mRNA_P-littoralis_Contig125.98.4 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig125.98.4
Unique NamemRNA_P-littoralis_Contig125.98.4
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig125.98.4 vs. uniprot
Match: D8LFS6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFS6_ECTSI)

HSP 1 Score: 184 bits (467), Expect = 3.750e-54
Identity = 100/109 (91.74%), Postives = 105/109 (96.33%), Query Frame = 3 
Query:  171 MAQGSFKKSGGAPKMKGKAGRGNVAAKSRRLVNKGKTAVKKGSWNMPPKHAKALAAAKEDMATTKMINSTNEQQAAAKCFQNQEKLFLKEVKESGRELARDIKRKALKR 497
            MAQGSFKKSGGAPK+KGKAG+GNVAAKSRRLVNKGKTAVKKGSWNMPPK A  LAAAKE+MA TKMINSTNE+QAAAKCFQNQEKLFL+EVKESGRELARDIKRKALKR
Sbjct:    1 MAQGSFKKSGGAPKVKGKAGKGNVAAKSRRLVNKGKTAVKKGSWNMPPKQAAKLAAAKEEMARTKMINSTNEKQAAAKCFQNQEKLFLREVKESGRELARDIKRKALKR 109
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BLAST of mRNA_P-littoralis_Contig125.98.4 vs. uniprot
Match: A0A7S1TQR0_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TQR0_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 8.030e-11
Identity = 45/111 (40.54%), Postives = 67/111 (60.36%), Query Frame = 3 
Query:  231 RGNVAAKSRRLVNKGKTAVKKGSWNMPPKHAKALAAAKEDMATTKMINSTNEQQAAAKCFQNQEKLFLKEVKESGRELARDIKRKALKRKKTRIEEKLEQAKEKVTLVHTN 563
            +G    K +  V K +   KKG+     K  +    A E    +K IN+TNE+  AAK  QN E++   +VK +GR LA++I+R+AL +KKTRIEEK+E+AKE++  +  N
Sbjct:   13 KGKAPPKKKLRVTKTRRNPKKGTAEKMAKRGRERVLALEKAKQSKAINATNERTLAAKAIQNGERIVRTDVKNAGRALAKEIRRQALTKKKTRIEEKIEKAKERLHNIERN 123
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BLAST of mRNA_P-littoralis_Contig125.98.4 vs. uniprot
Match: A0A7R9UB02_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UB02_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 6.780e-9
Identity = 50/126 (39.68%), Postives = 69/126 (54.76%), Query Frame = 3 
Query:  168 AMAQGSFKKSGGAPKMKGKAGRGNVAAKSRRLVNKGKTAVKKGSWNMPPKHAKALAAAKEDMATTKMINSTNEQQAAAKCFQNQEKLFLKEVKESGRELARDIKRKALKRKKTRIEEKLEQAKEKV 545
            AMAQ    K G AP+ K             + V K +   KKG  +   K         E  A ++ IN+  E+  AAK  QN E+L   ++K  G+ELA++I+R+AL RKK+RIEEKLEQAK+K+
Sbjct:    9 AMAQSGLFKKGKAPQKK-------------KRVTKMQKRTKKGGSDKVAKRGLRRLQDLESRAQSRAINANLERVLAAKAVQNGERLLRPDMKSKGKELAKEIRRQALTRKKSRIEEKLEQAKQKL 121
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BLAST of mRNA_P-littoralis_Contig125.98.4 vs. uniprot
Match: A0A836CMQ4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMQ4_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 2.530e-8
Identity = 53/136 (38.97%), Postives = 76/136 (55.88%), Query Frame = 3 
Query:  171 MAQGSFKKSGGAPKMKGKAGRGNVAAKSRRLVNKGKTAVKKGSW-----------NMPPKHAKALAAAKEDMATTKMINSTNEQQAAAKCFQNQEKLFLKEVKESGRELARDIKRKALKRKKTRIEEKLEQAKEKV 545
            MAQG+FK +G    +KGKAG+  +  K  + V   K +   G             N+ P+   AL A K++   TK I+     Q AAK   NQEK+ L +++ SG+ L ++++R AL RKK+RIEEKL  AKEK+
Sbjct:    1 MAQGTFKSTG----LKGKAGKPQIK-KGGKHVAATKASAGLGRXXXXXXXXXXXXNVAPRKPDALQAYKKEKEVTKQIHKQLITQTAAKAISNQEKMELGDIRGSGKALVKEMRRDALTRKKSRIEEKLLAAKEKL 131
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BLAST of mRNA_P-littoralis_Contig125.98.4 vs. uniprot
Match: A0A7S2WKX0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WKX0_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 2.220e-7
Identity = 48/125 (38.40%), Postives = 65/125 (52.00%), Query Frame = 3 
Query:  171 MAQGSFKKSGGAPKMKGKAGRGNVAAKSRRLVNKGKTAVKKGSWNMPPKHAKALAAAKEDMATTKMINSTNEQQAAAKCFQNQEKLFLKEVKESGRELARDIKRKALKRKKTRIEEKLEQAKEKV 545
            MAQG  K            GRG   + S R   K     K  +    PK+   L   K+    T+ IN+  EQ  AAK  Q  E+L  +++   G+E+ARDIKR+ALKRKK R+EEKLE+ + K+
Sbjct:    1 MAQGQLK------------GRGKAKSVSLRKQAKAAQPKKHRAGVAKPKNQARLERFKQRQTVTRQINANIEQLTAAKVCQAGERLKTRDIAAKGKEMARDIKREALKRKKPRVEEKLEKLRAKL 113
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig125.98.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LFS6_ECTSI3.750e-5491.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1TQR0_9STRA8.030e-1140.54Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7R9UB02_9STRA6.780e-939.68Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A836CMQ4_9STRA2.530e-838.97Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2WKX0_9STRA2.220e-738.40Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig125contigP-littoralis_Contig125:363193..366563 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1149
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_001100.1
Cds size501
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig125.98.4prot_P-littoralis_Contig125.98.4Pylaiella littoralis U1_48polypeptideP-littoralis_Contig125 363671..366393 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789549.15691-UTR-P-littoralis_Contig125:363192..3636701680789549.15691-UTR-P-littoralis_Contig125:363192..363670Pylaiella littoralis U1_48UTRP-littoralis_Contig125 363193..363670 -
1680789549.219972-UTR-P-littoralis_Contig125:366393..3665631680789549.219972-UTR-P-littoralis_Contig125:366393..366563Pylaiella littoralis U1_48UTRP-littoralis_Contig125 366394..366563 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789549.1716661-CDS-P-littoralis_Contig125:363670..3638951680789549.1716661-CDS-P-littoralis_Contig125:363670..363895Pylaiella littoralis U1_48CDSP-littoralis_Contig125 363671..363895 -
1680789549.1819272-CDS-P-littoralis_Contig125:364207..3643001680789549.1819272-CDS-P-littoralis_Contig125:364207..364300Pylaiella littoralis U1_48CDSP-littoralis_Contig125 364208..364300 -
1680789549.1956997-CDS-P-littoralis_Contig125:364628..3646841680789549.1956997-CDS-P-littoralis_Contig125:364628..364684Pylaiella littoralis U1_48CDSP-littoralis_Contig125 364629..364684 -
1680789549.2082589-CDS-P-littoralis_Contig125:366266..3663931680789549.2082589-CDS-P-littoralis_Contig125:366266..366393Pylaiella littoralis U1_48CDSP-littoralis_Contig125 366267..366393 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig125.98.4

>prot_P-littoralis_Contig125.98.4 ID=prot_P-littoralis_Contig125.98.4|Name=mRNA_P-littoralis_Contig125.98.4|organism=Pylaiella littoralis U1_48|type=polypeptide|length=167bp
MAQGSFKKSGGAPKMKGKAGRGNVAAKSRRLVNKGKTAVKKGSWNMPPKH
AKALAAAKEDMATTKMINSTNEQQAAAKCFQNQEKLFLKEVKESGRELAR
DIKRKALKRKKTRIEEKLEQAKEKVTLVHTNSSSHTKSLVRFSAWSAWWR
SSCDIWRVFFGTNTLE*
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mRNA from alignment at P-littoralis_Contig125:363193..366563-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig125.98.4 ID=mRNA_P-littoralis_Contig125.98.4|Name=mRNA_P-littoralis_Contig125.98.4|organism=Pylaiella littoralis U1_48|type=mRNA|length=3371bp|location=Sequence derived from alignment at P-littoralis_Contig125:363193..366563- (Pylaiella littoralis U1_48)
TGACTGTAGAATAGCGAAGCTTCGCTATTCTATAGTCATACCCCATAGGT
CGAATAGGGACAAGCAAGCGGCGACCGCAACGCAACACACAGAACACAGA
GTGGGCCACCAAGCCCGACACACCGACTAGAGCACAAACTAAGACCTGAG
TTTTATAGCGGTCGATAGCCATGGCCCAAGGAAGCTTCAAGAAGAGCGGG
GGGGCCCCCAAGATGAAGGGAAAAGCGGGCAGGGGTAACGTGGCTGCGAA
ATCGAGGAGATTGGTCAACAAGGGCAAAACAGCCGTGAAGAAGGGCTGTG
AGTGCCGTGTCTGGGTGTCGTGCTGCTGCTTGTGTTGGTTGTGTCACGAT
CAGATGCTGCTGGGAAGCCGGTGGCTGCCTAGGTTGGCGTCGCTGAGATT
TACATCAGCACAGCAGAGCAAATGGAGAGGACCAACCACTGAGACTACCT
CTGTTCATCTGGTTGGACAGCACCAGTTGCTGCAGTCAACTTTACTTCAG
TACTGCTGCTGTACAGGACCAGGACACCTAAGAAATGCTCTCAGGGTGGG
CAACATGCATTGGCTTGGTTTCTCAGGACCGTCAGAAACTCCTGGGTTAT
CTATATCGGATGACATGGTACTGAAGTTAGCCCAGGAGGCAGCAAGCTAC
GACACGTAACCTCTGCCAAAATTATTTGCGAGCGTCGTGTCACATGTACA
AGAGCAGTAATCCCGCTGCCTGTATGAAAGAGGCATGTACCTGGTCATCG
CAATACAGGAGTGTGTTGTCATCCCATATTCTCTGGCACACAGTAGTGCG
GTGTGGTGAACAAGCGTATCGCACGCACACAAACGACGACGACCCACTTT
TATTGTGTGGACGATTTAGGCGGATGTCATGGGTACCGATTTTTGTGACA
CGGATTTTGATGTTTCAGCCACATTTATGCTTTGGTTGAGCCCCCTTCGC
GACCCCAAGAATGACCGAACACCTCACCACACGACCACACCGCCCTTCCC
TCATGATGACCGGATCGCCACCAGACCACCAAGGCTGTCAAGCCTCTTTT
CTCTACGCTTTTCCGCAGCTTTTGAAGTTGTCGTGAGCTTCTTGTGTGCC
GAGCATGATCAATCCATGCCAGCAAGAGCGTACATTCGTGTGCGACATCA
CACAGATGTTACAACAGTAGGTCTCGTTGGTTTGGTGGCGATCCGGTGAT
CATGAGGGAAGCACGTCGTGACCGTGTGTCGTGAGGTCAGTCTGTCGTGA
AGGAGGCCGTCAATGCATAAACGTGGCATGGATATCGAAGTCCGTGTGAC
AATCCGCACCCAAAACATTTGGACTGGGTCAAATTATGGAGCGTGCACTT
ACAATTGGAGTACAGCAGCCCAGCAAGTGGTTGTGTTTTCCGACAGCATC
CAGCAGTACTGTACTTCACAGCGAGACTACGAGTACCGAATTTCTCTCTT
TGCAAGAGCTTTTTTTGCATTTGAAGCAGTGCCGACTCTGAGAGAGGATG
TATCGGGCTGTTGCTTCACCGTGCTCTGTCTGGCCTGACATCCTTGACCG
CTCCGTCTTTTGTTTTTTCGCCGCAAGGCGTTCTGACCAATCAGGTCACT
GCGTGCTTCCTTCCCATCTCTTGGCATGTCATTATGCTGATCCCAACGTC
GTTGTTGGCGTCTTCCCACTCAATATCTCCGCACGCTATACTGCTGCCGT
TCGTCCTTGAATTAGGTGGAACATGTTACTTCCCTCCCCTGCCCCTTCCT
TCTCTGTATGTGAGCACATGATGCGCCCCACGAAAGAACGTCCTCCTTGC
CGGCCTCTTCGTGCGTGTTGCCCGTCTTTGTCTCTTATTCTTGTCTGCGT
CTCTCGCCCCGGATGTGTGGTCACCACAGCGTGGAATATGCCGCCAAAAC
ATGCGAAAGCGCTGGCGGCTGCCAAGGAAGACATGGCGAGTCACATGAAA
CACATCAGTTGCTGACGAGCAAGCTGCACAACAGTAGAGCTCCATAACAA
GCTACACCAGTCCATGCTCGAAGTTGGATATTTGGCAGATGGTGCACTCT
GTGCGCGTTTTTTAAACAGAGGTTACGAAACTGGCTTTCTCTGGGTGTTG
AAGTAGTTTACGGTGTATGAAAGCTTCGGGGGACAATCTAGGCTGCCAGC
ACTCTCCGGATACAAACGCTGAGTGCGAAGATCCGATGGGGTCTGCCGCG
CTGTGCTCTGTGGGCGATGATGCTTCCAATAATCGTCTTATCTGACATTT
CAACAAACCGCAGGCAACAACAAAGATGATCAACAGCACGAATGAGCAGC
AGGCGGCGGCAAAGTGCTTCCAAAACCAGGAGAAACTGTTCCTCAAGGAA
GTAAAGGTGAGTTATTTGCGCTGATTGTCTTGGAGACGTGATCGGTAAGA
CCAGTGATGCGGTCGGCACTGGGACGATTCCGCAAGGCTTGAGAAGCCCG
TTTGGAATTGCACCACACCGAGAAGGTGAGCAGGCACGACTATAATTTTT
TGTGTCTCTTGTGTCTTCAATTCAAAACCGTGGAATGAAATATCTCCTTC
GCGGCTTTTTGTTTTTCCCTTTGTTGCGCGTGGGAGCTCATGCTCGGCGA
AACGCTGCCGAAATGCCCTAGCGACAACGTCCGCCCCCGGCACCTCGCCT
CTTTCCTCTTTGCGACAGGAAAGCGGCCGGGAGTTGGCGCGCGACATCAA
GCGAAAAGCGCTCAAGCGAAAAAAGACGCGAATCGAAGAGAAGCTGGAGC
AAGCGAAAGAGAAGGTGACTCTCGTGCACACCAACAGCAGCAGTCACACA
AAGAGCTTGGTGCGGTTCTCGGCGTGGAGCGCTTGGTGGCGCAGCTCCTG
CGATATTTGGCGTGTTTTTTTTGGCACGAATACATTGGAATGAGGCGTGT
TCACGTTGTTTTTGTTTGCCCATCACGCTGCGACATTAGTTGACCACAAT
TGGCACCTTTTGCTTGTGATTTGTTTTCAACGCTCACCGTGCAGCCCTCC
CATTGGAGGAGGATCTGTGCTTCGCTGCCTCACGCGTGTGCCCCGCCACT
GACTTACCGGTACATCATCTTGTAAAGGGCAACTGTCCCCTATGAATTGC
TCTTCAAGTATTGACGAGAGCCCCGGAGTCTGAGCAGCACAACGGGGCCT
ACCTACCTCTACGGACAGAGTGGAAAGTTCCTCCAAGGCAATTAGTCGGA
CGTCTGAACAATTAGTTCGGGACGTTCGAGGATGCTGCGTAGGTCGTGTT
AAAATGTTTTTTGCCGCCTCGCCCTGCAATCTGGTGGGCTCCTCTCGCCT
ATCATACCGTATATTGTTGTCGGCCGAAGCATCAAACCCTCGCTCCGACG
TAGGCAACAATCGCTCACACC
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Coding sequence (CDS) from alignment at P-littoralis_Contig125:363193..366563-

>mRNA_P-littoralis_Contig125.98.4 ID=mRNA_P-littoralis_Contig125.98.4|Name=mRNA_P-littoralis_Contig125.98.4|organism=Pylaiella littoralis U1_48|type=CDS|length=501bp|location=Sequence derived from alignment at P-littoralis_Contig125:363193..366563- (Pylaiella littoralis U1_48)
ATGGCCCAAGGAAGCTTCAAGAAGAGCGGGGGGGCCCCCAAGATGAAGGG
AAAAGCGGGCAGGGGTAACGTGGCTGCGAAATCGAGGAGATTGGTCAACA
AGGGCAAAACAGCCGTGAAGAAGGGCTCGTGGAATATGCCGCCAAAACAT
GCGAAAGCGCTGGCGGCTGCCAAGGAAGACATGGCAACAACAAAGATGAT
CAACAGCACGAATGAGCAGCAGGCGGCGGCAAAGTGCTTCCAAAACCAGG
AGAAACTGTTCCTCAAGGAAGTAAAGGAAAGCGGCCGGGAGTTGGCGCGC
GACATCAAGCGAAAAGCGCTCAAGCGAAAAAAGACGCGAATCGAAGAGAA
GCTGGAGCAAGCGAAAGAGAAGGTGACTCTCGTGCACACCAACAGCAGCA
GTCACACAAAGAGCTTGGTGCGGTTCTCGGCGTGGAGCGCTTGGTGGCGC
AGCTCCTGCGATATTTGGCGTGTTTTTTTTGGCACGAATACATTGGAATG
A
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