERYGADLAVSEDIIAKPDHPADAVAALEAAMRGMDCFELAALQCATFNCKSMVMGLAVVEHELTPEEAQRACRLEEDFNVEQWGLVEGGHDVDMAASLASLSSATTFLRLR 282
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BLAST of mRNA_P-littoralis_Contig1253.3.4 vs. uniprot
Match: A0A7S3HNX9_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HNX9_9STRA)

HSP 1 Score: 209 bits (532), Expect = 5.020e-59
Identity = 112/275 (40.73%), Postives = 171/275 (62.18%), Query Frame = 2 
Query:  764 GYRSCRNMTIPQRRQISSTPELTHQRIKGRRRFYKHVTIREKVRDNSNSNNEEGKHDRRWEVLLDSRVLKTPGRRSLEFDSSELAMAVAGEWDTQVTSK-GIEPAVMPLMALASTAIDQVASDREKTISTCLKYLPTDTVCFLSPDPDPVVARRQRQLWAPLRDWAGEALGIPVATTTEIHRKPEHPPESLAQARNLLESLDEWGLAAVQSVTMECKSLVIALALLFRKTTVEKAFDAARLEEEYNVERWGMIEGGHDMDRGNTSLALTAASTLI 1585
            G R+   +T P+    S  P + HQ I GR RFYK V +             +GK  + + + LD RVLKTPGR  L   +  LAM++A EWD Q   + GI+P  MP+M++ASTAIDQ+  DR   + TC++YLPTDT  F +PD D ++  +Q++ + P+ +WA + L + +AT+  +  + EHP  +  + R++LE +D + L  VQ  T+ECKS++++LA + R   +EKA  A+R+EEE+ VE WG++EGGHDMDR N ++ L++  T +
Sbjct:    7 GQRAALLLTRPRVAHFSQVPAV-HQSISGRTRFYKKVDV---------IPTPDGKAGQ-YSITLDGRVLKTPGRNPLILPNLNLAMSIAAEWDAQTNKRMGIQPVNMPMMSIASTAIDQIQVDRTHAVDTCMRYLPTDTALFHAPDYDRILQAQQKKHFLPVLEWAQKELDMNLATSQSMAGRIEHPEAAYNKLRSILEKMDYYTLTCVQGATLECKSILLSLAFISRFIDLEKAIAASRIEEEFQVEIWGVVEGGHDMDRLNNAVRLSSVGTFM 270
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BLAST of mRNA_P-littoralis_Contig1253.3.4 vs. uniprot
Match: A0A7S2WTT0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WTT0_9STRA)

HSP 1 Score: 206 bits (525), Expect = 7.180e-58
Identity = 116/258 (44.96%), Postives = 163/258 (63.18%), Query Frame = 2 
Query:  824 ELTHQRIKGRRRFYKHVTIREKVRDNSNSNNEEGKHDRRWEVLLDSRVLKTPGRRSLEFDSSELAMAVAGEWDTQVTSKGIEPAVMPLMALASTAIDQVASDREKTISTCLKYLPTDTVCFLSPDPDPV--VARRQRQLWAPLRDWAGEALGIPVATTTEIHRKPEHPPESLAQARNLLESLDEWGLAAVQSVTMECKSLVIALALLFRKTTVEKAFDAARLEEEYNVERWGMIEGGHDMDRGNTSLALTAASTLIWL 1591
            E  H  IKGRRRFYK V ++    D S +         ++EV LD R L+TPGRR++ FDS ELAMAVA EWD Q   +GIEPA MPLM+L ST +DQ + DR   I+  LK+LPTDT CF + +      + RRQ + +  L DW  +  G+ ++TT  I  K +H  E++ +   +L++LD+  L AVQ  TME KS+V+ALAL+ R+ T + A + ARLEEE+ +E+WG++EGGHD+DR  + +   + S  + L
Sbjct:   31 EKVHPTIKGRRRFYKQVAVQ--ALDGSGAT--------KYEVQLDGRSLRTPGRRAMHFDSQELAMAVALEWDAQAP-EGIEPATMPLMSLMSTWLDQTSQDRPTVITGALKFLPTDTCCFFNEEAPATRNLVRRQEKHFFKLLDWLADDWGVELSTTNGI-TKVKHEDEAVRRVEAMLDALDDAALTAVQCATMEGKSVVLALALVLRRVTPKAAEEIARLEEEFQMEQWGLVEGGHDLDRAASKVQFASTSAFLRL 276
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BLAST of mRNA_P-littoralis_Contig1253.3.4 vs. uniprot
Match: A0A482S1E3_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S1E3_9ARCH)

HSP 1 Score: 189 bits (479), Expect = 3.250e-51
Identity = 110/256 (42.97%), Postives = 153/256 (59.77%), Query Frame = 2 
Query:  827 LTHQRIKGRRRFYKHVTIREKVRDNSNSNNEEGKHDRRWEVLLDSRVLKTPGRRSLEFDSSELAMAVAGEWDTQVTS-KGIEPAVMPLMALASTAIDQVASDREKTISTCLKYLPTDTVCFLSPDPDPVVARRQRQLWAPLRDWAGEALGIPVATTTEIHRKPEHPPESLAQARNLLESLDEWGLAAVQSVTMECKSLVIALALLFRKTTVEKAFDAARLEEEYNVERWGMIEGGHDMDRGNTSLALTAASTLIWL 1591
            LTHQ   GR+RFYKHV ++ K+ +N            ++ + LD R L+TP R +L   +  LA+A+A EWD Q    KGIEP  MPLM LASTAIDQ+A   E TI T L Y+PTD+  + + + D  +  +Q+    P+     +AL I VATT ++ +K  HP     +    L  LD + LAAVQS   E KSLV++L+L+ +  ++++   A+RLEEE   E WG++EGGHDMDR N S+ L+AA T   L
Sbjct:   48 LTHQGFAGRKRFYKHVGVK-KIAEN------------KFGIELDGRTLRTPARNNLHLPTFSLALAIAAEWDAQTDQRKGIEPVTMPLMTLASTAIDQIAPHPEGTIETVLSYMPTDSALYFTTEQDRYLYNKQQTHLLPILSKFNDALQIRVATTQDMSQKISHPVGVQEKIAFFLSKLDCFTLAAVQSAVKESKSLVLSLSLVGKLASLQEVVLASRLEEEVQCEIWGVVEGGHDMDRLNNSVGLSAAHTFTEL 290
[Close]
BLAST of mRNA_P-littoralis_Contig1253.3.4 vs. uniprot
Match: A0A024TVQ1_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024TVQ1_9STRA)

HSP 1 Score: 169 bits (429), Expect = 2.100e-44
Identity = 102/258 (39.53%), Postives = 144/258 (55.81%), Query Frame = 2 
Query:  839 RIKGRRRFYKHVTIREKVRDNSNSNNEEGKHDRRWEVLLDSRVLKTPGRRSLEFDSSELAMAVAGEWDTQVTSKGIEPAVMPLMALASTAIDQVASDREKTISTCLKYLPTDTVCF-LSPDPDPVVARRQRQLWAPLRDWAGEALGIPVATTTEIHRKPEHPPESLAQARNLLESLDEWGLAAVQSVTMECKSLVIALALLFRKTTVEKAFDAARLEEEYNVERWGMIEGGHDMDRGNTSLALTAASTLIWLRSTPLP 1609
            +I GR RFYK V I             E + D  + + LD + ++TP R  L+  +  LA AVA EWD Q   + I+P  MP+M LASTA+D    D +  I   +KYL TDT+CF +       +A RQ + W PLR W     G  +        K EH P ++   R  + S+D++ L A + +  ECKS+V+ALALL R  T ++A +  RLEEEY +ERWG++EGGHD+DR N S+ + +AS  +WL +   P
Sbjct:   38 KIAGRSRFYKAVGI-------------EAEGDG-YCITLDGKKVRTPSRSLLQLPTKSLAAAVAKEWDAQ--HETIQPTTMPIMTLASTALDHW--DFDFIIEEIMKYLQTDTICFPVESQHQEKLAARQEKKWQPLRKWFETEFGGELDINYGTINKLEHSPVAVENVRAFVYSMDKFELMAFRLIVRECKSMVVALALLKRHITAKEAIELGRLEEEYQIERWGLVEGGHDLDRVNCSVNVHSASFFLWLLNERTP 277
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BLAST of mRNA_P-littoralis_Contig1253.3.4 vs. uniprot
Match: W7TPZ3_9STRA (Atp synthase mitochondrial f1 complex assembly factor 2 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TPZ3_9STRA)

HSP 1 Score: 173 bits (439), Expect = 2.750e-44
Identity = 96/251 (38.25%), Postives = 144/251 (57.37%), Query Frame = 2 
Query:  848 GRRRFYKHVTIREKVRDNSNSNNEEGKHDRRWEVLLDSRVLKTPG-RRSLEFDSSELAMAVAGEWDTQVTSKGIEPAVMPLMALASTAIDQVASDREKTISTCLKYLPTDTVCFLSPDP--DPVVARRQRQLWAPLRDWAGEALGIPVATTTEIHRKPEHPPESLAQARNLLESLDEWGLAAVQSVTMECKSLVIALALLFRKTTVEKAFDAARLEEEYNVERWGMIEGGHDMDRGNTSLALTAASTLIWL 1591
            GRRRFYK V +R  +       +  G+    +EV LD   LKTPG  ++    +  LA+AVA EWD QVT KG+EP  MPL  +A+ A+D++   R  TI  CL+YL TDTVC+  P+   D  + RRQ++ W PL  W  +  G+ +     +     + PE+L + R +L+ +D + LAA  S+ ++ KS++ ALAL+FR  TVE+A  A+ LEE +    WG ++  H+++         AAS+ +WL
Sbjct:  133 GRRRFYKTVGVRPSL-------DPSGRQVHHYEVTLDGYPLKTPGTEKAYRLPTEGLALAVALEWDQQVTYKGVEPTYMPLTGIATIALDEIVFSRHSTIDRCLRYLATDTVCYCFPEEEDDHKLLRRQQKTWEPLLGWLRDEFGVHITKPAHMLDVCHNSPETLQKVRIMLQEMDPFTLAAFLSLVLDLKSVITALALVFRHVTVEEACQASALEEAHQKAAWGSVDLYHELEETVLYTQTAAASSFLWL 376
[Close]
BLAST of mRNA_P-littoralis_Contig1253.3.4 vs. uniprot
Match: H3GHD5_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GHD5_PHYRM)

HSP 1 Score: 166 bits (421), Expect = 3.150e-43
Identity = 100/254 (39.37%), Postives = 152/254 (59.84%), Query Frame = 2 
Query:  839 RIKGRRRFYKHVTIREKVRDNSNSNNEEGKHDRRWEVLLDSRVLKTPGRRSLEFDSSELAMAVAGEWDTQVTSKGIEPAVMPLMALASTAID-QVASDREKTISTCLKYLPTDTVCF--LSPDPDPVVARRQRQLWAPLRDWAGEALGIPVATTTEIHRKPEHPPESLAQARNLLESLDEWGLAAVQSVTMECKSLVIALALLFRKTTVEKAFDAARLEEEYNVERWGMIEGGHDMDRGNTSLALTAASTLIWL 1591
            +I G  RFYK V +R+   D S +  E  K    + V LD + +KTP ++ +   +  LA AVA EWD Q  S  I PA MP+M LASTA+D +  S  ++ I+  L YL TDTVC+   +   D +VA +Q++ W P+R W  +A    V  +     +  H  + +   R  LE+L+++ L A++++T ECKSL+ ALA+  R  T ++A D  RLEEE+ +  WG++EGGHD+DR N ++ L++AS L++L
Sbjct:   29 KITGVLRFYKDVGVRDVEEDPSEAGAEPRKL---FAVTLDGKAVKTPRQQPVRLPTRALAYAVAHEWDAQ--SHDIRPATMPIMTLASTALDLEFTSSSQEIINEMLHYLHTDTVCYQVTADQQDKLVALQQKK-WKPIRKWFSDAFEGEVDVSHGSIDRLAHGQQLVENVREHLETLNDFELTAMRTLTKECKSLITALAVFKRHITAKEAMDICRLEEEFQINNWGLVEGGHDLDRVNCAVKLSSASFLLYL 276
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1253.3.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMM9_ECTSI9.670e-15869.65Similar to ATP synthase mitochondrial F1 complex a... [more]
A0A835YM22_9STRA2.910e-8352.63ATP synthase-like protein mitochondrial F1 complex... [more]
A0A6V1NN32_HETAK2.190e-6342.55Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S1XL47_9STRA2.650e-5943.08Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S3HNX9_9STRA5.020e-5940.73Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S2WTT0_9STRA7.180e-5844.96Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A482S1E3_9ARCH3.250e-5142.97Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A024TVQ1_9STRA2.100e-4439.53Uncharacterized protein n=3 Tax=Aphanomyces TaxID=... [more]
W7TPZ3_9STRA2.750e-4438.25Atp synthase mitochondrial f1 complex assembly fac... [more]
H3GHD5_PHYRM3.150e-4339.37Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1253contigP-littoralis_Contig1253:28389..35957 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FMM9
PFAMsATP12
Model size1954
Max annot lvl2759|Eukaryota
KEGG koko:K07556
Hectar predicted targeting categorymitochondrion
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0008150,GO:0009987,GO:0016043,GO:0016604,GO:0016607,GO:0022607,GO:0031974,GO:0031981,GO:0034622,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043461,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0065003,GO:0070013,GO:0070071,GO:0071840
Exons7
Evalue1.72e-162
EggNOG OGsCOG5387@1|root,KOG3015@2759|Eukaryota
Ec32 ortholog descriptionsimilar to ATP synthase mitochondrial F1 complex assembly factor 2
Ec32 orthologEc-23_000930.1
Descriptionproton-transporting ATP synthase complex assembly
Cds size1089
COG categoryO
BRITEko00000,ko03029
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1253.3.4prot_P-littoralis_Contig1253.3.4Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1253 28930..35633 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789552.0862284-UTR-P-littoralis_Contig1253:28388..289291680789552.0862284-UTR-P-littoralis_Contig1253:28388..28929Pylaiella littoralis U1_48UTRP-littoralis_Contig1253 28389..28929 +
1680789552.1783743-UTR-P-littoralis_Contig1253:35633..359571680789552.1783743-UTR-P-littoralis_Contig1253:35633..35957Pylaiella littoralis U1_48UTRP-littoralis_Contig1253 35634..35957 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789552.1003637-CDS-P-littoralis_Contig1253:28929..291691680789552.1003637-CDS-P-littoralis_Contig1253:28929..29169Pylaiella littoralis U1_48CDSP-littoralis_Contig1253 28930..29169 +
1680789552.113617-CDS-P-littoralis_Contig1253:30205..304211680789552.113617-CDS-P-littoralis_Contig1253:30205..30421Pylaiella littoralis U1_48CDSP-littoralis_Contig1253 30206..30421 +
1680789552.1250525-CDS-P-littoralis_Contig1253:30841..309611680789552.1250525-CDS-P-littoralis_Contig1253:30841..30961Pylaiella littoralis U1_48CDSP-littoralis_Contig1253 30842..30961 +
1680789552.1350791-CDS-P-littoralis_Contig1253:32587..326521680789552.1350791-CDS-P-littoralis_Contig1253:32587..32652Pylaiella littoralis U1_48CDSP-littoralis_Contig1253 32588..32652 +
1680789552.144524-CDS-P-littoralis_Contig1253:33024..331061680789552.144524-CDS-P-littoralis_Contig1253:33024..33106Pylaiella littoralis U1_48CDSP-littoralis_Contig1253 33025..33106 +
1680789552.153563-CDS-P-littoralis_Contig1253:34291..344891680789552.153563-CDS-P-littoralis_Contig1253:34291..34489Pylaiella littoralis U1_48CDSP-littoralis_Contig1253 34292..34489 +
1680789552.1642256-CDS-P-littoralis_Contig1253:35465..356331680789552.1642256-CDS-P-littoralis_Contig1253:35465..35633Pylaiella littoralis U1_48CDSP-littoralis_Contig1253 35466..35633 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1253.3.4

>prot_P-littoralis_Contig1253.3.4 ID=prot_P-littoralis_Contig1253.3.4|Name=mRNA_P-littoralis_Contig1253.3.4|organism=Pylaiella littoralis U1_48|type=polypeptide|length=363bp
MNTSAIHPACLVLSSGLKRRSYQLCSRSLAGREPRHGLQQHHHLCTSPSV
LLLHHGVSASSTSSPVAVLVRSVQGYRSCRNMTIPQRRQISSTPELTHQR
IKGRRRFYKHVTIREKVRDNSNSNNEEGKHDRRWEVLLDSRVLKTPGRRS
LEFDSSELAMAVAGEWDTQVTSKGIEPAVMPLMALASTAIDQVASDREKT
ISTCLKYLPTDTVCFLSPDPDPVVARRQRQLWAPLRDWAGEALGIPVATT
TEIHRKPEHPPESLAQARNLLESLDEWGLAAVQSVTMECKSLVIALALLF
RKTTVEKAFDAARLEEEYNVERWGMIEGGHDMDRGNTSLALTAASTLIWL
RSTPLPKPSPWK*
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mRNA from alignment at P-littoralis_Contig1253:28389..35957+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1253.3.4 ID=mRNA_P-littoralis_Contig1253.3.4|Name=mRNA_P-littoralis_Contig1253.3.4|organism=Pylaiella littoralis U1_48|type=mRNA|length=7569bp|location=Sequence derived from alignment at P-littoralis_Contig1253:28389..35957+ (Pylaiella littoralis U1_48)
CCAGGATGTACTGCACGATGAGGCGACACCGAGGTGCCAAACGAGCTAGT
CGATCCAGGCTCTCGAGGATGATCGATCTGCACACTCCATTGAGAGCCAG
GGGCAGCAACCTGCTGTGAGTGCTTACACAGGCAGGCAGATGATTCGGGT
GATCCACCACCCACAGAACGGCAGTCAGTACCTCGGAGGTCTGGGTTGAT
GCATCTCCACAGCAGAGTTTGTAGACACGCTCTACAGCTGTTGGTCCAGA
CCTTTGAATCGAGCTCACATCGAAGCGTGTGGCTGTGTACACCCCGGTGC
ATTGCTTCCGCGCCGGCAGTCAGAAAGGTTGTCGTTCTGGTGAGGCAGAT
ACACGATGTGAAAACGTTCAAGCAGCACGTGTTATTTTTTTTATGACAGT
CCCGCCGCAAAAAGCGCTACAACAGCGCCACCACCAACAACCTCCCTCAG
CCTAGCAGCGACTTCGTCTTAGGAGTCTACTGTGTGCAATTGGTGCTGCG
CTGCCCTGCACTTCGCGTGTGCATTGTAGAGGCACGCAGCCATGAACACA
TCCGCGATACATCCCGCATGTCTGGTGCTCTCATCTGGACTCAAAAGGCG
ATCGTATCAGCTGTGTTCCAGATCTCTCGCAGGTCGAGAACCAAGACATG
GTCTTCAGCAACACCATCATCTGTGCACTTCGCCGTCAGTACTGCTGCTG
CATCATGGTGTCAGTGCCAGCAGCACTTCATCGCCCGTCGCGGTCCTGGT
ACGTTCCGTGCAGGGCTACCGCTCCTGCCGTGTAAGATTGCTGATCACTT
GCAGGAAATAGACAGGCATTTTTTTTCTGGACTCGTCAACAGCACCCTTT
TCGCTGTTGAATATGACGATGTTTACCACCCCCCCCCCCGTCCCGACTTT
CAAAGCTCCCAGGGTAGCTGCGATGGTACATCATCTGATGAGTTCTACTG
TAAACATAGAAACACTAGTATGTTGATGTATCCTGTTCTTTGTGTTCGTT
GCCAATCCACTCCGGATCTTCGTCTGCAGAGAGACGAGCACATTGATGTG
TTCGTAAGGAGTAATATAAAAAACTCGATTTGTCCGATCGGTCGAATGGG
TCAGTGCAGAAGCAAGATACCGTAGTGAGATATTCTACACATGTACGTCG
CATACTTGCACCAGGTTATACCAGGTACACACTTTCGGAAAACTCCCGAC
TACGTCTTTCCAATGCCGCCCGTCTTGACGCTGGCAGTCGCTGGAAGAGA
TCGAGGTCTGTACGAAGTAAGTCGGTCCAATTCTGCACACGGCACTACAG
CAGCAAGCCTCGGATACTGCTGTACATGACATGTTCATTTCTCGAAAAAG
TACATGGCTTGGCAATGCAAACGTTCACTTACAGGGCTATGATACGTATT
TGCAAGGTTCATCCATCCCTCACACTCTTCTAAAACGTGAATGCGTTCGA
CATGAAGCAGTCCGCTGTCCGGGGCATATCTATCGCAGTGATATCGCACA
TACGTGCTCATGCGAACGGCAGTTGCGTTGGTTGTTCCCTACTCCTACCT
ACATGCGTCAACAAGTTACAGTGATCAGAAAATGTGTGCATTACTTTCCG
GATTGCGCCGCCGCGTCAAAACTCGGCGGTTGCAAGAGCTTGGGCCTCAA
AGCTTTGAAAATACGAGAACTTGAGCACAAACGGTGATGCCTGGTTTGGA
ACCCCGGCACTTATAATGACATGCTTCGTGTAGCGGTTGTTGGCAGCCCA
CAGATAATAATTCGGAATCTTCTTAAGTGGTGGCGCCATCTGTACCTTTG
TTGCGTTGCCCGTCTAGAATATGACGATTCCGCAGCGAAGGCAAATTTCG
TCAACGCCAGAACTGACGCATCAACGGATCAAGGGGCGGAGGCGGTTCTA
CAAGCATGTTACTATTCGGGAGAAAGTGCGGGACAACAGCAACAGCAACA
ACGAGGAGGGCAAACACGATAGACGGTGGGAAGTGCTGCTCGATAGCCGC
GTCCTCAAGACCCCCGGGCGCAGGTCACTGGAGGTGATGCTCTATTTGGT
AAATTAAGAGACAGTATGCAGTATGCATGTCAACGTGGAACAAACCCCAA
CACGCACACGTTGAATCCTTACAGAGCCCACTTTTACTTTGGCGTTCGAT
GACGGCCACGTTTTTGGCCAGCCATGACGGCGGCCGCGGGGTGAGTGAGA
TACGTGCACACACGCAGGACATATCCTTCGCCTTACAAGAGACCTCCCAG
TCAAAGCTGCTGTCGTTCTTTTTGCCTGCATGTCAAAACACACGTGCGGC
GTCAAACGCCGTCGTCAAACTAATACCAATAACGGCACCGCTGTACCAGC
TGATACCTGGATAGTTTTTACGGTAAATGGGACGCGCCCCCCCCACCACT
CGTCCATCCAATCACCCACCCTACTACCCCGCCCGCTGCTGCTTTTGGGT
CAGTTTGATAGTTCCGAGTTGGCCATGGCAGTAGCTGGGGAGTGGGATAC
CCAGGTTACATCCAAGGGGATCGAGCCAGCCGTAATGCCACTGATGGCTC
TAGCCTCCACGGCCATCGACCAGGTCAGCGAGCCCCTTAACCCGACTCAC
ATCTAATAGTGTTGACTCCAAAACCGGTGCCCTTGAGGAGGAATATATAT
ACTGAAGTGCGCTTTTATGTATACATTTACATAGAAATGCCAGCCGGCTT
TGGAAGTACAATGAAACTTAGGAGAAATGGTTTGGGATAGGAATAGTAGC
AACAACGATTGCTTTGTCGTCCGTCCATCTATTCATTCGTCGGCTCCGCG
TAAGCTGCTGCACACACGACTTCAAGCGGCACACACAAAAATATCGGATT
GATTGTTGTCAACACACCAGCGTCGAACGGAGCCTCCTTCTCATCGTCGC
GAGTTGATTTTATTTTGGCTCGAGTTGAGTTGAGTTGAGTGGGGTTGATT
TGGTTTTAGTTAAGTTCAGTTGAGTTTAATTTGAGTTTGAGATGAGTTTA
GTTGAGTTGAGTTCAATTAAGTTGAAATGAGTCGAGGTGGGTGAAGATGA
GGTGAGGTCAGGTGATTTGTCAAATGACGCGCGCACATGTATGACATGAT
AGATAAATGCCACCTTTGGCCGTCCAATAAACGAAATTTTTATTTTACGA
ACCGATTGAATTGTCTACCCAACGCACCGTACAGCTCATCACAGCGCACC
TCACGCAGCATACCTTCCGCCTCGTTTGAACTTCTCGTTCAACCACCAAC
CGACATGGGAGTACCAACCATACCACAATACCCCCCCCCCCCCCCCCCCC
CCAACCTACACACACTCCGTAAGGAGGGAGGGGTGCACCGATAGCAGGAA
GGAGGCAAAACAAGATAGGCAGACGTGCTCACCTGATGAATCAGCTCTTG
GATATGACTAAGCGAGCATGCTTGTGGCCCAAACAGGGAGGAGCTACCCT
GTTGGAAGACGTTACGGGCATTGATGGGTTTTGACGTGGAAACGTTCAAT
TTGGCGCAAAAGATAGCGCGGAAGCGATCGCTGTAACAGGAGACACGTGG
TGGCTACAATGGGCCATCCAGGGTAGAAATAAATCATGCAAGTAGTTCTT
GTGGATGTAAGGTATGGGAGAAACGTACACAACGAGCACCCAAATGTTGC
TTTTGATTTGGTTTGGTTTGGTGTGGAGTAGTGTGGTCGTGAGTCACTCC
ATTGTATGGCAGGAGTACTGTAGGGACGAACGGTACTCCAGCTCGAAAGG
GATGCAGGCGTTATCAGTGGTCGAATATCACCCAAAGGCAGGCAGGCAAC
AACGTAACAGACAGCAGTACTCACTAGAAGTCGCGACACTTGAAAACAAA
ATCAAGTCATTTGGAGCTGTCATCCATGCGCAACAAAGTGCGCACGAGAT
GCCTAAATCCGCCTCACGAGCTGTTGCTGGTGGGGGACGCAGCCCACACT
TTCTGCGACACTCCCGGAACTCATATCATACATCACACGGGCGCTTCGTT
CGCGCTTGGGGCAAGCGACGTCTGCCTGGTCTTTCCGGTGGAAACCCCGG
CGTGCTCCGTCCTGTCCCAATTTCTTGCAGGGATCTGAGGTCTAAAACCT
ATCGACTACCTTGTACGGCCTACGTGATCATGAGTACACCCGCCTCTTTG
CCGTACTGGCATTCACTGCTGTATTCTGTTGGTTTGGGTTGGGTTCCAGG
TGGCTTCGGACAGAGAGAAGACTATCAGCACCTGCCTCAAGTACCTGCCG
ACGGATACAGTGTGGTAAGAGGACCCGGCTTTGGTCTTTGGTCTGGCGCT
GTTTACTTGCACTTCATCGGAAGACGAAAGTTAGCTTTCTTTCCTTACCT
CACACCGAGAATGTGCTGCTTAATGTCGGAGTATGTGCGTGGTGGCTCCC
ATCTTTTCTGGGCGCGAGTCTACATAAAGCCTTTCGGCAAGTGTATGTGG
GCGCAACAGCCAGGGCTGGTCAAGCAGGACCTATTTCTTTTGTACGAGTA
CCCACCATAAATATAGCATCCGCTTTTCCTCTTGTCATATCATGATGTTT
TTATCTCTCGCAATGCCACATCATATGTAACTGTCAGTTTAACGATTTGT
TTTCTCCTAATGCAATATTCCCAATGTAACTGTCAGTTTTCTTTCCCCAG
ACCCTGACCCGGTGGTGGCTCGACGCCAACGTCAGCTGTGGGCGCCCCTT
CGCGACTGGGCCGGAGAGGTGCGGAACTGAAGGAGCGAGCACGTGCGCGC
GACGGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTCTGCCTGACT
TGTCTTACTTTTTTCCGTAACAGAGAAATGTATCTCTATCCAGCGCGTGA
TGTTGATTTTGCGCTCTCTATTTTTTTTTATTTCATCAAGAAGTCCGGGG
TTGTGTGCGTGTGTATGTGTGTGTAGGGTTGGTTCGCTTTGCTTCAATTG
TCTTTCTTCACGAAACAATACCGAAACCAAGCGTGGATGGCGAAGGCAAG
TCAAGAGCGAAACGCGGAAGGTTGGAAGAAAATAGAAGACGTATATGTAC
TTGACTGCCTGAGTGCTCTCTAAACATGGCATTCGATCTTACCTGTACTG
CTGTATTGCGTTATTATATGGCGAAAATTGCAACGTCCTTTTATTCATTG
CCTGCCTGCCTTTGGGTGGTATTCGACCATTGACCACGCCTGCACCCCTT
TCGAGCTGAAGCACCGTTCAATCCCACAGTGCTCCTAGACAGTGGAGTCA
GTCGCCACCACACCACATAACACCAACACCGACACCAACACCAACATTTG
GGCCCTCTGAACGCTCAGTTCTGCCATATGATTTCGTGCATTCATGAATA
TGTTGCACGTTTTGACCCCTCCCTGCGTGTCCTCTTGCGGCCGCCGAATA
TCACCTGTTTCGTGGCGATTGTTTTTGCGGTGCTACATGTGCAAAGCACG
ACCAAATGTGTTTCCATGCACTTCGCTTCGTCTGTTTTGTTTTGCCTCCT
GCTGTGGCTGGACGCACCACCGATTGATTGCGATCGCGCCTGTTTGTGCT
ACCTACCTGCTGTGGCCACCATGCCCCCCCGATTTCTGCGATCGTTTTTC
GGTGGCGCAATGATATGAATGAAGCATCTAACCAGTGTGTGAAAAACTGC
TGCTGCTGTGCGTCTGCGGGGGGGGGATGTGTGGAAGGTACTTAGTAGAT
ACTGGAACACACCAACACACCTGCTGCATTATCTGTATTATTTTTTTCAC
GATGACATCAAAACAGCAGTAGTACTGACTGCAATGTATTCGTCTCTCCT
CTGGGCGAGGATCTATTGCAGCAGTAGACACAACGAACGTAACGTGATAC
GGTGTACTGTACGCCTAACTGCTGTGCTTTTTCGTATGACTCACACCGCA
CAGGCGCTAGGGATTCCTGTCGCAACAACCACGGAGATTCACCGCAAGCC
AGAACACCCCCCTGAGTCGTTGGCACAAGCGAGGAACCTGCTGGAGTCGC
TGGACGAGTGGGGGCTCGCCGCTGTGCAGAGCGTGACGATGGAGTGCAAG
AGCCTGGTGATCGCGCTGGCGTTGCTGTTTCGGAAGACCACCGTGGAAAA
GGTGAGAGAGAACAAAACAAAAAAAATGTCGTTTATGTGACCGCGTCCCC
TCCCCCCCCCTCAAAACCTCCGTATTGTAGTTAGGCGTCACATGGGAAAA
AAGAAAAGAGCCCCCAAATGCTGGCGGTGTCTCTGTGTGGCGTAGGAACT
GTGCTCCGTCTGTGTCGAAAGAGATGCGCAGGTACAATTGGTCAATGGTC
AAATGGCTTCAGGCGAACGACATATTAATCCCCCCCCCCTCCTCCCGCCG
CCCCTTTTTTGGCTGGAACGGAATAATACTTCGAAGTATGAGATAAGATA
CGTGCGGGCGGGGCGTTTTTTTTGCTTTACGGGCGATGCGGCAGTTTTGT
ACGCGTACACGTTGGGTGTGGGTGGTGGTGCTCATAACAGGTGTAATGCA
TGCGTGGTCATTGACGAAATGGTAAATGCAAGCAGCAGATGAGGATTGGC
TGATTTTTCTCGAGGGCTTTTGTCGAAAGCGAAAAAGGGTGTGAAGACAT
TTACGATACGTTTGTTGGATTATCTCTTCTTTTGTTTTGTTTGGTCCTCC
ACATCCTTACCGTTGGAAAGAAGACAGGGAGCCCCTCTAGGCGCGCGCCT
TATCGTGTACCTGACACCCAGGTGTTGTTGTTAGTATTTTTATTCGAGGC
AAGTTCTTTATTATCGTGCCTCGGCCTTTCGTGCGCGATTTTGACGATGA
GCTAGTAACTGCGAGACACAAGAAAACAACAACAACAACAACAACAACAA
CAACAACAACAACAACAACAACAACAACAACAATTGCAACAACAAAAACA
ACAACTTCAAAACAACAACACTACCACTACCACCACCAACAACAACACCA
ACAACACCAACAATACCAACAACAACAGCAACACGACAAACAACAAACAC
AAACACAACAACAAGCACAAGCACAACAACAACAAACAACGACCTGTGCG
TTTATTGACTTGACCCCGTCCCGACAGGCTTTCGACGCGGCGCGGCTCGA
GGAGGAGTACAACGTGGAGCGCTGGGGCATGATCGAGGGCGGACACGACA
TGGACCGAGGCAACACCTCCCTCGCGCTGACCGCGGCTTCGACGCTCATT
TGGCTCAGGAGCACCCCTTTGCCAAAACCCTCTCCGTGGAAGTAGGCGTT
TGGAGTGGAACGAAGGGGGGGGGGTACTCATGTGTTGCTTACTGACAGAA
AAGCTGCCCGCAGTTTTCTGAAACGATTTGAGTACGTACTTTCCCCCCCC
CAAGAGAGAGAGAAAAGGTGCCCGCAGTTTTCTGATTGGTCAATTTTTTT
AAAGGAGATTTTTTATTTTTTTCAGATTGGCCAAAAATCCCTGGTCGACA
TGACGTGTCATCTACGGCGGGTTTACTTTTTTTCCAGAAGGGTCAACATG
TTTCAATCTGACCGTGGATGATGGTGCTGTTTGTTGTTGGTGATGATTGG
TCAATTTTGACATCATCAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1253:28389..35957+

>mRNA_P-littoralis_Contig1253.3.4 ID=mRNA_P-littoralis_Contig1253.3.4|Name=mRNA_P-littoralis_Contig1253.3.4|organism=Pylaiella littoralis U1_48|type=CDS|length=1089bp|location=Sequence derived from alignment at P-littoralis_Contig1253:28389..35957+ (Pylaiella littoralis U1_48)
ATGAACACATCCGCGATACATCCCGCATGTCTGGTGCTCTCATCTGGACT
CAAAAGGCGATCGTATCAGCTGTGTTCCAGATCTCTCGCAGGTCGAGAAC
CAAGACATGGTCTTCAGCAACACCATCATCTGTGCACTTCGCCGTCAGTA
CTGCTGCTGCATCATGGTGTCAGTGCCAGCAGCACTTCATCGCCCGTCGC
GGTCCTGGTACGTTCCGTGCAGGGCTACCGCTCCTGCCGTAATATGACGA
TTCCGCAGCGAAGGCAAATTTCGTCAACGCCAGAACTGACGCATCAACGG
ATCAAGGGGCGGAGGCGGTTCTACAAGCATGTTACTATTCGGGAGAAAGT
GCGGGACAACAGCAACAGCAACAACGAGGAGGGCAAACACGATAGACGGT
GGGAAGTGCTGCTCGATAGCCGCGTCCTCAAGACCCCCGGGCGCAGGTCA
CTGGAGTTTGATAGTTCCGAGTTGGCCATGGCAGTAGCTGGGGAGTGGGA
TACCCAGGTTACATCCAAGGGGATCGAGCCAGCCGTAATGCCACTGATGG
CTCTAGCCTCCACGGCCATCGACCAGGTGGCTTCGGACAGAGAGAAGACT
ATCAGCACCTGCCTCAAGTACCTGCCGACGGATACAGTGTGTTTTCTTTC
CCCAGACCCTGACCCGGTGGTGGCTCGACGCCAACGTCAGCTGTGGGCGC
CCCTTCGCGACTGGGCCGGAGAGGCGCTAGGGATTCCTGTCGCAACAACC
ACGGAGATTCACCGCAAGCCAGAACACCCCCCTGAGTCGTTGGCACAAGC
GAGGAACCTGCTGGAGTCGCTGGACGAGTGGGGGCTCGCCGCTGTGCAGA
GCGTGACGATGGAGTGCAAGAGCCTGGTGATCGCGCTGGCGTTGCTGTTT
CGGAAGACCACCGTGGAAAAGGCTTTCGACGCGGCGCGGCTCGAGGAGGA
GTACAACGTGGAGCGCTGGGGCATGATCGAGGGCGGACACGACATGGACC
GAGGCAACACCTCCCTCGCGCTGACCGCGGCTTCGACGCTCATTTGGCTC
AGGAGCACCCCTTTGCCAAAACCCTCTCCGTGGAAGTAG
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