mRNA_P-littoralis_Contig1245.14.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1245.14.1
Unique NamemRNA_P-littoralis_Contig1245.14.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1245.14.1 vs. uniprot
Match: A0A6H5JNH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNH6_9PHAE)

HSP 1 Score: 199 bits (507), Expect = 7.370e-64
Identity = 96/101 (95.05%), Postives = 99/101 (98.02%), Query Frame = 1 
Query:  127 DVLKEVLFLRQVWRFMLPTAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELLERKEISITHVTSEYQHADFLTKAISRESFDLHRDFVMNLQ 429
            DVLKEVLFLRQVWRFMLP AGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIREL+ERKEISITHVTSE+QHADFLTKAIS+ESF LHRDFVMNLQ
Sbjct:   19 DVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESFALHRDFVMNLQ 119
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BLAST of mRNA_P-littoralis_Contig1245.14.1 vs. uniprot
Match: A0A6H5JTT9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT9_9PHAE)

HSP 1 Score: 186 bits (472), Expect = 7.900e-58
Identity = 90/100 (90.00%), Postives = 93/100 (93.00%), Query Frame = 1 
Query:  127 DVLKEVLFLRQVWRFMLPTAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELLERKEISITHVTSEYQHADFLTKAISRESFDLHRDFVMNL 426
            DVLKEVLFLRQVWRFMLP AGMPCIPVFEDN   IQIAHNPITNSNSKHIDVRHHFIREL+ERKEISITHVTSE+QH D LTKAIS+ESF LHRDFVMNL
Sbjct:   69 DVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNNQRIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHVDSLTKAISKESFALHRDFVMNL 168
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BLAST of mRNA_P-littoralis_Contig1245.14.1 vs. uniprot
Match: A0A6H5KP70_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP70_9PHAE)

HSP 1 Score: 191 bits (485), Expect = 8.130e-58
Identity = 92/101 (91.09%), Postives = 97/101 (96.04%), Query Frame = 1 
Query:  127 DVLKEVLFLRQVWRFMLPTAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELLERKEISITHVTSEYQHADFLTKAISRESFDLHRDFVMNLQ 429
            DVLKEVLFLRQVWRFMLP AGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIREL+ERKEISIT+V + +QHADFLTKAIS+ESF LHRDFVMNLQ
Sbjct:  221 DVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITNVPTPFQHADFLTKAISKESFALHRDFVMNLQ 321
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BLAST of mRNA_P-littoralis_Contig1245.14.1 vs. uniprot
Match: A0A6H5K684_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K684_9PHAE)

HSP 1 Score: 190 bits (483), Expect = 1.670e-57
Identity = 91/98 (92.86%), Postives = 95/98 (96.94%), Query Frame = 1 
Query:  127 DVLKEVLFLRQVWRFMLPTAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELLERKEISITHVTSEYQHADFLTKAISRESFDLHRDFVM 420
            DVLKEVLFLRQVWRFMLP AGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIREL+ERKEISITHVTSE+QHADFLTKA S+ESF LHRDFV+
Sbjct:  211 DVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKATSKESFALHRDFVI 308
[Close]
BLAST of mRNA_P-littoralis_Contig1245.14.1 vs. uniprot
Match: A0A6H5L4G9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G9_9PHAE)

HSP 1 Score: 191 bits (484), Expect = 4.920e-57
Identity = 91/101 (90.10%), Postives = 96/101 (95.05%), Query Frame = 1 
Query:  127 DVLKEVLFLRQVWRFMLPTAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELLERKEISITHVTSEYQHADFLTKAISRESFDLHRDFVMNLQ 429
            DVLKEVLFLRQVWRFMLP A MPCIPVFEDNQGAIQI HNPITNSNSKHIDVRHHFIREL+ERKEISITHV +++QHADFLTKAIS+ESF LHRDFVMNLQ
Sbjct:  276 DVLKEVLFLRQVWRFMLPDASMPCIPVFEDNQGAIQIMHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTQFQHADFLTKAISKESFALHRDFVMNLQ 376
[Close]
BLAST of mRNA_P-littoralis_Contig1245.14.1 vs. uniprot
Match: A0A6H5JEF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF2_9PHAE)

HSP 1 Score: 192 bits (488), Expect = 5.550e-57
Identity = 92/101 (91.09%), Postives = 96/101 (95.05%), Query Frame = 1 
Query:  127 DVLKEVLFLRQVWRFMLPTAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELLERKEISITHVTSEYQHADFLTKAISRESFDLHRDFVMNLQ 429
            DVLKEVLFLRQVWRFMLP AGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIREL+ERKEISITHV + +QHADFLTKAIS+ES  LHRDFVMNLQ
Sbjct:  338 DVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTHFQHADFLTKAISKESLGLHRDFVMNLQ 438
[Close]
BLAST of mRNA_P-littoralis_Contig1245.14.1 vs. uniprot
Match: A0A6H5JHY5_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY5_9PHAE)

HSP 1 Score: 199 bits (507), Expect = 1.430e-56
Identity = 96/101 (95.05%), Postives = 99/101 (98.02%), Query Frame = 1 
Query:  127 DVLKEVLFLRQVWRFMLPTAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELLERKEISITHVTSEYQHADFLTKAISRESFDLHRDFVMNLQ 429
            DVLKEVLFLRQVWRFMLP AGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIREL+ERKEISITHVTSE+QHADFLTKAIS+ESF LHRDFVMNLQ
Sbjct: 1372 DVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESFALHRDFVMNLQ 1472
[Close]
BLAST of mRNA_P-littoralis_Contig1245.14.1 vs. uniprot
Match: A0A6H5L3H4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3H4_9PHAE)

HSP 1 Score: 189 bits (479), Expect = 6.210e-56
Identity = 90/97 (92.78%), Postives = 93/97 (95.88%), Query Frame = 1 
Query:  127 DVLKEVLFLRQVWRFMLPTAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELLERKEISITHVTSEYQHADFLTKAISRESFDLHRDFV 417
            DVLKEVLFLRQVWRFMLP  GMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIREL+ERKEISITHVTSE+QHADFLTKAIS+ESF LHRDF 
Sbjct:  313 DVLKEVLFLRQVWRFMLPDTGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESFALHRDFA 409
[Close]
BLAST of mRNA_P-littoralis_Contig1245.14.1 vs. uniprot
Match: A0A6H5K9U4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9U4_9PHAE)

HSP 1 Score: 195 bits (495), Expect = 1.250e-55
Identity = 94/101 (93.07%), Postives = 97/101 (96.04%), Query Frame = 1 
Query:  127 DVLKEVLFLRQVWRFMLPTAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELLERKEISITHVTSEYQHADFLTKAISRESFDLHRDFVMNLQ 429
            DVLKEVLFLRQVWRFM P A MPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIREL+ERKEISITHVTSE+QHADFLTKAIS+ESF LHRDFVMNLQ
Sbjct:  679 DVLKEVLFLRQVWRFMWPDASMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESFALHRDFVMNLQ 779
[Close]
BLAST of mRNA_P-littoralis_Contig1245.14.1 vs. uniprot
Match: A0A6H5KQN5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQN5_9PHAE)

HSP 1 Score: 195 bits (495), Expect = 1.890e-55
Identity = 93/101 (92.08%), Postives = 99/101 (98.02%), Query Frame = 1 
Query:  127 DVLKEVLFLRQVWRFMLPTAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELLERKEISITHVTSEYQHADFLTKAISRESFDLHRDFVMNLQ 429
            DVLKEVLFLRQVWRFMLP AGMPCIPVFEDNQGAIQIA+NPITNSNSKHIDVRHHFIREL+ERKEISITHVTSE+QHADFLTKAIS+ESF LHRDFVMN++
Sbjct:  728 DVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAYNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESFALHRDFVMNMR 828
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1245.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JNH6_9PHAE7.370e-6495.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTT9_9PHAE7.900e-5890.00Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP70_9PHAE8.130e-5891.09Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K684_9PHAE1.670e-5792.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4G9_9PHAE4.920e-5790.10Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JEF2_9PHAE5.550e-5791.09Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JHY5_9PHAE1.430e-5695.05Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5L3H4_9PHAE6.210e-5692.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9U4_9PHAE1.250e-5593.07Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KQN5_9PHAE1.890e-5592.08Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1245contigP-littoralis_Contig1245:40417..40848 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog7070.TC002223-PA
PFAMsDUF4219,MBD,RVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size432
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.85e-15
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3BI7U@33208|Metazoa,3CTS1@33213|Bilateria,41WYJ@6656|Arthropoda,3SH01@50557|Insecta
DescriptionEncoded by
Cds size261
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789544.4761002-CDS-P-littoralis_Contig1245:40416..406771680789544.4761002-CDS-P-littoralis_Contig1245:40416..40677Pylaiella littoralis U1_48CDSP-littoralis_Contig1245 40417..40677 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789544.4870257-UTR-P-littoralis_Contig1245:40677..408481680789544.4870257-UTR-P-littoralis_Contig1245:40677..40848Pylaiella littoralis U1_48UTRP-littoralis_Contig1245 40678..40848 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1245.14.1prot_P-littoralis_Contig1245.14.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1245 40417..40677 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1245.14.1

>prot_P-littoralis_Contig1245.14.1 ID=prot_P-littoralis_Contig1245.14.1|Name=mRNA_P-littoralis_Contig1245.14.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=87bp
MLPTAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELLERKE
ISITHVTSEYQHADFLTKAISRESFDLHRDFVMNLQ*
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mRNA from alignment at P-littoralis_Contig1245:40417..40848-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1245.14.1 ID=mRNA_P-littoralis_Contig1245.14.1|Name=mRNA_P-littoralis_Contig1245.14.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=432bp|location=Sequence derived from alignment at P-littoralis_Contig1245:40417..40848- (Pylaiella littoralis U1_48)
CCCGATGTTTTTGCGTTGGATTCTGTTCTTCTCATACTTCAGTACAATAT
TAGTCGGTAAACAACTGGTCGGAAAACTGATGGTCGGTGAGTTTTCTAGA
AGTAGTGCCGTTTGTATTTTTCGATTGATGTCTTGAAGGAAGTGTTGTTT
TTGAGGCAGGTTTGGCGTTTTATGTTGCCAACAGCTGGCATGCCTTGCAT
CCCAGTGTTCGAGGACAACCAGGGTGCGATTCAGATCGCCCACAATCCAA
TCACCAACTCGAACTCGAAGCACATAGACGTACGGCATCACTTTATCAGG
GAACTGTTAGAGAGGAAGGAGATTTCGATCACACACGTGACGTCGGAATA
TCAGCATGCAGATTTCTTGACGAAAGCAATCAGCAGGGAGTCTTTTGACC
TGCACCGTGATTTTGTGATGAATTTGCAGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1245:40417..40848-

>mRNA_P-littoralis_Contig1245.14.1 ID=mRNA_P-littoralis_Contig1245.14.1|Name=mRNA_P-littoralis_Contig1245.14.1|organism=Pylaiella littoralis U1_48|type=CDS|length=261bp|location=Sequence derived from alignment at P-littoralis_Contig1245:40417..40848- (Pylaiella littoralis U1_48)
ATGTTGCCAACAGCTGGCATGCCTTGCATCCCAGTGTTCGAGGACAACCA
GGGTGCGATTCAGATCGCCCACAATCCAATCACCAACTCGAACTCGAAGC
ACATAGACGTACGGCATCACTTTATCAGGGAACTGTTAGAGAGGAAGGAG
ATTTCGATCACACACGTGACGTCGGAATATCAGCATGCAGATTTCTTGAC
GAAAGCAATCAGCAGGGAGTCTTTTGACCTGCACCGTGATTTTGTGATGA
ATTTGCAGTGA
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