mRNA_P-littoralis_Contig1245.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1245.3.1
Unique NamemRNA_P-littoralis_Contig1245.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1245.3.1 vs. uniprot
Match: D8LMX9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMX9_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 2.460e-21
Identity = 47/85 (55.29%), Postives = 58/85 (68.24%), Query Frame = 1 
Query:    1 MSKPATRINVLSTTGLVVIEGGYGLRDKIKQEGGRFQPSAVGDIVAAKSWVIKTLNDSDARTLAKFLKKSARSAGLEAQVCPTFY 255
            M   AT INVL+TTG+V IE GY +   IK+ GG F+P  VGD+V  KSW++K   D  ART+AK LKKSARS+GL AQ    F+
Sbjct:    1 MESRATIINVLNTTGIVTIERGYEILADIKKVGGFFRPQPVGDVVEPKSWIVKARTDERARTIAKQLKKSARSSGLHAQDTRGFF 85
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1245.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LMX9_ECTSI2.460e-2155.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1245contigP-littoralis_Contig1245:11128..11731 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size258
Hectar predicted targeting categoryother localisation
Exons2
Cds size258
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789544.228603-CDS-P-littoralis_Contig1245:11127..111701680789544.228603-CDS-P-littoralis_Contig1245:11127..11170Pylaiella littoralis U1_48CDSP-littoralis_Contig1245 11128..11170 +
1680789544.239337-CDS-P-littoralis_Contig1245:11516..117311680789544.239337-CDS-P-littoralis_Contig1245:11516..11731Pylaiella littoralis U1_48CDSP-littoralis_Contig1245 11517..11731 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1245.3.1prot_P-littoralis_Contig1245.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1245 11128..11731 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1245.3.1

>prot_P-littoralis_Contig1245.3.1 ID=prot_P-littoralis_Contig1245.3.1|Name=mRNA_P-littoralis_Contig1245.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=86bp
MSKPATRINVLSTTGLVVIEGGYGLRDKIKQEGGRFQPSAVGDIVAAKSW
VIKTLNDSDARTLAKFLKKSARSAGLEAQVCPTFY*
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mRNA from alignment at P-littoralis_Contig1245:11128..11731+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1245.3.1 ID=mRNA_P-littoralis_Contig1245.3.1|Name=mRNA_P-littoralis_Contig1245.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=604bp|location=Sequence derived from alignment at P-littoralis_Contig1245:11128..11731+ (Pylaiella littoralis U1_48)
ATGTCAAAGCCGGCGACCAGAATTAATGTCCTCAGTACCACAGGTAATGC
TTGGACGAATGCTTTCAACCATTTTGATTGCTGCGCACCTACAAAATTTA
ACCTAATCGACGGCGTCGACATATTTTTCAGCCGCAATAGAACCTTGTCC
ATGTAGCACGATACCTGCAGGAATTCCTCAATAAGCGTTGATGCGCGTCC
GCTCTAATTCCCCTATTCATCGTTCGGATTGGTCCGACAATGGTTTGTGC
CTCATGGATGTCGCACTTTTATTAGCCAAATTATAGCCTCGTGATAGTAC
TCTCGATCCGCCTTTTGACTTATCATTAAACAAAATTTGATTATGTTGAC
AATGATCTAACATGGTCAACGCCTTGTTTCCGCCGGCAGGGCTTGTCGTG
ATTGAAGGCGGGTACGGACTTCGGGATAAAATTAAACAGGAAGGAGGGCG
ATTTCAACCCTCCGCTGTGGGCGACATCGTCGCCGCCAAGTCGTGGGTTA
TCAAAACTCTCAACGACTCCGACGCCCGCACGTTAGCCAAGTTCCTTAAA
AAGAGCGCTCGTTCAGCGGGGTTGGAAGCACAGGTGTGTCCTACTTTCTA
TTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1245:11128..11731+

>mRNA_P-littoralis_Contig1245.3.1 ID=mRNA_P-littoralis_Contig1245.3.1|Name=mRNA_P-littoralis_Contig1245.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=258bp|location=Sequence derived from alignment at P-littoralis_Contig1245:11128..11731+ (Pylaiella littoralis U1_48)
ATGTCAAAGCCGGCGACCAGAATTAATGTCCTCAGTACCACAGGGCTTGT
CGTGATTGAAGGCGGGTACGGACTTCGGGATAAAATTAAACAGGAAGGAG
GGCGATTTCAACCCTCCGCTGTGGGCGACATCGTCGCCGCCAAGTCGTGG
GTTATCAAAACTCTCAACGACTCCGACGCCCGCACGTTAGCCAAGTTCCT
TAAAAAGAGCGCTCGTTCAGCGGGGTTGGAAGCACAGGTGTGTCCTACTT
TCTATTAA
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