mRNA_P-littoralis_Contig1248.16.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1248.16.1
Unique NamemRNA_P-littoralis_Contig1248.16.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1248.16.1 vs. uniprot
Match: A0A6C0JA70_9ZZZZ (DUF4338 domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0JA70_9ZZZZ)

HSP 1 Score: 73.9 bits (180), Expect = 9.770e-13
Identity = 36/81 (44.44%), Postives = 54/81 (66.67%), Query Frame = 1
Query:  127 FKEQACRRNIRVSISFDEYSSIVRTACWYCGEFTYKGYSEVDRVQNAGAYEKDNVVPCCKTCNFMKGPLSVNDFLGKVKHI 369
            +K+ + +RNI+ +IS  EY +I+   C YCG F  +G + +DRV +   YE  N+VPCCKTCN +KG L++  F  K+K+I
Sbjct:  365 YKKSSAKRNIKFNISETEYINILTYPCKYCGCFN-QGANGIDRVHSELPYEIGNIVPCCKTCNSLKGTLTLLQFKQKLKNI 444          
BLAST of mRNA_P-littoralis_Contig1248.16.1 vs. uniprot
Match: A0A843A3E2_9ARCH (Uncharacterized protein n=1 Tax=Thermoplasmata archaeon TaxID=1906666 RepID=A0A843A3E2_9ARCH)

HSP 1 Score: 64.3 bits (155), Expect = 1.450e-10
Identity = 35/96 (36.46%), Postives = 51/96 (53.12%), Query Frame = 1
Query:  127 FKEQACRRNIRVSISFDEYSSIVRTACWYCG-----------EFTYKG----YSEVDRVQNAGAYEKDNVVPCCKTCNFMKGPLSVNDFLGKVKHI 369
            +K  A  R    +++ +E+  + ++ C+YCG             + KG    Y+ +DRV N+  YE  N VPCCKTCN MKG L  N+F  K+K I
Sbjct:   26 YKRTARIREYAFTLTKEEFLELTKSDCFYCGTEPKQYKSKYGNKSRKGIPFVYNGIDRVDNSVGYEYANCVPCCKTCNRMKGCLGFNEFTKKIKEI 121          
BLAST of mRNA_P-littoralis_Contig1248.16.1 vs. uniprot
Match: A0A6C0ITL0_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0ITL0_9ZZZZ)

HSP 1 Score: 65.1 bits (157), Expect = 1.160e-9
Identity = 33/86 (38.37%), Postives = 50/86 (58.14%), Query Frame = 1
Query:  115 RWRVFKEQACRRNIRVSISFDEYSSIVRTACWYCGEFTYKGY-SEVDRVQNAGAYEKDNVVPCCKTCNFMKGPLSVNDFLGKVKHI 369
            R++ ++  A ++ I   +S DE  ++   +C+YC      G+ + +DR  +   Y KDNVV CCK CN++KG L  NDFL  V HI
Sbjct:  274 RFKYYERCAIQKGINFDLSKDECCNLFDKSCYYCKHKDDNGFLNGIDRKSSYLGYIKDNVVTCCKMCNYIKGSLGHNDFLQIVDHI 359          
BLAST of mRNA_P-littoralis_Contig1248.16.1 vs. uniprot
Match: L8GNC2_ACACA (Uncharacterized protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GNC2_ACACA)

HSP 1 Score: 60.5 bits (145), Expect = 2.350e-9
Identity = 28/81 (34.57%), Postives = 45/81 (55.56%), Query Frame = 1
Query:  127 FKEQACRRNIRVSISFDEYSSIVRTACWYCGEFTYKGYSEVDRVQNAGAYEKDNVVPCCKTCNFMKGPLSVNDFLGKVKHI 369
            + ++A +RN+   +    +  ++ + C+ CG  +  G   VDR  N   Y  +N +PCCKTCNF+KG L + D L +V  I
Sbjct:   19 YMKKAAKRNLVFELERSHFDELLGSPCYLCGVRSAGG---VDRTDNTVGYTVENAMPCCKTCNFLKGTLPLCDVLTRVDEI 96          
BLAST of mRNA_P-littoralis_Contig1248.16.1 vs. uniprot
Match: A0A0F9UB66_9ZZZZ (Uncharacterized protein n=1 Tax=marine sediment metagenome TaxID=412755 RepID=A0A0F9UB66_9ZZZZ)

HSP 1 Score: 59.7 bits (143), Expect = 2.360e-8
Identity = 32/96 (33.33%), Postives = 46/96 (47.92%), Query Frame = 1
Query:  127 FKEQACRRNIRVSISFDEYSSIVRTACWYCG--------------EFTYKGYSEVDRVQNAGAYEKDNVVPCCKTCNFMKGPLSVNDFLGKVKHIA 372
            ++ QA  R +  S+S   +  +V  +C YCG              EF Y G   +DRV     Y   N VPCCKTCN+ KG +++ +F   +  IA
Sbjct:   89 YRHQAKTRGLGFSLSKKHFRELVTNSCHYCGIPPSNSVKKKGSNGEFVYSG---IDRVATKYGYSVKNCVPCCKTCNWAKGTMNLEEFKSWITRIA 181          
BLAST of mRNA_P-littoralis_Contig1248.16.1 vs. uniprot
Match: A0A0F9F6T2_9ZZZZ (Uncharacterized protein n=1 Tax=marine sediment metagenome TaxID=412755 RepID=A0A0F9F6T2_9ZZZZ)

HSP 1 Score: 58.2 bits (139), Expect = 2.460e-7
Identity = 28/89 (31.46%), Postives = 44/89 (49.44%), Query Frame = 1
Query:  145 RRNIRVSISFDEYSSIVRTACWYCG--------------EFTYKGYSEVDRVQNAGAYEKDNVVPCCKTCNFMKGPLSVNDFLGKVKHI 369
            +R I  ++SFD +  +    C+YCG              ++   G   +DRV N   Y +DNVVPCCK CN+ K  +S++ F   +  +
Sbjct:  207 KRKINFTLSFDTFVELTSQHCFYCGTKPSNITVNEAGNGDYVSNG---IDRVDNNKGYIEDNVVPCCKVCNYAKNTMSLDQFYSWISRV 292          
BLAST of mRNA_P-littoralis_Contig1248.16.1 vs. uniprot
Match: A0A3C2CGI7_9BACT (Uncharacterized protein n=1 Tax=Candidatus Nomurabacteria bacterium TaxID=2052152 RepID=A0A3C2CGI7_9BACT)

HSP 1 Score: 55.1 bits (131), Expect = 1.320e-6
Identity = 25/88 (28.41%), Postives = 48/88 (54.55%), Query Frame = 1
Query:  118 WRVFKEQACRRNIRVSISFDEYSSIVRTACWYCGEFTYKGYSE-----------VDRVQNAGAYEKDNVVPCCKTCNFMKGPLSVNDF 348
            ++ + + A  R +   ++ +E+ S++  +C+YC E   + + E           +DR+ ++  Y  +NVVPCCK CN+ K  +SV +F
Sbjct:   83 FKTYADSAKNRCLSFELTKEEFVSLISKSCFYCNEPPSERWHEARGNGHMLSNGLDRIDSSKGYTTNNVVPCCKKCNYAKKQMSVEEF 170          
BLAST of mRNA_P-littoralis_Contig1248.16.1 vs. uniprot
Match: A0A6H5JE23_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE23_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 2.640e-6
Identity = 26/35 (74.29%), Postives = 27/35 (77.14%), Query Frame = -2
Query:  279 CCFLAMCLTFPKKSLTESGPFIKLQVLQQGTTLSF 383
            CC LAM LTFPK   TE  PFIKLQVLQ+ TTLSF
Sbjct:   69 CCSLAMSLTFPKNFFTERDPFIKLQVLQEATTLSF 103          
BLAST of mRNA_P-littoralis_Contig1248.16.1 vs. uniprot
Match: A0A0F9SS21_9ZZZZ (Uncharacterized protein n=1 Tax=marine sediment metagenome TaxID=412755 RepID=A0A0F9SS21_9ZZZZ)

HSP 1 Score: 51.6 bits (122), Expect = 8.030e-6
Identity = 25/82 (30.49%), Postives = 40/82 (48.78%), Query Frame = 1
Query:  178 EYSSIVRTACWYCG--------------EFTYKGYSEVDRVQNAGAYEKDNVVPCCKTCNFMKGPLSVNDFLGKVKHIARKQ 381
            ++ S+ +  C+YCG              ++ Y G   VDR+ N   Y   NV+PCCKTCN++K   S+ +F   +  +   Q
Sbjct:   34 DFKSLTQMQCYYCGIEPSQIYHNKELNGDYLYNG---VDRIDNNLGYIYGNVLPCCKTCNYVKSNQSMREFQAWIDRLVEHQ 112          
BLAST of mRNA_P-littoralis_Contig1248.16.1 vs. uniprot
Match: A0A7C1KMV7_9BACT (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A7C1KMV7_9BACT)

HSP 1 Score: 52.8 bits (125), Expect = 9.180e-6
Identity = 31/102 (30.39%), Postives = 49/102 (48.04%), Query Frame = 1
Query:  127 FKEQACRRNIRVSISFDEYSSIVRTACWYCG------EFTYKG------YSEVDRVQNAGAYEKDNVVPCCKTCNFMKGPLSVNDFLGKVKHIARKQHALMD 396
            +K  A  R  + S+   +  +I+   C+YCG      + T         YS +DR+ +   Y  +NV+PCCK CN+ K  +S+  F  KV  I   Q A+ +
Sbjct:   83 YKRHAINRGYKWSLKRSDVENIINKDCFYCGSSPNNRKITKNSLNNGLLYSGIDRIDSEKDYTDNNVLPCCKICNYAKSNMSIKRF--KVWAIKLGQKAMAE 182          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1248.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6C0JA70_9ZZZZ9.770e-1344.44DUF4338 domain-containing protein n=1 Tax=viral me... [more]
A0A843A3E2_9ARCH1.450e-1036.46Uncharacterized protein n=1 Tax=Thermoplasmata arc... [more]
A0A6C0ITL0_9ZZZZ1.160e-938.37Uncharacterized protein (Fragment) n=1 Tax=viral m... [more]
L8GNC2_ACACA2.350e-934.57Uncharacterized protein n=1 Tax=Acanthamoeba caste... [more]
A0A0F9UB66_9ZZZZ2.360e-833.33Uncharacterized protein n=1 Tax=marine sediment me... [more]
A0A0F9F6T2_9ZZZZ2.460e-731.46Uncharacterized protein n=1 Tax=marine sediment me... [more]
A0A3C2CGI7_9BACT1.320e-628.41Uncharacterized protein n=1 Tax=Candidatus Nomurab... [more]
A0A6H5JE23_9PHAE2.640e-674.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0F9SS21_9ZZZZ8.030e-630.49Uncharacterized protein n=1 Tax=marine sediment me... [more]
A0A7C1KMV7_9BACT9.180e-630.39Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1248contigP-littoralis_Contig1248:47232..47630 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog10506.Q98540_PBCV1
Model size399
Max annot lvl10239|Viruses
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.95e-08
EggNOG OGs4QC9Q@10239|Viruses,4R0EV@35237|dsDNA viruses no RNA stage
Cds size399
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789545.2219791-CDS-P-littoralis_Contig1248:47231..476301680789545.2219791-CDS-P-littoralis_Contig1248:47231..47630Pylaiella littoralis U1_48CDSP-littoralis_Contig1248 47232..47630 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1248.16.1prot_P-littoralis_Contig1248.16.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1248 47232..47630 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1248.16.1

>prot_P-littoralis_Contig1248.16.1 ID=prot_P-littoralis_Contig1248.16.1|Name=mRNA_P-littoralis_Contig1248.16.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=133bp
MNAPEYDKRRIRALQNKRYRRSTAYEKYLKARKTDVVYRWRVFKEQACRR
NIRVSISFDEYSSIVRTACWYCGEFTYKGYSEVDRVQNAGAYEKDNVVPC
CKTCNFMKGPLSVNDFLGKVKHIARKQHALMD*
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mRNA from alignment at P-littoralis_Contig1248:47232..47630-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1248.16.1 ID=mRNA_P-littoralis_Contig1248.16.1|Name=mRNA_P-littoralis_Contig1248.16.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=399bp|location=Sequence derived from alignment at P-littoralis_Contig1248:47232..47630- (Pylaiella littoralis U1_48)
ATGAACGCACCAGAGTACGACAAACGACGCATACGAGCCCTGCAAAACAA ACGATACCGAAGGTCCACCGCATATGAGAAGTACTTAAAAGCCAGGAAAA CGGATGTGGTCTACAGGTGGCGCGTGTTCAAGGAGCAGGCCTGTAGGAGA AATATCAGGGTGTCGATTAGCTTTGACGAGTACAGCAGCATCGTACGTAC AGCGTGTTGGTACTGCGGCGAATTTACATACAAGGGGTATTCAGAAGTAG ACCGCGTGCAGAACGCGGGAGCGTACGAAAAAGACAACGTTGTGCCTTGC TGTAAAACTTGCAACTTTATGAAAGGGCCACTTTCGGTTAACGACTTCTT GGGGAAGGTCAAGCACATCGCAAGAAAACAACACGCCTTGATGGACTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1248:47232..47630-

>mRNA_P-littoralis_Contig1248.16.1 ID=mRNA_P-littoralis_Contig1248.16.1|Name=mRNA_P-littoralis_Contig1248.16.1|organism=Pylaiella littoralis U1_48|type=CDS|length=399bp|location=Sequence derived from alignment at P-littoralis_Contig1248:47232..47630- (Pylaiella littoralis U1_48)
ATGAACGCACCAGAGTACGACAAACGACGCATACGAGCCCTGCAAAACAA
ACGATACCGAAGGTCCACCGCATATGAGAAGTACTTAAAAGCCAGGAAAA
CGGATGTGGTCTACAGGTGGCGCGTGTTCAAGGAGCAGGCCTGTAGGAGA
AATATCAGGGTGTCGATTAGCTTTGACGAGTACAGCAGCATCGTACGTAC
AGCGTGTTGGTACTGCGGCGAATTTACATACAAGGGGTATTCAGAAGTAG
ACCGCGTGCAGAACGCGGGAGCGTACGAAAAAGACAACGTTGTGCCTTGC
TGTAAAACTTGCAACTTTATGAAAGGGCCACTTTCGGTTAACGACTTCTT
GGGGAAGGTCAAGCACATCGCAAGAAAACAACACGCCTTGATGGACTAA
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