prot_P-littoralis_Contig1249.1.12 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-littoralis_Contig1249.1.12
Unique Name	prot_P-littoralis_Contig1249.1.12
Type	polypeptide
Organism	Pylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length	518

Homology

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BLAST of mRNA_P-littoralis_Contig1249.1.12 vs. uniprot
Match: D7G6S0_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6S0_ECTSI)

HSP 1 Score: 598 bits (1542), Expect = 1.120e-209
Identity = 372/475 (78.32%), Postives = 389/475 (81.89%), Query Frame = 0

Query:   44 MPQQYGQQXXXXXXGYGGPPPSPVVAGSWGDRAGYVDEGYMRQDPTIIPAGAGTPIASTNSASGDAGFMVSAGGASAMGAPLHSFYPPSLYGVPASVYPYQQPGAFXXXXXXXXXXXXXXXXXXXXXXXXXXXNFY-GQGGYARSTNPGQPIQTTTNLQAGPDGCNLFVFHIPNTMTNDALFRLFSKFGNVISARIMVEKATGRSRGFGFVSYDNRDSAEKAISQMNGYQIEHKRLKVQHKKDKERERYVTSPSPRMMGPGVAAGRMQQTPHFRQPLLPAHGSVLRHHQGGDDKLPPPSPAADTTGGSGVAPGFTVSGEEDHR----------QGDTSTTEVGIDPGSSRANTGG-DKFGARPNDHPHLAYFHRGRDTATDESGGYPSAGG-VDGKVAVGDEKPPQDQDSGYRGRDDSAYLAT-SSGVGGRAASPDPKGVSRARSSSPSVAAVSVSGAALPHQSLEHAMQTKLTI 504
            MPQQYGQQXXXX  GYGGPPPSPVVAGSWG+R GYV+EGYMRQDP I+ AGAGTPIAST S +G+  FMVS GGA+AMGAP+ SFYPPSLYGVP SVYPYQQPGAFXXXXXXXXXXXXXXXXXXXXXX     NFY GQGGYARSTNPGQPIQTTTNLQ GPDGCNLFVFHIPNTMTN+ALFRLFSKFGNVISARIMVEKATGRSRGFGFVSYDNRDSAEKAISQMNGYQIEHKRLKVQHKKDKERERYVT+PSPRMMGPGVAAGRMQQT HFRQPLLP H + LRHHQG                   VAPGFT                  QGD S TEVGID G   A+TGG DK+GAR NDHPHLAY +RGR TA DE+GGYPSAGG VDGK A GDEKP QDQDSGY GRDDSAY+A  +S VGG AASPDPKGVSRARSSSPS AA     AALPHQSLEHAMQTKLT+
Sbjct:    1 MPQQYGQQXXXXADGYGGPPPSPVVAGSWGERTGYVEEGYMRQDPNIV-AGAGTPIASTTSGNGEGTFMVSTGGANAMGAPMQSFYPPSLYGVPTSVYPYQQPGAFXXXXXXXXXXXXXXXXXXXXXXAGG--NFYAGQGGYARSTNPGQPIQTTTNLQ-GPDGCNLFVFHIPNTMTNEALFRLFSKFGNVISARIMVEKATGRSRGFGFVSYDNRDSAEKAISQMNGYQIEHKRLKVQHKKDKERERYVTAPSPRMMGPGVAAGRMQQTTHFRQPLLPGHNAGLRHHQGXXXXXXXXXXXXXXXXXX-VAPGFTXXXXXXXXXXXXXXXXXXQGDASATEVGIDSGPRGASTGGGDKYGARSNDHPHLAYIYRGRGTA-DETGGYPSAGGGVDGKAA-GDEKP-QDQDSGYHGRDDSAYMAAPASSVGGSAASPDPKGVSRARSSSPSAAA----NAALPHQSLEHAMQTKLTM 463

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BLAST of mRNA_P-littoralis_Contig1249.1.12 vs. uniprot
Match: A0A6H5L5J0_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5J0_9PHAE)

HSP 1 Score: 432 bits (1111), Expect = 1.790e-146
Identity = 249/330 (75.45%), Postives = 261/330 (79.09%), Query Frame = 0

Query:  202 AGPDGCNLFVFHIPNTMTNDALFRLFSKFGNVISARIMVEKATGRSRGFGFVSYDNRDSAEKAISQMNGYQIEHKRLKVQHKKDKERERYVTSPSPRMMGPGVAAGRMQQTPHFRQPLLPAHGSVLRHHQGGDDKLPPPSPAADTTGGSGVAPGFTVSGEEDHR-----------QGDTSTTEVGIDPGSSRANTGG-DKFGARPNDHPHLAYFHRGRDTATDESGGYPSAGG-VDGKVAVGDEKPPQDQDSGYRGRDDSAYLAT-SSGVGGRAASPDPKGVSRARSSSPSVAAVSVSGAALPHQSLEHAMQTKLTIGGSGNPPSAAQPS 517
            AGPDGCNLFVFHIPNTMTN+ALFRLFSKFGNVISARIMVEKATGRSRGFGFVSYDNRDSAEKAISQMNGYQIEHKRLKVQHKKDKERERYVT+PSPRMMGPGVAAGRMQQT HFRQPLLPAH + LRHHQG                   VAPGFT                   QGD S T+VGID G   A+TGG DK+GA  NDHPHLAY +RGR TA DE+GGYPSAGG VDGK A GDEKP QDQDSGY GRDDSAY+A  +S VGG AASPDPKGVSRARSSSP  AA     AALPHQSLEHAMQTKLTIGG+G+PPSAAQPS
Sbjct:   11 AGPDGCNLFVFHIPNTMTNEALFRLFSKFGNVISARIMVEKATGRSRGFGFVSYDNRDSAEKAISQMNGYQIEHKRLKVQHKKDKERERYVTAPSPRMMGPGVAAGRMQQTAHFRQPLLPAHNAGLRHHQGXXXXXXXXXXXXXXXXXX-VAPGFTXXXXXXXXXXXXXXXXXXXQGDASATDVGIDAGPRGASTGGGDKYGAHSNDHPHLAYIYRGRGTAADETGGYPSAGGGVDGKAA-GDEKP-QDQDSGYHGRDDSAYMAAPTSSVGGSAASPDPKGVSRARSSSPGAAA----NAALPHQSLEHAMQTKLTIGGNGSPPSAAQPS 333

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BLAST of mRNA_P-littoralis_Contig1249.1.12 vs. uniprot
Match: A0A6H5L539_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L539_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 1.070e-41
Identity = 83/106 (78.30%), Postives = 89/106 (83.96%), Query Frame = 0

Query:   44 MPQQYGQQXXXXXXGYGGPPPSPVVAGSWGDRAGYVDEGYMRQDPTIIPAGAGTPIASTNSASGDAGFMVSAGGASAMGAPLHSFYPPSLYGVPASVYPYQQPGAF 149
            MPQ YGQQ      GYGGPPPSPVVAGSWG+R GYV+EGYMRQDP I+ AGAGTPIAST S +G+  FMVS GGA+AMGAPL SFYPPSLYGVP SVYPYQQPGAF
Sbjct:    1 MPQ-YGQQQQQAD-GYGGPPPSPVVAGSWGERTGYVEEGYMRQDPNIV-AGAGTPIASTTSGNGEGTFMVSTGGANAMGAPLQSFYPPSLYGVPPSVYPYQQPGAF 103

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BLAST of mRNA_P-littoralis_Contig1249.1.12 vs. uniprot
Match: A0A7S2V9D2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V9D2_9STRA)

HSP 1 Score: 144 bits (364), Expect = 1.230e-37
Identity = 73/97 (75.26%), Postives = 81/97 (83.51%), Query Frame = 0

Query:  190 PGQPIQTTTNLQAGPDGCNLFVFHIPNTMTNDALFRLFSKFGNVISARIMVEKATGRSRGFGFVSYDNRDSAEKAISQMNGYQIEHKRLKVQHKKDK 286
            PG PIQTT  L  GP+GCNLFVFHIPN+MTN  L+ LF +FGNV+SARIMVEK TGRSRGFGF+SYDN  SA+ AI  MNG+QI HKRLKVQHKKDK
Sbjct:   41 PGAPIQTTP-LGQGPEGCNLFVFHIPNSMTNVDLYHLFLRFGNVVSARIMVEKHTGRSRGFGFISYDNAVSAKDAIKGMNGFQIGHKRLKVQHKKDK 136

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BLAST of mRNA_P-littoralis_Contig1249.1.12 vs. uniprot
Match: A0A8K1CK88_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CK88_PYTOL)

HSP 1 Score: 142 bits (359), Expect = 1.380e-35
Identity = 75/105 (71.43%), Postives = 83/105 (79.05%), Query Frame = 0

Query:  183 GYA-RSTNPGQPIQTTTNLQAGPDGCNLFVFHIPNTMTNDALFRLFSKFGNVISARIMVEKATGRSRGFGFVSYDNRDSAEKAISQMNGYQIEHKRLKVQHKKDK 286
            GYA +   PG PIQTT + Q GP GCNLFVFHIPN MTN  LF  F+ +GNVISARIMVEK TGRSRGFGFVSYDN  SAE+AI  MNG+Q+  KRLKVQHKK+K
Sbjct:  113 GYAPQVAGPGPPIQTTESGQ-GPPGCNLFVFHIPNDMTNQDLFNYFAPYGNVISARIMVEKETGRSRGFGFVSYDNAASAEQAIKAMNGFQVGRKRLKVQHKKEK 216

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BLAST of mRNA_P-littoralis_Contig1249.1.12 vs. uniprot
Match: K3WGX7_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WGX7_GLOUD)

HSP 1 Score: 142 bits (358), Expect = 1.920e-35
Identity = 75/105 (71.43%), Postives = 83/105 (79.05%), Query Frame = 0

Query:  183 GYA-RSTNPGQPIQTTTNLQAGPDGCNLFVFHIPNTMTNDALFRLFSKFGNVISARIMVEKATGRSRGFGFVSYDNRDSAEKAISQMNGYQIEHKRLKVQHKKDK 286
            GYA +   PG PIQTT + Q GP GCNLFVFHIPN MTN  LF  F+ FGNVISARIMVEK TGRSRGFGFVSYDN  SA+ AI+ MNG+Q+  KRLKVQHKK+K
Sbjct:  121 GYAPQVAGPGPPIQTTESGQ-GPPGCNLFVFHIPNDMTNQDLFNYFATFGNVISARIMVEKETGRSRGFGFVSYDNAPSADAAIAGMNGFQVGRKRLKVQHKKEK 224

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BLAST of mRNA_P-littoralis_Contig1249.1.12 vs. uniprot
Match: D0NCQ3_PHYIT (CUG-BP-and ETR-3-like factor, putative n=5 Tax=Phytophthora TaxID=4783 RepID=D0NCQ3_PHYIT)

HSP 1 Score: 142 bits (357), Expect = 3.750e-35
Identity = 73/97 (75.26%), Postives = 78/97 (80.41%), Query Frame = 0

Query:  190 PGQPIQTTTNLQAGPDGCNLFVFHIPNTMTNDALFRLFSKFGNVISARIMVEKATGRSRGFGFVSYDNRDSAEKAISQMNGYQIEHKRLKVQHKKDK 286
            PG PIQTT + Q GP GCNLFVFHIPN MTN  LF  F+ FGNVISARIMVEK TGRSRGFGFVSYDN  SAE AI  MNG+Q+  KRLKVQHKK+K
Sbjct:  133 PGPPIQTTESGQ-GPPGCNLFVFHIPNDMTNQDLFNYFATFGNVISARIMVEKETGRSRGFGFVSYDNAPSAEAAIKGMNGFQVGRKRLKVQHKKEK 228

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BLAST of mRNA_P-littoralis_Contig1249.1.12 vs. uniprot
Match: A0A024URK9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024URK9_9STRA)

HSP 1 Score: 142 bits (358), Expect = 3.870e-35
Identity = 73/97 (75.26%), Postives = 77/97 (79.38%), Query Frame = 0

Query:  190 PGQPIQTTTNLQAGPDGCNLFVFHIPNTMTNDALFRLFSKFGNVISARIMVEKATGRSRGFGFVSYDNRDSAEKAISQMNGYQIEHKRLKVQHKKDK 286
            PG PIQTT + Q GP GCNLFVFHIPN MTN  LF  F  FGNVISARIMVEK TGRSRGFGFVSYDN  SA+ AI  MNGYQ+  KRLKVQHKK+K
Sbjct:  159 PGPPIQTTESGQ-GPPGCNLFVFHIPNDMTNQDLFNYFQSFGNVISARIMVEKETGRSRGFGFVSYDNAPSADAAIKGMNGYQVGRKRLKVQHKKEK 254

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BLAST of mRNA_P-littoralis_Contig1249.1.12 vs. uniprot
Match: G4ZPR3_PHYSP (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=G4ZPR3_PHYSP)

HSP 1 Score: 142 bits (357), Expect = 4.150e-35
Identity = 73/97 (75.26%), Postives = 78/97 (80.41%), Query Frame = 0

Query:  190 PGQPIQTTTNLQAGPDGCNLFVFHIPNTMTNDALFRLFSKFGNVISARIMVEKATGRSRGFGFVSYDNRDSAEKAISQMNGYQIEHKRLKVQHKKDK 286
            PG PIQTT + Q GP GCNLFVFHIPN MTN  LF  F+ FGNVISARIMVEK TGRSRGFGFVSYDN  SAE AI  MNG+Q+  KRLKVQHKK+K
Sbjct:  135 PGPPIQTTESGQ-GPPGCNLFVFHIPNDMTNQDLFNYFATFGNVISARIMVEKETGRSRGFGFVSYDNAPSAEAAIKGMNGFQVGRKRLKVQHKKEK 230

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BLAST of mRNA_P-littoralis_Contig1249.1.12 vs. uniprot
Match: H3GBP4_PHYRM (Uncharacterized protein n=12 Tax=Phytophthora TaxID=4783 RepID=H3GBP4_PHYRM)

HSP 1 Score: 142 bits (357), Expect = 4.970e-35
Identity = 73/97 (75.26%), Postives = 78/97 (80.41%), Query Frame = 0

Query:  190 PGQPIQTTTNLQAGPDGCNLFVFHIPNTMTNDALFRLFSKFGNVISARIMVEKATGRSRGFGFVSYDNRDSAEKAISQMNGYQIEHKRLKVQHKKDK 286
            PG PIQTT + Q GP GCNLFVFHIPN MTN  LF  F+ FGNVISARIMVEK TGRSRGFGFVSYDN  SAE AI  MNG+Q+  KRLKVQHKK+K
Sbjct:  142 PGPPIQTTESGQ-GPPGCNLFVFHIPNDMTNQDLFNYFATFGNVISARIMVEKETGRSRGFGFVSYDNAPSAEAAIKGMNGFQVGRKRLKVQHKKEK 237

The following BLAST results are available for this feature:

BLAST of mRNA_P-littoralis_Contig1249.1.12 vs. uniprot

BLAST of mRNA_P-littoralis_Contig1249.1.12 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G6S0_ECTSI	1.120e-209	78.32	RRM domain-containing protein n=1 Tax=Ectocarpus s...	[more]
A0A6H5L5J0_9PHAE	1.790e-146	75.45	RRM domain-containing protein n=1 Tax=Ectocarpus s...	[more]
A0A6H5L539_9PHAE	1.070e-41	78.30	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A7S2V9D2_9STRA	1.230e-37	75.26	Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa...	[more]
A0A8K1CK88_PYTOL	1.380e-35	71.43	Uncharacterized protein n=1 Tax=Pythium oligandrum...	[more]
K3WGX7_GLOUD	1.920e-35	71.43	Uncharacterized protein n=1 Tax=Globisporangium ul...	[more]
D0NCQ3_PHYIT	3.750e-35	75.26	CUG-BP-and ETR-3-like factor, putative n=5 Tax=Phy...	[more]
A0A024URK9_9STRA	3.870e-35	75.26	Uncharacterized protein n=1 Tax=Aphanomyces invada...	[more]
G4ZPR3_PHYSP	4.150e-35	75.26	Uncharacterized protein n=3 Tax=Phytophthora TaxID...	[more]
H3GBP4_PHYRM	4.970e-35	75.26	Uncharacterized protein n=12 Tax=Phytophthora TaxI...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 208..281 e-value: 5.9E-28 score: 108.9
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 209..279 e-value: 7.1E-22 score: 77.0
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 207..285 score: 19.297218
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 185..292 e-value: 6.1E-30 score: 105.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 430..444
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 281..478
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 392..411
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 496..517
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 490..517
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..73
None	No IPR available	PANTHER	PTHR48024	GEO13361P1-RELATED	coord: 118..454
None	No IPR available	PANTHER	PTHR48024:SF29	GEO13361P1	coord: 118..454
None	No IPR available	CDD	cd12362	RRM3_CELF1-6	coord: 209..281 e-value: 5.26455E-39 score: 134.687
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 198..307

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-littoralis_Contig1249	contig	P-littoralis_Contig1249:5676..16062 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Pylaiella littoralis U1_48 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-littoralis_Contig1249.1.12	mRNA_P-littoralis_Contig1249.1.12	Pylaiella littoralis U1_48	mRNA	P-littoralis_Contig1249 5172..26616 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-littoralis_Contig1249.1.12 ID=prot_P-littoralis_Contig1249.1.12|Name=mRNA_P-littoralis_Contig1249.1.12|organism=Pylaiella littoralis U1_48|type=polypeptide|length=518bp
MSYQQHQGAPDANRRQQQQAPPFPILGTTGAAAGRAPAAGVYGMPQQYGQ
QQQQQAEGYGGPPPSPVVAGSWGDRAGYVDEGYMRQDPTIIPAGAGTPIA
STNSASGDAGFMVSAGGASAMGAPLHSFYPPSLYGVPASVYPYQQPGAFP
GPYGGGGGGAGGGAAGTAAAAGSTAGNFYGQGGYARSTNPGQPIQTTTNL
QAGPDGCNLFVFHIPNTMTNDALFRLFSKFGNVISARIMVEKATGRSRGF
GFVSYDNRDSAEKAISQMNGYQIEHKRLKVQHKKDKERERYVTSPSPRMM
GPGVAAGRMQQTPHFRQPLLPAHGSVLRHHQGGDDKLPPPSPAADTTGGS
GVAPGFTVSGEEDHRQGDTSTTEVGIDPGSSRANTGGDKFGARPNDHPHL
AYFHRGRDTATDESGGYPSAGGVDGKVAVGDEKPPQDQDSGYRGRDDSAY
LATSSGVGGRAASPDPKGVSRARSSSPSVAAVSVSGAALPHQSLEHAMQT
KLTIGGSGNPPSAAQPS*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf