mRNA_P-littoralis_Contig125.111.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig125.111.1
Unique NamemRNA_P-littoralis_Contig125.111.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig125.111.1 vs. uniprot
Match: D8LFS3_ECTSI (Cytochrome c oxidase subunit Vb n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFS3_ECTSI)

HSP 1 Score: 206 bits (524), Expect = 1.050e-60
Identity = 112/142 (78.87%), Postives = 117/142 (82.39%), Query Frame = 3 
Query:   24 MFSAVARRAGVTVRAAAIMRPQPAAATAAAAAVPALRAGGASALVPQVARFSGQVGDGGIPDIHDTGRQKDEREGATFNRDPIHPPKGSGTKAMPFEVPSEHEERVVGFEHPESHAMYWFPLAAGKLHYVEEIDRYFKLVPL 449
            MFS VAR  GV  RAAA+ RPQP AA A        RA  ++A +PQVARFS  VGDGGIPD HDTGRQK EREG  FNRDPIHPPKGSGTKAMPFEVPSEH+ERVVGFEHPESHAMYWFPLAAGKLHYVEEIDRYFKLVPL
Sbjct:    1 MFSTVARHVGVAARAAAL-RPQPTAAAA-------WRA--SAAALPQVARFSDGVGDGGIPDTHDTGRQKTEREGVGFNRDPIHPPKGSGTKAMPFEVPSEHQERVVGFEHPESHAMYWFPLAAGKLHYVEEIDRYFKLVPL 132
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BLAST of mRNA_P-littoralis_Contig125.111.1 vs. uniprot
Match: A0A6U3QRH7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3QRH7_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.350e-19
Identity = 48/83 (57.83%), Postives = 58/83 (69.88%), Query Frame = 3 
Query:  213 HDTGRQ----KDEREG-ATFNRDPIHPPKGSGTKAMPFEVPSEHEERVVGFEHPESHAMYWFPLAAGKLHYVEEIDRYFKLVP 446
            H  GR+    +DE+ G  TFNRDPI PP G+GTK  P +VPS ++ERVVGFE P  H + WF + AGKLHYV  ID+YF LVP
Sbjct:   45 HQGGRRLQEIEDEKLGLVTFNRDPIMPPVGAGTKENPIQVPSGYDERVVGFEDPTVHQLQWFTMTAGKLHYVSSIDKYFTLVP 127
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BLAST of mRNA_P-littoralis_Contig125.111.1 vs. uniprot
Match: A0A7S1XX62_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XX62_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 4.590e-17
Identity = 48/90 (53.33%), Postives = 59/90 (65.56%), Query Frame = 3 
Query:  192 DGGIPDIHDT--GRQKDEREGAT-----FNRDPIHPPKGSGTKAMPFEVPSEHEERVVGFEHPESHAMYWFPLAAGKLHYVEEIDRYFKL 440
            DG IPDI D   GR+K E +        FNRDPI PP G+GTK  P  VPSE +ERVVGFE P++H + WF L A   +Y+E +D+YFKL
Sbjct:   34 DGLIPDIEDQVFGRRKMELDAEKSGDLLFNRDPIVPPVGAGTKENPILVPSEFKERVVGFEDPDTHQIAWFCLQADATYYIESVDKYFKL 123
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BLAST of mRNA_P-littoralis_Contig125.111.1 vs. uniprot
Match: A0A835ZBD2_9STRA (Cytochrome c oxidase subunit VB n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBD2_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 9.130e-17
Identity = 41/78 (52.56%), Postives = 53/78 (67.95%), Query Frame = 3 
Query:  207 DIHDTGRQKDEREGATFNRDPIHPPKGSGTKAMPFEVPSEHEERVVGFEHPESHAMYWFPLAAGKLHYVEEIDRYFKL 440
            D+  TG++ +E  G  FN   + PP GSGT+  P EVPS  + R VG+E PE+HA+YWF L AGK+H+V  ID YFKL
Sbjct:   48 DVAATGQRGEEVRGTFFNDQALMPPAGSGTREKPIEVPSRLDMRTVGYEDPETHAIYWFNLKAGKVHHVTPIDMYFKL 125
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BLAST of mRNA_P-littoralis_Contig125.111.1 vs. uniprot
Match: A0A6U1NDJ1_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1NDJ1_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 5.060e-13
Identity = 36/72 (50.00%), Postives = 47/72 (65.28%), Query Frame = 3 
Query:  228 QKDEREGATFNRDPIHPPKGSGTKAMPFEVPSEHEERVVGFEHPESHAMYWFPLAAGKLHYVEEIDRYFKLV 443
            +++ ++   + RDP+ P  G GT A P  VPS  +ER VGFE P SH M WF L  G +H+VEEID YFKL+
Sbjct:   52 EQEAKKEVAYVRDPVIPEPGQGTLANPILVPSAMKERAVGFEDPLSHQMQWFVLQEGDIHWVEEIDMYFKLI 123
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BLAST of mRNA_P-littoralis_Contig125.111.1 vs. uniprot
Match: A0A024FVF4_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024FVF4_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.170e-9
Identity = 39/88 (44.32%), Postives = 54/88 (61.36%), Query Frame = 3 
Query:  201 IPDIHD--TGRQKDEREGA-----TFNRDPIHPPKGSG-TKAMPFEVPSEHEERVVGFEHPESHAMYWFPLAAGKLHYVEEIDRYFKL 440
            IPDI+D   GRQ++E E       TFNRDPI   +  G +K  P  VPS ++ R +G  H +S  ++WF L  GK+ YV +I++YFKL
Sbjct:   27 IPDIYDHAVGRQREELEDEKAGIITFNRDPIETDETQGNSKEDPILVPSFNDVRPIGVSHNDSSYVFWFNLQKGKIFYVPQIEKYFKL 114
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BLAST of mRNA_P-littoralis_Contig125.111.1 vs. uniprot
Match: A0A4D9DB47_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DB47_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.900e-9
Identity = 31/62 (50.00%), Postives = 39/62 (62.90%), Query Frame = 3 
Query:  255 FNRDPIHPPKGSGTKAMPFEVPSEHEERVVGFEHPESHAMYWFPLAAGKLHYVEEIDRYFKL 440
            FNRDP+      GTK+ P  VPS   ER+VG+E P  H ++WF L  G L YV +ID+YF L
Sbjct:   93 FNRDPVFALPDQGTKSNPVLVPSGENERIVGYEDPHVHQVFWFKLRKGDLVYVPKIDKYFSL 154
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BLAST of mRNA_P-littoralis_Contig125.111.1 vs. uniprot
Match: W7TKL4_9STRA (Cytochrome c oxidase subunit vb n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TKL4_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.140e-8
Identity = 31/62 (50.00%), Postives = 39/62 (62.90%), Query Frame = 3 
Query:  255 FNRDPIHPPKGSGTKAMPFEVPSEHEERVVGFEHPESHAMYWFPLAAGKLHYVEEIDRYFKL 440
            FNRDP+      GTK+ P  VPS   ER+VG+E P  H ++WF L  G L YV +ID+YF L
Sbjct:  195 FNRDPVFALPDQGTKSNPVLVPSGENERIVGYEDPHVHQVFWFKLRKGDLVYVPKIDKYFSL 256
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BLAST of mRNA_P-littoralis_Contig125.111.1 vs. uniprot
Match: A0A1E7FE28_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FE28_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 5.580e-7
Identity = 32/98 (32.65%), Postives = 58/98 (59.18%), Query Frame = 3 
Query:  183 QVGDGGIPDIHDTGRQKDEREGATFNRDPIHPPKGSGTKAMPFEVPSEHEERVVGFEHPESHAMYWFPLAA-GKLHYVEEIDRYFKLVPL*LDA*ASA 473
            ++G  GI D+ +  ++  E     +N   + PP+G+GT   P  +PS    RVVG++ P+SHAM+WF + +    +Y++++  +FK++P+  D  A A
Sbjct:   87 ELGLDGIEDLDELEQKNIEG----YNDLGLVPPEGTGTFTSPILIPSRRTSRVVGYQDPDSHAMFWFTIHSDNSSYYIKDLGLFFKMLPIPSDEEAHA 180
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BLAST of mRNA_P-littoralis_Contig125.111.1 vs. uniprot
Match: A0A1W0A2M6_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A2M6_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 7.980e-7
Identity = 38/88 (43.18%), Postives = 51/88 (57.95%), Query Frame = 3 
Query:  201 IPDIHD--TGRQKDEREGAT-----FNRDPIHPPKGSG-TKAMPFEVPSEHEERVVGFEHPESHAMYWFPLAAGKLHYVEEIDRYFKL 440
            +P++ D   GRQ DE + A      F+RDPI   +  G +K  P  VPS   ERVVG  H +S  + WF L  GK++YV + D+YFKL
Sbjct:   25 VPNMIDQAVGRQGDELKMAEQGIDLFSRDPIFSEETQGNSKDDPILVPSFQSERVVGISHNDSPYIKWFNLHEGKVYYVPDYDKYFKL 112
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig125.111.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D8LFS3_ECTSI1.050e-6078.87Cytochrome c oxidase subunit Vb n=2 Tax=Ectocarpus... [more]
A0A6U3QRH7_9STRA1.350e-1957.83Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S1XX62_9STRA4.590e-1753.33Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A835ZBD2_9STRA9.130e-1752.56Cytochrome c oxidase subunit VB n=1 Tax=Tribonema ... [more]
A0A6U1NDJ1_9STRA5.060e-1350.00Hypothetical protein n=2 Tax=Fibrocapsa japonica T... [more]
A0A024FVF4_9STRA1.170e-944.32Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
A0A4D9DB47_9STRA1.900e-950.00Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7TKL4_9STRA1.140e-850.00Cytochrome c oxidase subunit vb n=1 Tax=Nannochlor... [more]
A0A1E7FE28_9STRA5.580e-732.65Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A1W0A2M6_9STRA7.980e-743.18Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig125contigP-littoralis_Contig125:387007..388714 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LFS3
Model size1708
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorymitochondrion
Exons1
Evalue9.18e-67
EggNOG OGs2E9H5@1|root,2SFV0@2759|Eukaryota
Cds size429
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789549.5278416-UTR-P-littoralis_Contig125:387006..3882621680789549.5278416-UTR-P-littoralis_Contig125:387006..388262Pylaiella littoralis U1_48UTRP-littoralis_Contig125 387007..388262 -
1680789549.5549235-UTR-P-littoralis_Contig125:388691..3887141680789549.5549235-UTR-P-littoralis_Contig125:388691..388714Pylaiella littoralis U1_48UTRP-littoralis_Contig125 388692..388714 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789549.5443792-CDS-P-littoralis_Contig125:388262..3886911680789549.5443792-CDS-P-littoralis_Contig125:388262..388691Pylaiella littoralis U1_48CDSP-littoralis_Contig125 388263..388691 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig125.111.1prot_P-littoralis_Contig125.111.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig125 388263..388691 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig125.111.1

>prot_P-littoralis_Contig125.111.1 ID=prot_P-littoralis_Contig125.111.1|Name=mRNA_P-littoralis_Contig125.111.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=143bp
MFSAVARRAGVTVRAAAIMRPQPAAATAAAAAVPALRAGGASALVPQVAR
FSGQVGDGGIPDIHDTGRQKDEREGATFNRDPIHPPKGSGTKAMPFEVPS
EHEERVVGFEHPESHAMYWFPLAAGKLHYVEEIDRYFKLVPL*
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mRNA from alignment at P-littoralis_Contig125:387007..388714-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig125.111.1 ID=mRNA_P-littoralis_Contig125.111.1|Name=mRNA_P-littoralis_Contig125.111.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1708bp|location=Sequence derived from alignment at P-littoralis_Contig125:387007..388714- (Pylaiella littoralis U1_48)
CAAACGCCGTGTGCACCAAGGCCATGTTCTCTGCGGTAGCGAGGCGCGCG
GGTGTGACCGTCCGCGCGGCAGCCATCATGCGACCCCAGCCGGCGGCAGC
AACAGCAGCAGCGGCGGCGGTACCAGCGTTGCGGGCAGGTGGTGCGAGTG
CTCTCGTCCCGCAGGTAGCGAGGTTCAGTGGTCAGGTCGGGGACGGAGGC
ATCCCTGACATCCACGACACCGGGCGGCAAAAGGACGAGCGAGAGGGGGC
CACCTTCAACCGTGACCCCATCCACCCACCCAAGGGCTCGGGCACGAAGG
CGATGCCCTTCGAGGTGCCCTCAGAACACGAGGAGCGAGTCGTGGGCTTC
GAGCACCCGGAGTCTCACGCCATGTACTGGTTCCCTCTGGCCGCGGGCAA
GCTGCACTACGTGGAGGAGATCGACAGGTACTTCAAGCTCGTGCCGCTTT
GATTGGACGCGTAGGCTTCTGCCGGCCGGAAAGCCGGAGGAATGGCAGGA
GAGGTGGGACGGGACGGGAGACTGACGGAGCGAGCTATTGCTGTATTGCC
GAGAGGACGAGAAGATTTTGGTTTGGCTGTGTGTGCACGTGTTGCGTGTT
CGCAGGAGGATGTGGCGGGCTCTCGGGCTCAAACGAAGACGGGGTTCCAT
TCAAGCTGGAGGAGGTGGGTTCGCATGTGCGGATGGAGGAGCGGTGTTGC
AGGCGAGGACGGCCTTATGGGGAAGGGAGGACGGCCTTATGGGGAAGGGA
CGTGCACGGCTGCCAGGAAAGCCAGGGACCATGGATCGAAGCTTGAGGCG
TGCGAATGTTTGGCGAGTAGAAAAAAGAACGAGAGAGAGAGGAGAGATCT
GACCTTCTCTTCATTTGACGAGTTGTAAAAGGGTCTGACTTGCCTGTCCT
GTTGCTAGCGTCACTGCCGTTGTTCAATGCAACCCTCATCATGGATAAGT
TCGTGTGCCAAATGACAACCTATGCAGACATTGACTAGAATTTGCCGTGA
GTTGCATGACAGCTGTTTGCCTGTAGTGTCCAGTCAGGAAATAGTCTCCT
TCAGGTTTGGCAGTCGAAGCTGTTGTGCCGCGGGAGCATTTTGCAGCAAA
TTCATGTAGAATGTTCATGCCAATATGCGCGCCGGTGATGTCTCTGTTTT
ATAATGGGATTTTTTCTTTTTTTTTTCTTGGGTCTCGTTTTTTTTTGTCT
TTGGAGGTATAGGGCTACATCAGTGTTCCGAGACTGCTCTGTAGCACTGC
TGTGATCGCTGTACTGCTGCGCGGTACTGCTGTATCTGTAAATCCTTTTG
ATTTGCGGCAAGAGGTTTGGTTGGGGTGGCCTAAAAACAAAAATGCATTG
CTCACAAGGCAATGCTTGCTTTCACGGACTTTTGCTTTCAACCCTCGATG
TGATGCATTATTCTCTCCAATTTACACTTGGTACAAACTCTTTTGTGATA
CACTTGGTAAACACTTTCGCGTCGAAAGAAATACTTCGTATGAAGTGTTT
TTTTGGTTGCTCCGGGCCTCCCCCCCATCCTGACCACCGTCTTCCCCCCA
CCCTGATCACCCCCACGGGCGCTTGAAAGTCATGTGTGTGGGTTTTAATC
GCACTGTGACCGTCGAAATTTGATAACCCGAACGTGTGCTGTATTAGGTT
TGGTGACCGAAGTACTTCGTACGTCCTGAACTCGGCCCCGCTCACACTTT
TCTCGTGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig125:387007..388714-

>mRNA_P-littoralis_Contig125.111.1 ID=mRNA_P-littoralis_Contig125.111.1|Name=mRNA_P-littoralis_Contig125.111.1|organism=Pylaiella littoralis U1_48|type=CDS|length=429bp|location=Sequence derived from alignment at P-littoralis_Contig125:387007..388714- (Pylaiella littoralis U1_48)
ATGTTCTCTGCGGTAGCGAGGCGCGCGGGTGTGACCGTCCGCGCGGCAGC
CATCATGCGACCCCAGCCGGCGGCAGCAACAGCAGCAGCGGCGGCGGTAC
CAGCGTTGCGGGCAGGTGGTGCGAGTGCTCTCGTCCCGCAGGTAGCGAGG
TTCAGTGGTCAGGTCGGGGACGGAGGCATCCCTGACATCCACGACACCGG
GCGGCAAAAGGACGAGCGAGAGGGGGCCACCTTCAACCGTGACCCCATCC
ACCCACCCAAGGGCTCGGGCACGAAGGCGATGCCCTTCGAGGTGCCCTCA
GAACACGAGGAGCGAGTCGTGGGCTTCGAGCACCCGGAGTCTCACGCCAT
GTACTGGTTCCCTCTGGCCGCGGGCAAGCTGCACTACGTGGAGGAGATCG
ACAGGTACTTCAAGCTCGTGCCGCTTTGA
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