mRNA_P-littoralis_Contig124.72.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig124.72.1 vs. uniprot
Match: A0A6H5JBB0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBB0_9PHAE) HSP 1 Score: 211 bits (538), Expect = 1.000e-53 Identity = 124/263 (47.15%), Postives = 169/263 (64.26%), Query Frame = 1
Query: 1777 MDPRVPVLKAAVALNKNHLWKEQVREMLTARDSWGRTLVSHGILSASPQVFEVSMTALRADVLDEEVEALVEDVENYDREKPLVLAEKVGGKSMSASVHAKLGLLKRDVDIRAKASTFDAKLQSFIPGKLIVIFQLLLPEV-PSEKLTLLVVMSAIAPMLAWASVLIARNKSAGEVFVPRSSFYSQTLAAPAMFVWGVGTSRI-FEDSYGWSQNRAAVVLAVGAIIIPAVDGFVNSRRVEQWNDKFFFSRWRFKRKAERRWKK 2559
+DP + VLK+A+AL E+VRE L A DSWGRT+ H +L+ P+VF+ A R +LD+E+ AL+ + + + A + ++M+A V + LKR + + +AST ++K+QSFIPGKLIVIFQLLLPEV S+KLTLL++MSAIAP L+WA+ L+AR K R S S L+APAMF WG+GTS + GW+ + A LAV IIIPA+D F NSR+VEQW DK+ RWRF ++A +W K
Sbjct: 365 LDPGMAVLKSALAL------VEEVREQLKATDSWGRTIFGHAVLTRRPKVFDAVFFAAREHILDDEIAALMGINKEDKSDTVMETALQTVPRAMAARVARRDQELKRAITLEERASTIESKIQSFIPGKLIVIFQLLLPEVGSSDKLTLLIIMSAIAPGLSWAAGLVAREKPGSTE--KRRSLVSLFLSAPAMFFWGLGTSTVGMTHGMGWNDSATAAALAVATIIIPAMDAFFNSRKVEQWYDKWSCQRWRFSQRAHAKWVK 619
BLAST of mRNA_P-littoralis_Contig124.72.1 vs. uniprot
Match: D7FN08_ECTSI (Kinase, NEK n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN08_ECTSI) HSP 1 Score: 167 bits (423), Expect = 9.490e-40 Identity = 98/241 (40.66%), Postives = 141/241 (58.51%), Query Frame = 1
Query: 1789 VPVLKAAVALNKNHLWKEQVREMLTARDSWGRTLVSHGILSASPQVFEVSMTALRADVLDEEVEALVEDVENYDREKPLVLAEKVGGKSMSASVHAKLGLLKRDVDIRAKASTFDAKLQSFIPGKLIVIFQLLLPEVPS-EKLTLLVVMSAIAPMLAWASVLIARNKSAGEVFVP-RSSFYSQTLAAPAMFVWGVGTSRIFEDSYGWSQNRAAVVLAVGAIIIPAVDGFVNSRRVEQWNDK 2505
VPV K AV L LW ++V + L A D WGR++++H +LS +FE + A+R + DE V ++E E + P++ A G M + G LK+DVD R+K ST DAK++ FIPGKL+V+FQLLLP++ +L LL +M A+AP++ A+ + + V RS+ S L APAMF WGVGTS + + + GWS + +A +A + IPAVD F NSR+ DK
Sbjct: 335 VPVFKVAVRLVTRCLWTDEVLQQLKAVDLWGRSVLTHALLSGHEMMFEAAYGAVRDVLQDELVSEMMETNEGEREDTPMIDALARGNTDMRKLYALRAGQLKKDVDARSKLSTMDAKIEGFIPGKLVVMFQLLLPQIAEGRQLILLYIMCALAPLVKLATTGSVDDSDSKHTGVKARSNKLSVLLGAPAMFFWGVGTSTVGQTALGWSSSLSATSMAAATLAIPAVDSFFNSRKASAIGDK 575
BLAST of mRNA_P-littoralis_Contig124.72.1 vs. uniprot
Match: D7FWX2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWX2_ECTSI) HSP 1 Score: 160 bits (404), Expect = 4.720e-38 Identity = 97/240 (40.42%), Postives = 139/240 (57.92%), Query Frame = 1
Query: 1777 MDPRVPVLKAAVALNKNHLWKEQVREMLTARDSWGRTLVSHGILSASPQVFEVSMTALRADVLDEEVEALVED-VENYDREKPLVLA-EKVGGKSMSASVHAKLGLLKRDVDIRAKASTFDAKLQSFIPGKLIVIFQLLLPEVPSE---KLTLLVVMSAIAPMLAWASVLIARNKSAGEVFVPRSSFYSQTLAAPAMFVWGVGTSRIFEDSYGWSQNRAAVVLAVGAIIIPAVDGFVNSR 2481
+DPR+PV++AA+ + +LW + R++L ARD W R+++ H I+S Q+FE A R DV DE+++ L++ VE + L A G M+ V K LK DV R ST AK+Q+FIPG LIVIFQLLLPE L LL+V+ IAP +W + + V R + T A+PAMF WGVGTS+I +S+ W+++ +A LAV I+IPA+D + + R
Sbjct: 131 LDPRLPVIQAALEFARANLWMPEYRKLLEARDGWHRSIIEHAIMSGRTQIFEAVFNAFRRDVHDEKIDLLLDPGVETSHAQTSLRRAMNSQEGTPMAQLVREKTTSLKSDVTKRKDDSTVAAKIQAFIPGNLIVIFQLLLPEFDESGDGPLYLLLVLCFIAPFWSWGAAMS----------VKRDPETTNTRASPAMFFWGVGTSKIAPNSFNWAESASAAALAVATIVIPALDTYFSGR 360
BLAST of mRNA_P-littoralis_Contig124.72.1 vs. uniprot
Match: A0A6H5KM21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM21_9PHAE) HSP 1 Score: 157 bits (398), Expect = 1.950e-36 Identity = 94/240 (39.17%), Postives = 136/240 (56.67%), Query Frame = 1
Query: 1777 MDPRVPVLKAAVALNKNHLWKEQVREMLTARDSWGRTLVSHGILSASPQVFEVSMTALRADVLDEEVEALVED-VENYDREKPLVLA-EKVGGKSMSASVHAKLGLLKRDVDIRAKASTFDAKLQSFIPGKLIVIFQLLLPEVPSE---KLTLLVVMSAIAPMLAWASVLIARNKSAGEVFVPRSSFYSQTLAAPAMFVWGVGTSRIFEDSYGWSQNRAAVVLAVGAIIIPAVDGFVNSR 2481
+DPR+PV++A + + +LW + R++L ARD W R+++ H I+S Q+FE A R D+ DE+++ L++ VE + L A G M+ V K LK DV R ST AK+Q+FIPG LIVIFQLLLPE L LL+V+ IAP +W + + R + LA PAMF WGVGTS+I +S+ W+++ +A LAV I+IPA+D + + R
Sbjct: 249 LDPRLPVIQAVLEFARANLWMPEYRKLLEARDGWHRSIIEHAIMSGRTQIFETIFNAFRRDIHDEKIDLLLDPGVETSHAQTSLRRATNSQEGTPMAQLVQEKTTSLKSDVSKRKDDSTVAAKIQAFIPGNLIVIFQLLLPEFDESGDGPLYLLLVLCFIAPFWSWGVAMSVKRDPEITNTRARQTAAKYFLAIPAMFFWGVGTSKIAPNSFNWAESASAAALAVATIVIPALDTYFSGR 488
BLAST of mRNA_P-littoralis_Contig124.72.1 vs. uniprot
Match: D7FST7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FST7_ECTSI) HSP 1 Score: 85.9 bits (211), Expect = 1.230e-13 Identity = 54/133 (40.60%), Postives = 82/133 (61.65%), Query Frame = 1
Query: 1777 MDPRVPVLKAAVALNKNHLWKEQVREMLTARDSWGRTLVSHGILSASPQVFEVSMTALRADVLDEEVEALVEDVENYDREKPLV-LAEKVGGKSMSASVHAKLGLLKRDVDIRAKASTFDAKLQSFIPGKLIV 2172
+DP + VLK+A AL K +VRE L A DSWGRT+ H +L+ P+VF+ A R +LD+E+ AL+ + D+ ++ A + ++M+A V + LKR + + +AST ++K+QSFIPGKLIV
Sbjct: 321 LDPGMAVLKSAWALVK------EVREQLKATDSWGRTIFGHAVLTRRPKVFDAVFFAAREYILDDEIAALM-GINKEDKSDTIMETALQTVPRAMAARVARRDQELKRAITLEERASTIESKIQSFIPGKLIV 446 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig124.72.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig124.72.1 >prot_P-littoralis_Contig124.72.1 ID=prot_P-littoralis_Contig124.72.1|Name=mRNA_P-littoralis_Contig124.72.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=783bp MPQSLEVGALARTISALLASSSHALLNALERGNIAEVRSALMNIEGRLIRback to top mRNA from alignment at P-littoralis_Contig124:427645..459215+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig124.72.1 ID=mRNA_P-littoralis_Contig124.72.1|Name=mRNA_P-littoralis_Contig124.72.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=31571bp|location=Sequence derived from alignment at P-littoralis_Contig124:427645..459215+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig124:427645..459215+ >mRNA_P-littoralis_Contig124.72.1 ID=mRNA_P-littoralis_Contig124.72.1|Name=mRNA_P-littoralis_Contig124.72.1|organism=Pylaiella littoralis U1_48|type=CDS|length=2349bp|location=Sequence derived from alignment at P-littoralis_Contig124:427645..459215+ (Pylaiella littoralis U1_48)back to top |