mRNA_P-littoralis_Contig1251.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1251.4.1
Unique NamemRNA_P-littoralis_Contig1251.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1251.4.1 vs. uniprot
Match: A0A6H5JGE4_9PHAE (Centrosomal protein of 44 kDa n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGE4_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 2.300e-28
Identity = 56/64 (87.50%), Postives = 59/64 (92.19%), Query Frame = 1 
Query:   70 GNPWDGIVSGDPRAALVVLHWILLDMSPLFAELLVDRDYP-LSSLTDFKFVATALRMLRDEFNC 258
            GNPWDGIVSGDPRAALVVLHW LLDMSPLFA LL+DRDY  L+S TDFKFVAT+LRMLRDEFNC
Sbjct:   56 GNPWDGIVSGDPRAALVVLHWTLLDMSPLFATLLLDRDYAGLTSATDFKFVATSLRMLRDEFNC 119
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BLAST of mRNA_P-littoralis_Contig1251.4.1 vs. uniprot
Match: D7G0L5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0L5_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 1.570e-12
Identity = 33/39 (84.62%), Postives = 36/39 (92.31%), Query Frame = 1 
Query:  145 MSPLFAELLVDRDYP-LSSLTDFKFVATALRMLRDEFNC 258
            MSPLFA LL+DRDY  L+SLTDFKFVAT+LRMLRDEFNC
Sbjct:    1 MSPLFATLLLDRDYAGLTSLTDFKFVATSLRMLRDEFNC 39
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1251.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JGE4_9PHAE2.300e-2887.50Centrosomal protein of 44 kDa n=1 Tax=Ectocarpus s... [more]
D7G0L5_ECTSI1.570e-1284.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1251contigP-littoralis_Contig1251:14847..15105 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog67593.Physo157844
PFAMsCEP44
Model size259
Max annot lvl4776|Peronosporales
KEGG koko:K16761
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.71e-09
EggNOG OGs28WZA@1|root,2R3RQ@2759|Eukaryota,3QFQ1@4776|Peronosporales
DescriptionCentrosomal spindle body, CEP44
Cds size258
COG categoryS
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789551.5760124-CDS-P-littoralis_Contig1251:14846..151041680789551.5760124-CDS-P-littoralis_Contig1251:14846..15104Pylaiella littoralis U1_48CDSP-littoralis_Contig1251 14847..15104 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1251.4.1prot_P-littoralis_Contig1251.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1251 14847..15104 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1251.4.1

>prot_P-littoralis_Contig1251.4.1 ID=prot_P-littoralis_Contig1251.4.1|Name=mRNA_P-littoralis_Contig1251.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=86bp
PAQAQVAPAAAGGGGGSGNGTPTGNPWDGIVSGDPRAALVVLHWILLDMS
PLFAELLVDRDYPLSSLTDFKFVATALRMLRDEFNC
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mRNA from alignment at P-littoralis_Contig1251:14847..15105+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1251.4.1 ID=mRNA_P-littoralis_Contig1251.4.1|Name=mRNA_P-littoralis_Contig1251.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=259bp|location=Sequence derived from alignment at P-littoralis_Contig1251:14847..15105+ (Pylaiella littoralis U1_48)
CCAGCCCAGGCACAAGTCGCACCAGCAGCAGCAGGAGGAGGAGGAGGTAG
CGGTAACGGAACACCTACAGGTAACCCCTGGGACGGGATTGTCAGTGGCG
ATCCGAGGGCGGCCCTAGTGGTGCTACACTGGATCCTGCTTGACATGTCC
CCCCTCTTCGCAGAGCTACTCGTGGATCGGGACTACCCACTGAGCAGCTT
GACAGATTTCAAGTTCGTGGCGACAGCCTTGAGGATGCTGCGGGACGAGT
TCAACTGCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1251:14847..15105+

>mRNA_P-littoralis_Contig1251.4.1 ID=mRNA_P-littoralis_Contig1251.4.1|Name=mRNA_P-littoralis_Contig1251.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=258bp|location=Sequence derived from alignment at P-littoralis_Contig1251:14847..15105+ (Pylaiella littoralis U1_48)
CCAGCCCAGGCACAAGTCGCACCAGCAGCAGCAGGAGGAGGAGGAGGTAG
CGGTAACGGAACACCTACAGGTAACCCCTGGGACGGGATTGTCAGTGGCG
ATCCGAGGGCGGCCCTAGTGGTGCTACACTGGATCCTGCTTGACATGTCC
CCCCTCTTCGCAGAGCTACTCGTGGATCGGGACTACCCACTGAGCAGCTT
GACAGATTTCAAGTTCGTGGCGACAGCCTTGAGGATGCTGCGGGACGAGT
TCAACTGC
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