mRNA_P-littoralis_Contig1242.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1242.3.1
Unique NamemRNA_P-littoralis_Contig1242.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1242.3.1 vs. uniprot
Match: A0A6H5JVM4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVM4_9PHAE)

HSP 1 Score: 396 bits (1018), Expect = 1.680e-121
Identity = 199/329 (60.49%), Postives = 237/329 (72.04%), Query Frame = 3 
Query: 3837 MQYWHLDVLCEGVATIEVTKSHAKDVCAKMMRSTRQHVHQSVETAMHADFLGGGFGIGISLKAAYARSAISASEHHESFAERMASEEVGTYQIREGETLAMVTLIECDKINNRRNS-NDVDDGNEACFHTVATKPAIYKLSSDAVKNLLTTYPRVVFDLSWKLRLGTWKIKAECLSTREIEDLTTLKIYARPKLIVHSVGSTVGRDAGWVDVLPGMFISVRSGCFVDTIHLGNTRWGGTGGSEHNFEPACDQVITTIGGRSGWVLDRVYFGLSPEGGHDNIISRGIGGDGGVEFCWNPEKVGRIYRIGAHTNWYQGYDVISELRIESTM 4820
            M YWHL+VL +G  T+ V    AK V  K++  T +HV  S++ +MHAD+LGGGF IGIS KA+ ARS +SASE     AE M   +  +Y + +G+TLAM+TL+ECDKINN       VDDG+EACFHTV   P +Y L+   V+NLLTT+P   FD SW  RLGTW +KA  LST  IED TTL IY+RPKLI HSVG   GR   WV V PGMFISVR+G FVD+I LGNT WGG GG   + +P CD+VITTIGGR+G VLDRVYFG+SPE GHD+ I+RGIGG GG EFCWNPEKVGRIYRI A + W  GY+VIS+LRI STM
Sbjct:    1 MLYWHLNVLHDGAGTVVVNSKVAKSVYQKIVHKTTKHVQHSMQASMHADYLGGGFSIGISPKASQARSTLSASEDQRILAEHMTWNQTVSYTLVDGQTLAMITLMECDKINNSYGPLGSVDDGDEACFHTVRESPTVYLLTRGLVENLLTTFPGYAFDTSWAARLGTWGVKASVLSTSAIEDSTTLTIYSRPKLIEHSVGKVKGRYLDWVTVRPGMFISVRAGGFVDSISLGNTTWGGVGGFTRSLQPECDEVITTIGGRAGDVLDRVYFGVSPERGHDSEINRGIGGAGGKEFCWNPEKVGRIYRISAESGWCNGYNVISKLRILSTM 329
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1242.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JVM4_9PHAE1.680e-12160.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1242contigP-littoralis_Contig1242:8319..14467 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size5954
Hectar predicted targeting categoryother localisation
Exons2
Cds size987
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789543.8626516-UTR-P-littoralis_Contig1242:8318..121541680789543.8626516-UTR-P-littoralis_Contig1242:8318..12154Pylaiella littoralis U1_48UTRP-littoralis_Contig1242 8319..12154 +
1680789543.8986907-UTR-P-littoralis_Contig1242:13336..144671680789543.8986907-UTR-P-littoralis_Contig1242:13336..14467Pylaiella littoralis U1_48UTRP-littoralis_Contig1242 13337..14467 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789543.8725169-CDS-P-littoralis_Contig1242:12154..125081680789543.8725169-CDS-P-littoralis_Contig1242:12154..12508Pylaiella littoralis U1_48CDSP-littoralis_Contig1242 12155..12508 +
1680789543.883095-CDS-P-littoralis_Contig1242:12703..133361680789543.883095-CDS-P-littoralis_Contig1242:12703..13336Pylaiella littoralis U1_48CDSP-littoralis_Contig1242 12704..13336 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1242.3.1prot_P-littoralis_Contig1242.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1242 12155..13336 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1242.3.1

>prot_P-littoralis_Contig1242.3.1 ID=prot_P-littoralis_Contig1242.3.1|Name=mRNA_P-littoralis_Contig1242.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=329bp
MQYWHLDVLCEGVATIEVTKSHAKDVCAKMMRSTRQHVHQSVETAMHADF
LGGGFGIGISLKAAYARSAISASEHHESFAERMASEEVGTYQIREGETLA
MVTLIECDKINNRRNSNDVDDGNEACFHTVATKPAIYKLSSDAVKNLLTT
YPRVVFDLSWKLRLGTWKIKAECLSTREIEDLTTLKIYARPKLIVHSVGS
TVGRDAGWVDVLPGMFISVRSGCFVDTIHLGNTRWGGTGGSEHNFEPACD
QVITTIGGRSGWVLDRVYFGLSPEGGHDNIISRGIGGDGGVEFCWNPEKV
GRIYRIGAHTNWYQGYDVISELRIESTM*
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mRNA from alignment at P-littoralis_Contig1242:8319..14467+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1242.3.1 ID=mRNA_P-littoralis_Contig1242.3.1|Name=mRNA_P-littoralis_Contig1242.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=6149bp|location=Sequence derived from alignment at P-littoralis_Contig1242:8319..14467+ (Pylaiella littoralis U1_48)
TGATCTCAGGGCCCCGCGTGCGCAAGCGGGGCCAGGTGAGACGCAATCAC
ACGGGCGTGGCTTCCTGTCGCAACCACACAGCAGCCGTAGCAGCAGCAGC
AGCTGCGTACCGATATATATGACAGCCCGGTCTATTGGGGAGCACTTGCG
TGTGTGTGTGTCCCCGTGTGGGATTTTTTACTCGCCTTTTCCGAAATTAC
AAAGGACCCAAAAAGTCGAACATCGAACTATCCGCTTGTTCGACGTTCGA
TGTTCGAGTCCACAAAAATTACGTAGGCCCCACCCTGAAGATCCACATTC
CCGCCCCACCCAAGCTTAGACTTGCACATGTGAGAGTGCTGGTGCGCTGG
TCAACCGCTGTACACAAGGTGCATTTCCCAGTGCTCTAGCAACACACACA
CGCGTTCGCCATCTAGGTGCTGCCGAAGCTGAAGGAATGGGTGGAGTGTG
TCTGAACGTCTCGGTGCTTCTGCAATGACCGAATAGGTAAAAGAAAGTTG
ACCCCAAGACCTTACAAGTAGAGCACATGTAAAGCCCTAACTCCTGAGGG
GGGGCTCTGCCATATCACACATGTCATACCCCACACGCCCCGTAGACCAT
CACCGGATGCCAAGTATCCCGAACAGCCCCCCTTCTTCGTACTCCGATAC
GATCTACGCTAATATCTTTATATCACCAGGAAAAACGGCGATCACAATCC
AAGACTCAAGTTTGAATCATCAATCATACTAATTCGATGTAATCTTTCTA
GAAAACATTCAACACAAACTACGTTCTCTGAAAACCATTGAATCGGCCCA
CACCAAATTCAGATTTTCTTAAATGCAATATCAATTAACAAATCACCATC
TCAAGAAACATTCTCTACGAAACTAACCACGCCATTTAACAAAAGACGTC
TCACCCAAACATAAAATCAACAGAAATGATCAAATTCCTCTTGTCTATTT
CATATCGCGAAAATCAACGTCTCTCTCAGTTACACTTGCGAAAACATCAA
ATTCGCTTCTCAATACTTTCTCAAGCAGTCAAAACACAGGAATTATCCTC
GGAAAATACTCGTAAGGAATCAACATCCCGTTAGAGTAAAGTAGAACAAT
GATGTTCCTCTACCATCCGGAGATTGTACTCTGCAGGAATAATATCATAT
CTCAACTCATCGACCAATTTCAATAAATCCCCGAAAGCCTTAAGCTCCAA
CAACTATTCATCAAAACATGTCTCATCCATCCTCCAAAATGAAAACATAA
ATCAAACCAGCAAACCGATTAAGTAAGAAGGCCCAACGAGTCAGGCAGCG
TCGGATATAACCTAAATCGATTGTACTAAGTTCTATTCCTTCACATGCAT
ATTACGAATATGCAATGCCCCGCTGCCGTAGCATTCACCATGAAAACAAA
GCCAAATCACAAACGGCAAAAACATGCACTTGCGCGAGAAATCGATTCCC
GAGTAGTAACCATTCGTAGCTTATTTCCATCGTCACACGCGTGAGAACAA
AACCAAGACAAAGTAAAATAGCGTAGAAAAATCTCAACAATGTTCCCGAA
ATTTCATTCCTCCGGAACTAAAACAAAAGAAAAACTCAAAATTAAACTCC
AAAATATCGAATATCATGCTTTCTGCGTCACTACGTGCCTGATCGGGTGC
AAGGAACCCTTGTTGATGACGTGTTTCAAGGACTCATGTTGTCGGTGTTA
TAACACTGCTGGTCAAACAGGGGAAACGAAAGGTGCCCCCCCAGCTCCTG
CTGCAGTACACCCGCGGTCACTCCAAAACACTACCCCCCCAGCATAAAGC
CCACCGCCCTTCATGCTGCAAAACGGGTGTGTCACACGCAGATATCCCCA
TGCTCCGTCCCGCACTCCGCGAACAGCGCGCTCCCGAAACTCGGTCCCGC
GACCCAGTTTCCCGCGATCGAAAGGGTATTGCCCTTCGACTTGAACAGCA
ACGTGCAGGTCCGTGTCCCCGCCGTGGCTGCTGCTGTCGCTGTTGTTGCT
GCTGTCGCTGATGCTGCTACTGCTGTCACCATCGGAGTCCTCCTCCGACT
GCAGCAGTGACCTGTTAAAGTCCAATGCCTCCAAAACAGGTAGTTGCGCC
CCCAAAACCAACTCCTCCAGGGGTAACAAGAGGTAATACCGTCATCGGAT
CTTCTTCCGAAGCCATTGAAACACAACATCCTGGCTCCGCTGCTGTGTTG
CTCCAGAACCAACGGCCGATCCGCACTCTCAGCCGCCGATGGGTCCGTGT
GCCCCTCCGTTTTGCTGCGGTCGCCAACGTCATGTCCAGCGCTAGCCGCA
AGAGAACAATCAGGCACCCCAAAGTCGCGTGGCTGGTTGGAGGGAGAAGA
AGCAATGCCAAAAGATGCGCAATGCCAAAAGATGCTGCAGCCCTGCTCGC
CAATTCCAGCTTGAAGCGCTCGATCTCAGCAAGCATAAGCTCTCGCTCCG
TCGCTGCTTGCCTTTGCCTGGCAGTAGCTGCCACTGCTCGCGCATGCGCA
TCGTCTGCCCGAGCTATTGCTTTCGCTTCCGCCACTTTCCACTCATTAAT
CACCTCCTCTGCCCGTCGCCGCGCGTAAGCTTCCGCTAGTGCCTCAGCCC
TTGCCTCCTCAGCTTGCTGAACAGCAGTAGCTTGTTCCAGCCGCAAGCGT
GCGTTTTCCGCGTGGAGATGCACACGCGCTGCCGCAATTGTTGCTGCCTC
TTGCACTACCTCACGCATGGTGGCCTTCGCCGCTCTCTCCAATTGCGTTA
CTGCTGTAGCATAACCTCGGGCACTCTGGTTTGTCTCCCATACAGCAGTA
CAGCAGTGGGTATCTCGCCTTACCCCAAAACAAAATATATATATGACACT
CCCGCTGCTTGAAGTTTGACAAACAGCTGACGCAGATATAACACTCACAC
ACACACACACTTTTTGTGCTGTGTCGGCCTTGTGCCACCGTCTCAGCTAT
ACACGAACCCTGCTGTCCTTCCACAGCTTAACTCTTGAATCTGCTGTCGC
TTCACAGCTTAGTAACTCTTGAACATGCTGTCCTTCCACAGCTTAAAAAC
TCTTGAATGCGCCACGCTCCGGTACGCCTTGCTGCCCTTCCGCAGAGCAT
GTATATATATATGCGCCACACTTCGGTGCGCTCCTCAGACGTCAATCCTT
AGCAGCCTCCACGAACAGTGTATTTTAATACTCGATATATCGTGTCTGAA
CGTCCCGGTGCTTCTGCAATGACCGAATAGGTAGAAGGTTGACCCCAAGA
CCTTGATTATTAGAGAGTAGCACATGCAAAGCCCTTACCCCCCTTGGCTC
CGCCATATCACACATGTCATACCCCACACGCCCCGTAGATCATCACCTGA
TGCCAAGTACCCCGAACAGAGTGATACCATCAGGACGTATTCGCGGCTGT
GCTGTTTCGTGCTGTGTAGGCAATCGCTGAATTAACCATTGCTGACTGCT
AAGGCTTACTTGTGCATGTTCCAACCGCAACTACATGTACTGCTGCTGAC
AGACCTCCAGTGTACATGTGTTGGACTGCTCTTCTCTGCGACGCGTTATG
CAGTGAAAGGACAGTCCTGGAATTATCGCATGGCGTCTTGAAATTGGCGG
CGTGGTACCCATATCCACCAAAGACTTAACGTAGTCACACGACAACTGCA
CAAACAACGGATTTTTTTTTTTCATGACGTAATTACTTTGAAATAACGAC
CGACGGTCGACGACAACGTCCCTTGAGTATTTAATTAGGGTGGCGCTTTT
GTGACGTGATCTTTGCGTTTGTTGCCCTTCGTCGCCCCTTCCTTCCGTCC
AAAAGCCCTTCGTCGCCCCTCCCTCCCGTCCACAAGATGCAGTACTGGCA
CTTGGATGTCCTGTGTGAAGGGGTCGCTACCATCGAGGTCACCAAGTCAC
ATGCCAAGGACGTGTGTGCCAAGATGATGCGTTCCACGAGGCAGCACGTC
CATCAAAGCGTCGAGACGGCCATGCATGCCGACTTCTTGGGGGGGGGCTT
CGGCATCGGCATCAGCCTCAAGGCCGCCTATGCACGCTCTGCCATATCCG
CCTCTGAACATCACGAGAGTTTTGCCGAGCGCATGGCGTCGGAAGAAGTT
GGCACATACCAAATCCGGGAAGGCGAGACGCTGGCGATGGTTACACTCAT
CGAATGCGACAAGATCAACAACAGAAGGAACTCGAACGACGTAAGTGTAC
AAGGAGTTCCTGTGTGAAAAAGGCTGTGAGCCTTGCCACGCTTCACCGCC
GCATGCTCAACACAATTCACCACAGCACACTCGCCATTCACCCGCCCGTA
CACTACTATGCTCCTTCCAACAATTTTACATACCCAAAACGTACGTGGCT
CCGTTTCCGACGTCATGTCGTCGGTGCTCCTCCAGGTCGACGACGGGAAT
GAAGCTTGCTTCCACACGGTGGCAACCAAGCCGGCCATTTATAAGCTGAG
CAGTGACGCAGTTAAAAACCTTTTAACGACGTATCCACGGGTCGTGTTCG
ACTTGTCGTGGAAGTTGCGGTTGGGCACGTGGAAGATTAAGGCCGAATGC
CTGTCCACTAGGGAAATCGAGGATCTTACCACCCTCAAAATATACGCGCG
GCCCAAATTAATAGTGCATTCTGTAGGCAGCACGGTAGGCAGAGATGCGG
GCTGGGTCGATGTCCTGCCAGGCATGTTCATCAGCGTACGCTCAGGCTGT
TTTGTGGACACGATTCATCTTGGCAACACAAGGTGGGGCGGTACTGGCGG
TTCCGAGCATAACTTTGAACCTGCCTGCGACCAGGTCATCACCACCATTG
GCGGTAGGTCGGGTTGGGTCCTCGACCGTGTGTACTTTGGCCTGTCACCA
GAAGGTGGTCATGATAATATCATATCCCGAGGAATAGGTGGCGACGGGGG
AGTCGAATTTTGCTGGAACCCTGAGAAAGTGGGCCGAATTTATAGAATTG
GTGCGCACACAAATTGGTACCAGGGATATGATGTCATCTCGGAGCTGAGA
ATTGAATCCACCATGTAAAATTTCAATGAGGGTGCAAAAACATGCAGGTA
GGCCAATTTGCGGTGGGAGTTTGCGCGCATGGGCGCGTTCAAGGGCTGAT
GATTTGTACCTCGTGCCAGTGACGATAATTTTTATTTTGAGGTTGGTGTA
GGATATTGAAGCCACAGAAGCCATTTGGTGCAGGTCTTACTCGACGCCTG
ATATCGTCGAGCACGTTGGGATTTCATGGATTCTGGCTTTGATTTTAATA
TGTATTTTGCAGGACGGATTTGACACATGGTTTACTTCATACTAATGTTG
ATTCTCACATTAGCTCACTACCGCCGCAGTCTAGCCCGTGGTCACAAATC
AGGCACATATCGTGCTAGGAGGAAAAAAGAATAAAAAAATACAATATATG
GACTATGATCACGCACAGTAAAATCAGATTTGGTACCGTTGGGGTACTAT
CTGTGGTGGCCAGAATACCGAACAAATACAGAAAAAATTAACAGGCTCGA
AAGAAAAAACAAAAATTGGAAACAGTCCGACAAACAAAAAATAACCAAGA
CAAACCTCAACCATAACCATATACCACACGTACTTCGTAGTACGTCATAC
ATCGAACCACGGCCCAGGGCATGACAGACCAAGGCAAACGCAAACCAGGG
CGATGGCCCAGTAACTGAAAAATGAATAGACGAAAGATAAAAAAAAAATA
AAAAAACAAGATACAGGGAGGGCACAAACACTGACAGACTCCATTCGTAG
ACAAGTACAACAGGTCGCCAAACAAAGAGGAAACATGAGAACGAAAAGGG
AAAGAAGGTTGGAAATCGGGGTTGGGGAGAGGTGATGAAAATAAAATAAA
AGGCATGCAATCAATCGCAAACATGTCTTGCCACGAGGTCTGCCTGTTCA
CGCTTGCTCTCCTCGGTCGCACTCATGCCTCCTGCTGCTGGCACCACCAT
ACCCAGTTGTGTCTGCCCCAAATCTATGGCAGCAGCTACACCACCACTCG
CCCTACAGGTTTTCCACTCCGGCCACCTCGTAGCTTGGCATTGGACTGCT
TCTTGTGCTGTGCAACTTGTGCCCCCCCGTACCCCTCCTCTCGTTTATCC
CCGCCATCCGTTCTCCCTCTTTTGGTCAAGGCCTGCCCCTCAGCCGCGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1242:8319..14467+

>mRNA_P-littoralis_Contig1242.3.1 ID=mRNA_P-littoralis_Contig1242.3.1|Name=mRNA_P-littoralis_Contig1242.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=987bp|location=Sequence derived from alignment at P-littoralis_Contig1242:8319..14467+ (Pylaiella littoralis U1_48)
ATGCAGTACTGGCACTTGGATGTCCTGTGTGAAGGGGTCGCTACCATCGA
GGTCACCAAGTCACATGCCAAGGACGTGTGTGCCAAGATGATGCGTTCCA
CGAGGCAGCACGTCCATCAAAGCGTCGAGACGGCCATGCATGCCGACTTC
TTGGGGGGGGGCTTCGGCATCGGCATCAGCCTCAAGGCCGCCTATGCACG
CTCTGCCATATCCGCCTCTGAACATCACGAGAGTTTTGCCGAGCGCATGG
CGTCGGAAGAAGTTGGCACATACCAAATCCGGGAAGGCGAGACGCTGGCG
ATGGTTACACTCATCGAATGCGACAAGATCAACAACAGAAGGAACTCGAA
CGACGTCGACGACGGGAATGAAGCTTGCTTCCACACGGTGGCAACCAAGC
CGGCCATTTATAAGCTGAGCAGTGACGCAGTTAAAAACCTTTTAACGACG
TATCCACGGGTCGTGTTCGACTTGTCGTGGAAGTTGCGGTTGGGCACGTG
GAAGATTAAGGCCGAATGCCTGTCCACTAGGGAAATCGAGGATCTTACCA
CCCTCAAAATATACGCGCGGCCCAAATTAATAGTGCATTCTGTAGGCAGC
ACGGTAGGCAGAGATGCGGGCTGGGTCGATGTCCTGCCAGGCATGTTCAT
CAGCGTACGCTCAGGCTGTTTTGTGGACACGATTCATCTTGGCAACACAA
GGTGGGGCGGTACTGGCGGTTCCGAGCATAACTTTGAACCTGCCTGCGAC
CAGGTCATCACCACCATTGGCGGTAGGTCGGGTTGGGTCCTCGACCGTGT
GTACTTTGGCCTGTCACCAGAAGGTGGTCATGATAATATCATATCCCGAG
GAATAGGTGGCGACGGGGGAGTCGAATTTTGCTGGAACCCTGAGAAAGTG
GGCCGAATTTATAGAATTGGTGCGCACACAAATTGGTACCAGGGATATGA
TGTCATCTCGGAGCTGAGAATTGAATCCACCATGTAA
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