mRNA_P-littoralis_Contig124.100.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig124.100.1
Unique NamemRNA_P-littoralis_Contig124.100.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig124.100.1 vs. uniprot
Match: A0A6H5KAF3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAF3_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 3.240e-14
Identity = 46/132 (34.85%), Postives = 72/132 (54.55%), Query Frame = 1 
Query:  160 KRGEDEPTMFMV---RFESLF-----RSMELEDAFCRTVPIKVGVLSREELYGQFHRREVDAAYRAWNLLLNSVVDVAMMVRMTAEGSPSGGWSAFKNYYTPQADAEKERARQEWYDLRQGLNEAPKQFFSR 531
            K+GEDE   F++      ++F     R +EL +     +P+    +S EEL        V+    +WNLL+ SV  + ++ ++ A+GSPSGGW  F NYY P+A AEKER   +++ L   + E P+ +F R
Sbjct:   15 KQGEDEQAKFLIFRSNMVAMFAQEGGRDVELTE---EKIPVGKEGVSMEELPRVHSSDSVEKTITSWNLLITSVTYMPILTQIIADGSPSGGWKIFLNYYEPRARAEKERLSSQYHGLEMKVGETPQDYFGR 143
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig124.100.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KAF3_9PHAE3.240e-1434.85Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig124contigP-littoralis_Contig124:518054..518586 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size534
Hectar predicted targeting categoryother localisation
Exons1
Cds size531
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789543.6401136-CDS-P-littoralis_Contig124:518053..5185841680789543.6401136-CDS-P-littoralis_Contig124:518053..518584Pylaiella littoralis U1_48CDSP-littoralis_Contig124 518054..518584 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig124.100.1prot_P-littoralis_Contig124.100.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig124 518054..518584 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig124.100.1

>prot_P-littoralis_Contig124.100.1 ID=prot_P-littoralis_Contig124.100.1|Name=mRNA_P-littoralis_Contig124.100.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=177bp
ATHDIERTDGTSSAGQDTVVQQLITALGRMGTTPNQGSTVSTYSQGSRVE
FTGKRGEDEPTMFMVRFESLFRSMELEDAFCRTVPIKVGVLSREELYGQF
HRREVDAAYRAWNLLLNSVVDVAMMVRMTAEGSPSGGWSAFKNYYTPQAD
AEKERARQEWYDLRQGLNEAPKQFFSR
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mRNA from alignment at P-littoralis_Contig124:518054..518586+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig124.100.1 ID=mRNA_P-littoralis_Contig124.100.1|Name=mRNA_P-littoralis_Contig124.100.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=533bp|location=Sequence derived from alignment at P-littoralis_Contig124:518054..518586+ (Pylaiella littoralis U1_48)
GCCACACACGACATCGAGCGTACGGACGGAACCTCATCTGCGGGACAGGA
CACCGTGGTGCAGCAGCTAATCACTGCGCTGGGAAGAATGGGGACAACGC
CCAACCAAGGGTCGACGGTTAGCACGTATAGTCAGGGGAGTAGAGTGGAA
TTTACTGGAAAGAGGGGGGAAGATGAGCCGACAATGTTCATGGTACGGTT
TGAGTCTTTGTTTCGATCTATGGAGTTGGAAGATGCGTTTTGCAGGACAG
TACCGATCAAGGTAGGAGTGCTGTCCAGGGAGGAATTGTACGGGCAATTT
CACAGACGTGAGGTAGATGCTGCTTACAGGGCTTGGAACCTGCTCCTGAA
CAGTGTGGTAGACGTCGCAATGATGGTTAGGATGACGGCGGAAGGTAGTC
CCAGTGGAGGGTGGTCTGCGTTCAAAAACTATTACACTCCACAGGCAGAT
GCTGAGAAAGAAAGAGCACGACAAGAATGGTATGATTTGCGCCAGGGACT
GAACGAAGCACCAAAGCAGTTTTTCTCCAGGGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig124:518054..518586+

>mRNA_P-littoralis_Contig124.100.1 ID=mRNA_P-littoralis_Contig124.100.1|Name=mRNA_P-littoralis_Contig124.100.1|organism=Pylaiella littoralis U1_48|type=CDS|length=531bp|location=Sequence derived from alignment at P-littoralis_Contig124:518054..518586+ (Pylaiella littoralis U1_48)
GCCACACACGACATCGAGCGTACGGACGGAACCTCATCTGCGGGACAGGA
CACCGTGGTGCAGCAGCTAATCACTGCGCTGGGAAGAATGGGGACAACGC
CCAACCAAGGGTCGACGGTTAGCACGTATAGTCAGGGGAGTAGAGTGGAA
TTTACTGGAAAGAGGGGGGAAGATGAGCCGACAATGTTCATGGTACGGTT
TGAGTCTTTGTTTCGATCTATGGAGTTGGAAGATGCGTTTTGCAGGACAG
TACCGATCAAGGTAGGAGTGCTGTCCAGGGAGGAATTGTACGGGCAATTT
CACAGACGTGAGGTAGATGCTGCTTACAGGGCTTGGAACCTGCTCCTGAA
CAGTGTGGTAGACGTCGCAATGATGGTTAGGATGACGGCGGAAGGTAGTC
CCAGTGGAGGGTGGTCTGCGTTCAAAAACTATTACACTCCACAGGCAGAT
GCTGAGAAAGAAAGAGCACGACAAGAATGGTATGATTTGCGCCAGGGACT
GAACGAAGCACCAAAGCAGTTTTTCTCCAGG
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