mRNA_P-littoralis_Contig125.129.1 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig125.129.1 vs. uniprot
Match: A0A6H5KQM0_9PHAE (AP2 protein ( ERFprotein ) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQM0_9PHAE) HSP 1 Score: 459 bits (1182), Expect = 4.710e-146 Identity = 316/562 (56.23%), Postives = 347/562 (61.74%), Query Frame = 2
Query: 152 MTALIADTSPILRNIPSDPPADHRHSFEFSPSPMPGRYLSEGN-NQDARAHSP--HGYNPREVPTLYAQHYGYTMAGAFAHHNPGAPA-------RLAVK---SCRCQR-PCSCNISDSKTAQXXXXXXXXXXXXXXSQRSMWRNNDSNSTIAVTARPDLFHGETSAHSMKTGLTVVSLSSAPSRSPSPSA-VLAQHRRD-SRHVMP-TIELGSSSSTSASTSTPKKSDWENLLGAVDLELRAQERAELVPDSASTTSLPTQHHYTHAINAAHQHHRDSHIKYAQQQXXXXXQPQLHHRSAAASVSPEFGPVDSTPR---HHHRRGAAMDSISGGEPAYSGTTADAACLLVTLPQRMLDRVSQHHQPASTAPXXXXXXXXXXXG-------------VAVPLPALVSASGPPVTPVRVQASGRRGPRGQSRFKGVCITRAGKWRAVIYIGRKQKYLGVFDSEFDAARAYDAAALQHFAEGAKLNFPDGIEQQLNDLSSGGXXRPFAXXXXXXXXXXXXXXXXXXXXXXXXXXXDTGAASSGRGKRSRRSAFGEHDEDQWVRE 1738
MTALIADTSPILRNIPSDP AD R SFEFSPSPMP +YLSEG QD R HSP H Y REVP LY YGY + G+FAH +P PA +LA K SCRCQR CSCN S S+TAQ +MWRN+ TARP FHGE A ++V SAPSRSPSPSA +LAQ+R+ S V+P TIEL SS S KKSDWENLLGAVDLELRAQ+R++ VPDS T +P+ HHY AINAAH H++ + A Q + AAASVSPEFGPV + P H YSG+TADAACLL TLPQRMLDR XXXXXXXXXXX V + PALVSASGPPVTPVRVQASGRRGPRGQSRFKGVCITRAGKWRAVIYIGRKQKYLGVFDSEFDAARAYDAAALQHFAEGAKLNFPDGIE+QLND+SS RPFA A S KRSR++AFG+HDED W RE
Sbjct: 1 MTALIADTSPILRNIPSDP-ADRR-SFEFSPSPMPSQYLSEGTARQDHRRHSPSPHNYTAREVPALYPHRYGYNIGGSFAHSDPEVPAVAEKQQQQLAFKPTSSCRCQRRQCSCNSSPSETAQKDSSSSEPP-------HAMWRNSKGGDANMTTARPSFFHGEAPAQQPPAAVSV----SAPSRSPSPSAAILAQNRQQHSSRVLPRTIELTSSPS--------KKSDWENLLGAVDLELRAQQRSKFVPDSTPATPVPS-HHYARAINAAHLHYQHQPLDDAPPLLTGGGYTQQ--QRAAASVSPEFGPVKTAPAPAGRHXXXXXXXXXXXXXXXXYSGSTADAACLLATLPQRMLDRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGIMPPALVSASGPPVTPVRVQASGRRGPRGQSRFKGVCITRAGKWRAVIYIGRKQKYLGVFDSEFDAARAYDAAALQHFAEGAKLNFPDGIERQLNDISSVSG-RPFATAGAGGAAAPRSCTPPATYLEGDAAAAP--ALPSPTAKRSRKTAFGDHDEDGWARE 535
BLAST of mRNA_P-littoralis_Contig125.129.1 vs. uniprot
Match: D8LFR4_ECTSI (Pathogenesis-related transcriptional factor and ERF n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFR4_ECTSI) HSP 1 Score: 370 bits (951), Expect = 9.840e-114 Identity = 259/495 (52.32%), Postives = 282/495 (56.97%), Query Frame = 2
Query: 152 MTALIADTSPILRNIPSDPPADHRHSFEFSPSPMPGRYLSEGN-NQDARAHSP--HGYNPREVPTLYAQHYGYTMAGAFAHHNPGAPARLAVKSCRCQRPCSCNISDSKTAQXXXXXXXXXXXXXXSQRS------MWRNNDSNSTIAVTARPDLFHGETSAHSMKTGLTVVSLSSAPSRSPSPSA-VLAQHRRD-SRHVMP-TIELGSSSSTSASTSTPKKSDWENLLGAVDLELRAQERAELVPDSASTTSLPTQHHYTHAINAAHQHHRDSHIKYAQQQXXXXXQPQL----------------HHRSAAASVSPEFGPVDSTP--RHHHRRGAAMDSISGGEPAYSGTTADAACLLVTLPQRMLDRVSQHHQPASTAPXXXXXXXXXXXGVAVPLPALVSASGPPVTPVRVQASGRRGPRGQSRFKGVCITRAGKWRAVIYIGRKQKYLGVFDSEFDAARAYDAAALQHFAEGAKLNFPDGIEQQLNDLSS 1546
MTALIADTSPILRNIPSDP AD R SFEFSPSPMP +YLSEG +QD R HSP H Y REVP LY YGY M G+FAH +P P + XXXXXXXXXX S MWRN+ TARP LFHGE A ++V SAPSRSPSPSA +LAQ+++ S VMP TIEL SS + KKSDWENLLGAVDLELRAQ+R+E VPDS T +P+ HHY HAINAAH HH Q Q P L H+ AAASVSPEFGP+ + P RH PAYSG+TADAACLL ASGRRGPRGQSRFKGVCITRAGKWRAVIYIGRKQKYLGVFDSEFDAARAYDAAALQHFAEGAKLNFPDGIE+QLND+SS
Sbjct: 1 MTALIADTSPILRNIPSDP-ADRR-SFEFSPSPMPAQYLSEGTASQDHRRHSPSPHSYTAREVPALYPHRYGYNMGGSFAHSDPQVPVAVEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAQKDSSSSEPPHAMWRNSKGGDANMTTARPGLFHGEAPAQQPPAAVSV----SAPSRSPSPSAAILAQNQQQHSSRVMPRTIELTSSPA--------KKSDWENLLGAVDLELRAQQRSEFVPDSTPATPVPS-HHYAHAINAAHLHH--------QHQPLDDAPPLLTGXXXXXXXXXXXXYTQHQPAAASVSPEFGPIKTAPAARHXXXXXXXXXXXXXXGPAYSGSTADAACLL--------------------------------------------------------ASGRRGPRGQSRFKGVCITRAGKWRAVIYIGRKQKYLGVFDSEFDAARAYDAAALQHFAEGAKLNFPDGIERQLNDISS 416
BLAST of mRNA_P-littoralis_Contig125.129.1 vs. uniprot
Match: A0A835Z3I9_9STRA (AP2/ERF domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3I9_9STRA) HSP 1 Score: 119 bits (299), Expect = 7.090e-26 Identity = 57/66 (86.36%), Postives = 61/66 (92.42%), Query Frame = 2
Query: 1307 QASGRRGPRGQSRFKGVCITRAGKWRAVIYIGRKQKYLGVFDSEFDAARAYDAAALQHFAEGAKLN 1504
QASGRRGPRGQSRFKGVCITRAGKWRAVIYIGRKQKYLGV+DSE AARAY+ +AL+HF GAKLN
Sbjct: 227 QASGRRGPRGQSRFKGVCITRAGKWRAVIYIGRKQKYLGVYDSELQAARAYNDSALEHFGAGAKLN 292
BLAST of mRNA_P-littoralis_Contig125.129.1 vs. uniprot
Match: A0A6V1UZI2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1UZI2_HETAK) HSP 1 Score: 117 bits (293), Expect = 2.020e-25 Identity = 52/72 (72.22%), Postives = 67/72 (93.06%), Query Frame = 2
Query: 1301 RVQASGRRGPRGQSRFKGVCITRAGKWRAVIYIGRKQKYLGVFDSEFDAARAYDAAALQHFAEGAKLNFPDG 1516
RVQ++GRRGPRGQS+FKGVC+TRAGKWR+VIY+GRKQ YLGVF++E +AA+AYD +A+++F +GA LNFPDG
Sbjct: 137 RVQSAGRRGPRGQSQFKGVCVTRAGKWRSVIYVGRKQLYLGVFETEQEAAKAYDNSAVKYFGDGAVLNFPDG 208
BLAST of mRNA_P-littoralis_Contig125.129.1 vs. uniprot
Match: A0A7S3Y6J2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6J2_HETAK) HSP 1 Score: 117 bits (293), Expect = 2.740e-25 Identity = 52/72 (72.22%), Postives = 67/72 (93.06%), Query Frame = 2
Query: 1301 RVQASGRRGPRGQSRFKGVCITRAGKWRAVIYIGRKQKYLGVFDSEFDAARAYDAAALQHFAEGAKLNFPDG 1516
RVQ++GRRGPRGQS+FKGVC+TRAGKWR+VIY+GRKQ YLGVF++E +AA+AYD +A+++F +GA LNFPDG
Sbjct: 150 RVQSAGRRGPRGQSQFKGVCVTRAGKWRSVIYVGRKQLYLGVFETEQEAAKAYDNSAVKYFGDGAVLNFPDG 221
BLAST of mRNA_P-littoralis_Contig125.129.1 vs. uniprot
Match: D7FLT6_ECTSI (AP2/ERF domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLT6_ECTSI) HSP 1 Score: 112 bits (279), Expect = 2.030e-22 Identity = 59/84 (70.24%), Postives = 67/84 (79.76%), Query Frame = 2
Query: 1319 RRGPRGQSRFKGVCITRAGKWRAVIYIGRKQKYLGVFDSEFDAARAYDAAALQHFAEGAKLNFPDGIEQQLNDLSSGGXXRPFA 1570
RRGP GQS FKGVCIT AG WRAVIY+ RKQKYLGVFDSEFDAARAYDAAA H G++LN PD IE++L +LS+ +PFA
Sbjct: 304 RRGPPGQSSFKGVCITPAGTWRAVIYVDRKQKYLGVFDSEFDAARAYDAAARVH-CPGSQLNNPDQIERELYELSAA-DGKPFA 385
BLAST of mRNA_P-littoralis_Contig125.129.1 vs. uniprot
Match: A0A6H5KY97_9PHAE (AP2 protein ( ERFprotein ) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY97_9PHAE) HSP 1 Score: 112 bits (279), Expect = 7.470e-22 Identity = 58/84 (69.05%), Postives = 69/84 (82.14%), Query Frame = 2
Query: 1319 RRGPRGQSRFKGVCITRAGKWRAVIYIGRKQKYLGVFDSEFDAARAYDAAALQHFAEGAKLNFPDGIEQQLNDLSSGGXXRPFA 1570
RRGP GQS FKGVCIT AG WRAVIY+ RKQKYLGVFDSEFDAARAYDAAA + + G++LN PD IE++L++LS+ +PFA
Sbjct: 421 RRGPPGQSSFKGVCITPAGTWRAVIYVDRKQKYLGVFDSEFDAARAYDAAA-RVYCPGSQLNNPDQIERELHELSAA-DGKPFA 502
BLAST of mRNA_P-littoralis_Contig125.129.1 vs. uniprot
Match: A0A835YVU4_9STRA (AP2/ERF domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVU4_9STRA) HSP 1 Score: 92.0 bits (227), Expect = 1.230e-16 Identity = 50/78 (64.10%), Postives = 54/78 (69.23%), Query Frame = 2
Query: 1310 ASGRRGPRGQSRFKGVCITRAGKWRAVI-------------YIGRKQKYLGVFDSEFDAARAYDAAALQHFAEGAKLN 1504
A RRGPRGQSRFKGVCITRAGKWRAVI +IGR+QKYLGVFDSE AA AY+ +A Q F AKLN
Sbjct: 187 AKSRRGPRGQSRFKGVCITRAGKWRAVICEWLAAVAEFLHNHIGRRQKYLGVFDSEVQAAVAYNESAKQFFGAEAKLN 264
BLAST of mRNA_P-littoralis_Contig125.129.1 vs. uniprot
Match: A0A836CI56_9STRA (AP2/ERF domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI56_9STRA) HSP 1 Score: 87.8 bits (216), Expect = 8.110e-16 Identity = 46/81 (56.79%), Postives = 56/81 (69.14%), Query Frame = 2
Query: 1265 LVSASGPPVTPVRVQASGRRGPRGQSRFKGVCITRAGKWRAVIYIGRKQKYLGVFDSEFDAARAYDAAALQHFAEGAKLNF 1507
L SAS P R + RRG +G+S ++GVC+TR GKWRAVIY RKQ YLGVF+SE DAA+A+D AA HF A +NF
Sbjct: 4 LASASSPIKGGPRNPTARRRGRKGKSIYRGVCVTREGKWRAVIYKERKQLYLGVFESEIDAAKAHDRAARYHFGAQAMVNF 84
BLAST of mRNA_P-littoralis_Contig125.129.1 vs. uniprot
Match: A0A836CH07_9STRA (AP2/ERF domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH07_9STRA) HSP 1 Score: 80.1 bits (196), Expect = 6.820e-15 Identity = 36/54 (66.67%), Postives = 44/54 (81.48%), Query Frame = 2
Query: 1346 FKGVCITRAGKWRAVIYIGRKQKYLGVFDSEFDAARAYDAAALQHFAEGAKLNF 1507
++GVC+TR GKWRAVIY RKQ YLGVF+SE DAA+A+D AA QHF + A +NF
Sbjct: 1 YRGVCVTREGKWRAVIYKERKQLYLGVFESEVDAAKAHDRAARQHFGDQAMVNF 54 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig125.129.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig125.129.1 >prot_P-littoralis_Contig125.129.1 ID=prot_P-littoralis_Contig125.129.1|Name=mRNA_P-littoralis_Contig125.129.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=541bp MTALIADTSPILRNIPSDPPADHRHSFEFSPSPMPGRYLSEGNNQDARAHback to top mRNA from alignment at P-littoralis_Contig125:444216..448444+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig125.129.1 ID=mRNA_P-littoralis_Contig125.129.1|Name=mRNA_P-littoralis_Contig125.129.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4229bp|location=Sequence derived from alignment at P-littoralis_Contig125:444216..448444+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig125:444216..448444+ >mRNA_P-littoralis_Contig125.129.1 ID=mRNA_P-littoralis_Contig125.129.1|Name=mRNA_P-littoralis_Contig125.129.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1623bp|location=Sequence derived from alignment at P-littoralis_Contig125:444216..448444+ (Pylaiella littoralis U1_48)back to top |