mRNA_P-littoralis_Contig1.335.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1.335.1
Unique NamemRNA_P-littoralis_Contig1.335.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1.335.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1contigP-littoralis_Contig1:1505852..1506776 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size925
Hectar predicted targeting categoryother localisation
Exons1
Cds size837
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789309.1860151-UTR-P-littoralis_Contig1:1505851..15059391680789309.1860151-UTR-P-littoralis_Contig1:1505851..1505939Pylaiella littoralis U1_48UTRP-littoralis_Contig1 1505852..1505939 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789309.198386-CDS-P-littoralis_Contig1:1505939..15067761680789309.198386-CDS-P-littoralis_Contig1:1505939..1506776Pylaiella littoralis U1_48CDSP-littoralis_Contig1 1505940..1506776 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1.335.1prot_P-littoralis_Contig1.335.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1 1505940..1506776 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1.335.1

>prot_P-littoralis_Contig1.335.1 ID=prot_P-littoralis_Contig1.335.1|Name=mRNA_P-littoralis_Contig1.335.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=279bp
MAKREDQGKNLLRLLQAAQPSPAPPNAPVHRPHHSETDNSDYPPSGPLPA
MGVRSAAAGEQYYQDAAAPAAADASETAGDLYFYTLPRPGASANTPTRSA
RADLLGILQQSPHLTESATALFRHRQPQQQHTPHHPQLQQHQSQQMHSAS
RPPPSTTRSDSIAAEQERYLKKFLAIGGDTGDNNTSLPISPPRQRQQQET
RSALVPVTPPPSVPPVAAASAAGVTENNNVSPRAHKGRHSTNNQGRGRGG
GGREGRGRGARTPQHATGGREARRARGRG
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mRNA from alignment at P-littoralis_Contig1:1505852..1506776+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1.335.1 ID=mRNA_P-littoralis_Contig1.335.1|Name=mRNA_P-littoralis_Contig1.335.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=925bp|location=Sequence derived from alignment at P-littoralis_Contig1:1505852..1506776+ (Pylaiella littoralis U1_48)
GGAGAGCAACAGCGAAAGAGCAGACTACAGGGTACAACGGCACATCACGG
AGAGGAGAGGGGGGAGACTGGAAGAGGTACAATAAACAATGGCAAAGCGA
GAGGACCAAGGAAAGAATCTTCTCAGGTTGCTTCAGGCCGCGCAGCCGTC
GCCCGCCCCGCCTAACGCACCGGTTCATCGTCCTCATCATTCCGAGACAG
ATAACTCGGACTATCCTCCTTCTGGCCCACTGCCCGCAATGGGGGTACGA
AGTGCAGCGGCCGGCGAGCAATACTACCAAGACGCTGCAGCTCCCGCTGC
TGCTGATGCTTCCGAAACTGCTGGTGACCTTTATTTCTACACCCTCCCTC
GCCCTGGGGCCTCCGCAAATACACCCACGCGCTCGGCTCGTGCGGACCTT
CTGGGAATTCTGCAACAATCACCGCACTTGACGGAGTCGGCAACGGCTCT
TTTCCGACATCGACAGCCCCAACAGCAGCACACACCCCACCACCCACAGC
TACAACAACATCAATCACAACAGATGCATTCGGCCTCGCGACCACCGCCG
TCAACCACGCGAAGCGATAGTATCGCGGCTGAACAGGAGCGTTACCTGAA
AAAATTTCTCGCCATCGGCGGCGACACCGGTGACAACAACACCAGCTTGC
CAATTTCTCCTCCGCGCCAACGGCAGCAGCAGGAAACGCGGAGCGCTTTG
GTCCCAGTGACACCGCCACCATCAGTGCCGCCAGTAGCAGCAGCATCAGC
AGCGGGTGTCACTGAGAACAACAACGTGTCGCCACGCGCACATAAGGGCC
GACATTCTACAAACAACCAAGGTCGAGGCCGGGGAGGAGGCGGCAGAGAG
GGGAGAGGGAGAGGAGCTCGAACCCCACAGCACGCGACCGGCGGGCGGGA
GGCTAGGAGAGCAAGGGGGAGGGGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1:1505852..1506776+

>mRNA_P-littoralis_Contig1.335.1 ID=mRNA_P-littoralis_Contig1.335.1|Name=mRNA_P-littoralis_Contig1.335.1|organism=Pylaiella littoralis U1_48|type=CDS|length=837bp|location=Sequence derived from alignment at P-littoralis_Contig1:1505852..1506776+ (Pylaiella littoralis U1_48)
ATGGCAAAGCGAGAGGACCAAGGAAAGAATCTTCTCAGGTTGCTTCAGGC
CGCGCAGCCGTCGCCCGCCCCGCCTAACGCACCGGTTCATCGTCCTCATC
ATTCCGAGACAGATAACTCGGACTATCCTCCTTCTGGCCCACTGCCCGCA
ATGGGGGTACGAAGTGCAGCGGCCGGCGAGCAATACTACCAAGACGCTGC
AGCTCCCGCTGCTGCTGATGCTTCCGAAACTGCTGGTGACCTTTATTTCT
ACACCCTCCCTCGCCCTGGGGCCTCCGCAAATACACCCACGCGCTCGGCT
CGTGCGGACCTTCTGGGAATTCTGCAACAATCACCGCACTTGACGGAGTC
GGCAACGGCTCTTTTCCGACATCGACAGCCCCAACAGCAGCACACACCCC
ACCACCCACAGCTACAACAACATCAATCACAACAGATGCATTCGGCCTCG
CGACCACCGCCGTCAACCACGCGAAGCGATAGTATCGCGGCTGAACAGGA
GCGTTACCTGAAAAAATTTCTCGCCATCGGCGGCGACACCGGTGACAACA
ACACCAGCTTGCCAATTTCTCCTCCGCGCCAACGGCAGCAGCAGGAAACG
CGGAGCGCTTTGGTCCCAGTGACACCGCCACCATCAGTGCCGCCAGTAGC
AGCAGCATCAGCAGCGGGTGTCACTGAGAACAACAACGTGTCGCCACGCG
CACATAAGGGCCGACATTCTACAAACAACCAAGGTCGAGGCCGGGGAGGA
GGCGGCAGAGAGGGGAGAGGGAGAGGAGCTCGAACCCCACAGCACGCGAC
CGGCGGGCGGGAGGCTAGGAGAGCAAGGGGGAGGGGC
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