mRNA_P-littoralis_Contig124.49.2 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig124.49.2 vs. uniprot
Match: D7FRT0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRT0_ECTSI) HSP 1 Score: 486 bits (1251), Expect = 4.080e-157 Identity = 246/283 (86.93%), Postives = 258/283 (91.17%), Query Frame = 2
Query: 2531 FCKRGRPAADGAVAAHRKSKPHGRNSRIRTRMGTEFEDENAKEKLKAMLNRQFGIGDTSRPDEWCKPTDVLQTGTVLLADPKAFTTSGYPKMLEKFGLAQPLPGSDQIPPDRAADLLPVILVVGKDRGRTIGLMLNRRTGVLMGDLGDDFRSFMIQPLWLGGTQGENGITFIHTYPEVEGAQAISEEEGLYFSGDMESASKVVTDGPGSGFNFRFFAQITVWGPGELEAEVDEGLWRPAVASKMALLRVRDRKGPDVAKPMWSDLSQMAGGEYLKTMEDFYRR 3379
F G PA GAVA+ S RN++IR RMGTEFEDENAKEKLKAMLNRQFGIGDTSRPDEWCKPTDVLQTGTVLLADPKAFTT +PKML+KFGLAQPLPGS+QIPPDRAADLLPV+L+VG D GRTIGLMLNRRTGVLMGDLG+DF SFMIQPLWLGGTQGENGITFIHTYPEVEGAQAISEEEGLYFSG+MESASKVVTDGPGSGFNFRFFAQITVW GELEAEVD GLWRP VASKMALLRVRDRKGPDVAKPMW+DLSQMAGGEYL ME+FYRR
Sbjct: 31 FAATGLPA--GAVASRSTS---WRNNKIRPRMGTEFEDENAKEKLKAMLNRQFGIGDTSRPDEWCKPTDVLQTGTVLLADPKAFTTRSHPKMLDKFGLAQPLPGSEQIPPDRAADLLPVVLLVGIDAGRTIGLMLNRRTGVLMGDLGNDFTSFMIQPLWLGGTQGENGITFIHTYPEVEGAQAISEEEGLYFSGNMESASKVVTDGPGSGFNFRFFAQITVWKAGELEAEVDRGLWRPVVASKMALLRVRDRKGPDVAKPMWADLSQMAGGEYLAAMEEFYRR 308
BLAST of mRNA_P-littoralis_Contig124.49.2 vs. uniprot
Match: A0A835YZZ3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZZ3_9STRA) HSP 1 Score: 270 bits (690), Expect = 9.840e-78 Identity = 147/252 (58.33%), Postives = 179/252 (71.03%), Query Frame = 2
Query: 2621 RMGTEFEDENAKEKLKAMLNRQFGIG-DTSRPDEWCKPTDVLQTGTVLLADPKAFTTSGYPKMLEKFGLAQPLPGSDQIPPDRAADLLPVILVVGKDRGRTIGLMLNRRTGVLMGDLGDDFRSFMIQPLWLGGTQGENGITFIHTYPEVEGAQAISEEEGLYFSGDMESASKVVTDGPGSGFNFRFFAQITVWGPGELEAEVDEGLWRPAVASKMALLRVRDRKGPDVAKPMWSDLSQMAGGEY--LKTMED 3367
RMG E+ DE A+ KL+ MLN+QFG G T + DEW KP D + GTVLLADP+ F G K L++FGL +P+P I PDR ADLLP IL+V +IG+MLNRRTG+LMGDLG+D +FMIQP++LGGT G ++FIHTYPEV A+ ++ E+GL+F GD +SA V +G GSGFNFRFF Q T WGPGEL AEV+ G W A KM+LLRVRDRKGPD AKPMW+DL MAG E LK + D
Sbjct: 66 RMG-EYMDEEAQRKLRDMLNKQFGKGAGTVKADEWAKPADAIGVGTVLLADPRPFF-KGDAKTLQRFGLPEPIP--QVISPDRQADLLPCILLVQHGPRGSIGVMLNRRTGMLMGDLGEDMSAFMIQPIFLGGTLGSQSLSFIHTYPEVAQAEQVT-EDGLFFGGDFKSAVHCVREGIGSGFNFRFFVQYTQWGPGELGAEVNAGRWHAVSAGKMSLLRVRDRKGPDTAKPMWTDLLTMAGEEQPELKNVVD 312
BLAST of mRNA_P-littoralis_Contig124.49.2 vs. uniprot
Match: A0A4D9D9B7_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D9B7_9STRA) HSP 1 Score: 172 bits (436), Expect = 1.300e-43 Identity = 88/227 (38.77%), Postives = 136/227 (59.91%), Query Frame = 2
Query: 2717 EWCKPTDVLQTGTVLLADPKAFTTSGYPKMLEKF--------GLAQPLPGSDQIPPDRAADLLPVILVVGKDRGRTIGLMLNRRTGVLMGDLGDDFRSFMIQPLWLGGTQGENGITFIHTYPEVEGAQAISEEEGLYFSGDMESASKVVTDGPGSGFNFRFFAQITVWGPGELEAEVDEGLWRPAVASKMALLRVRDRKGPDVAKPMWSDLSQMAGGEYLKTMEDFY 3373
+W + L+ G VL+A+P F + +F GL G Q D A++LPV+L++G G T GL+LNRRTG L+GDL D F IQP+ LGGT +GI +HTYPE+E A ++ +GL+F G+ +A ++V + S F+FF Q T+W PGEL+ E+++ +W PA SK +L+ R R+GP +AKP+W+++ ++ GG +L+ ++ Y
Sbjct: 88 DWAVYSSALRGGVVLVANPAVFLAGPPAGLASRFLLPSDLSLGLFSSFGGESQQAIDNLANILPVVLLLGSGSGGTSGLVLNRRTGYLVGDLNVDSSGFKIQPVHLGGTGESDGIFMVHTYPELERATQVT-NDGLFFGGNYTAAQELVREQGASSSRFKFFIQQTLWAPGELKREIEDKVWYPAQVSKDVILKNRGREGPKMAKPLWTEVLELMGGSFLEIKKELY 313
BLAST of mRNA_P-littoralis_Contig124.49.2 vs. uniprot
Match: A0A7S2B470_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B470_9STRA) HSP 1 Score: 156 bits (395), Expect = 3.850e-40 Identity = 81/169 (47.93%), Postives = 109/169 (64.50%), Query Frame = 2
Query: 2870 ADLLPVILVV-GKDRGRTIGLMLNRRTGVLMGDLGDDFRSFMIQPLWLGGTQGENGITFIHTYPEVEGAQAISEEEGLYFSGDMESASKVVTDGPGSGFNFRFFAQITVWGPGELEAEVDEGLWRPAVASKMALLRVRDRKGPDVAKPMWSDLSQMAGGEYLKTMEDFY 3373
A+L+PVI+V G + +GLMLNRRTG LMGDL D FMIQPL GGTQ ++F+H YPE+ G+ I E+GLY+SG+ + A +V G S F FRFF Q W GELE ++ + W PA SK +L++R+R+G KP+W+D+ +AGG Y + EDFY
Sbjct: 1 ANLMPVIIVTSGSESEGYMGLMLNRRTGYLMGDLEQDVSGFMIQPLNFGGTQPPADLSFLHPYPEIGGSTQIG-EDGLYYSGNFKDAQMLVEKGTCSQFKFRFFIQCVRWEKGELEKQMAKNTWCPAQVSKDVILKIREREGSRRPKPLWTDVMDLAGGNYGELSEDFY 168
BLAST of mRNA_P-littoralis_Contig124.49.2 vs. uniprot
Match: A0A7S2DJT8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DJT8_9STRA) HSP 1 Score: 162 bits (410), Expect = 8.410e-40 Identity = 92/240 (38.33%), Postives = 137/240 (57.08%), Query Frame = 2
Query: 2711 PDEWCKPTDV---LQTGTVLLADPKAFTTSGYPK-MLEKFGLAQPLPGSDQIPPDRAADLLPVILVVGKDRGRTIGLMLNRRTGVLMGDLGD-DFRSFMIQPLWLGGTQGE-NGITFIHTYPEVEGAQAISE-------------EEGLYFSGDMESASKVVTDGPGSGFNFRFFAQITVWGPGELEAEVDEGLWRPAVASKMALLRVRDRKGPDVAKPMWSDLSQMAGGEYLKTMEDFY 3373
P W K + L+ G V+L +PK F P+ ML +FGL QP+P ++ + P+ A+LLPVIL+V D G GL+LNRRTG LMG+L D D F +QPL LGG E + +++IH Y E+ G + +S E L+ G+ + A +V + GF F+FF T W PG+LE ++ + + PA S LL++R+R+G A P+W+++ ++AGG Y +DFY
Sbjct: 121 PSYWSKTVAIEGALRPGLVVLGNPKLFCNEEAPEEMLMQFGLRQPVPNAEDLDPNSRANLLPVILLVETDNGPAKGLLLNRRTGYLMGELKDKDVSGFRVQPLNLGGMADEASDLSYIHPYAELSGCEGLSSDYDNDNAGDRKEGESSLFLGGNFKEAQDMVQEEIFDGFKFKFFGGCTRWEPGQLEQQLKDQVLLPAECSADLLLKIREREGDKRATPLWTEIMELAGGAYADICKDFY 360
BLAST of mRNA_P-littoralis_Contig124.49.2 vs. uniprot
Match: A0A7S1UHR3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UHR3_9STRA) HSP 1 Score: 158 bits (400), Expect = 4.560e-39 Identity = 84/199 (42.21%), Postives = 120/199 (60.30%), Query Frame = 2
Query: 2702 TSRPDEWCKPTDVLQTGTVLLADPKAFTTSGYPKMLEKFGLAQPLPGSDQIPPDRAADLLPVILVVGKDRGRTIGLMLNRRTGVLMGDLGDD--FRSFMIQPLWLGGTQGENGITFIHTYPEVEGAQAISEEEGLYFSGDMESASKVVTDGPGSGFNFRFFAQITVWGPGELEAEVDEGLWRPAVASKMALLRVRDRKG 3292
T EW +P G +L+A+P AF P K+G+ PG +PPDR A+LLPV+++ ++ G +LNRRTG++MGDL + R F +QP+W GG GE ++ +HTYP+VEGA+ IS +GL+ G E+A VT+G SG+NF+FF Q+ WG G LE EV G W PA S ++++R+R G
Sbjct: 114 TPEATEWVQPCGGPVGGGLLIANPDAFFED--PMFQGKYGVQGFAPGD--LPPDRLAELLPVVMLYMHGDLQSAGFVLNRRTGMMMGDLAEQHGLRCFQVQPIWYGGPHGEGQLSMVHTYPQVEGARKIS--DGLWLGGSFEAAQDEVTEGIASGWNFKFFLQVDAWGAGSLEDEVRRGWWLPARCSPQVVMKIRERGG 306
BLAST of mRNA_P-littoralis_Contig124.49.2 vs. uniprot
Match: A0A1E7FXR6_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FXR6_9STRA) HSP 1 Score: 158 bits (400), Expect = 7.640e-39 Identity = 99/271 (36.53%), Postives = 136/271 (50.18%), Query Frame = 2
Query: 2714 DEWCKPTDVLQTGTVLLADPKAFTTSGY---------------------------PKMLEKFGLAQPLPGSDQIPPDRAADLLPVILVVGKDRGRTIGLMLNRRTGVLMGDL--------GDD----------FRSFMIQPLWLGGTQGEN-GITFIHTYPEVEGAQAISEEEGLYFSGDMESASKVVTDGPG-----SGFNFRFFAQITVWGPGELEAEVDEGLWRPAVASKMALLRVRDRKGPDVAKPMWSDLSQMAGGEYLKTMEDFY 3373
++W KP + ++ GTVL+A+P+ F G P +L KFGL QP P + DR ADLLPV++VV D G+ G++LNRRTG L+GDL DD F IQPLW GG + G+ +H P V AQ I+ E+G+Y+ GD A + D P SGF+F+FF Q T+W G L+ EVD+ +W A S L + RDR G AKP+W+++ + G EY + FY
Sbjct: 58 EDWAKPMEGIRPGTVLIANPRKFCEDGDFGDSGSDDNESTGVKDFLKFGWSSKPDPSLLAKFGLTQPPPR--HLGADRQADLLPVVIVVSTDGGQIQGVLLNRRTGYLLGDLEQPAEDGSSDDNNDNNDMAPILEKFCIQPLWFGGIDSLSVGLDMLHLCPTVNDAQQIT-EDGMYWGGDPTQAQDAMED-PSLDRIYSGFDFKFFVQSTIWSSGVLQGEVDDNIWFQANVSNNVLFKSRDRMGTKKAKPLWTEILDLMGDEYSDITKRFY 324
BLAST of mRNA_P-littoralis_Contig124.49.2 vs. uniprot
Match: B7G772_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G772_PHATC) HSP 1 Score: 157 bits (397), Expect = 8.560e-38 Identity = 99/249 (39.76%), Postives = 134/249 (53.82%), Query Frame = 2
Query: 2717 EWCKPTDVLQTGTVLLADPKAFTTS--------GYPKMLEKFGLAQPLPGSDQIPPDRAADLLPVILVVGKDRG-RTIGLMLNRRTGVLMGDLGDD----------------FRSFMIQPLWLGGTQGEN-GITFIHTYPEVEGAQAISEEEGLYFSGD---MESASKVVTDGPGSGFNFRFFAQITVWGPG-ELEAEVDEGLWRPAVASKMALLRVRDRKGPDVAKPMWSDLSQMAGGEYLKTMEDFY 3373
+W +P +Q G VLLA+P+ F + PK+L KFGL P P + PDR ADLLPV++VV G R ++LNRRTG L+GDL F IQPLW GG + G+ +H P V A+ +S +EGLY+ GD + A VTD +GF+F+FF Q TVWG EL+ E+D G W A SK L + RDR G AKP+W+++ ++ GG+Y T + Y
Sbjct: 141 DWSEPVSSIQKGMVLLANPEQFCSDFGGGRRKMPSPKLLAKFGLTLPPPAD--LGPDRRADLLPVLIVVECGEGSRVRAVLLNRRTGYLLGDLEQADTNLGSTSSKKAPTPVLEKFCIQPLWFGGVDNVSAGLDMLHQCPTVPDAEPLS-DEGLYWGGDPALAQDAMDEVTDKVLTGFDFKFFVQSTVWGSSKELQKEIDNGTWFTARVSKEVLFKSRDRMGTRRAKPLWTEVMELLGGKYKDTRDMLY 386
BLAST of mRNA_P-littoralis_Contig124.49.2 vs. uniprot
Match: A0A7S1BTP6_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BTP6_9STRA) HSP 1 Score: 158 bits (400), Expect = 8.840e-38 Identity = 102/293 (34.81%), Postives = 152/293 (51.88%), Query Frame = 2
Query: 2690 GIGDTSRPDEWCKPTDV--LQTGTVLLADPKAFTTSGYPK-----------------------------MLEKFGLAQPLPGSDQIPPDRAADLLPVILVVGKDR---GRTIGLMLNRRTGVLMGDLGDD--------FRSFMIQPLWLGGTQGENGITFIHTYPEVEGAQAISEEEGLYFSGDMESASKVVTDGP-GSGF---NFRFFAQITVWGPGELEAEVDEGLWRPAVASKMALLRVRDRKGPDVAKPMWSDLSQMAGGEYLKTMEDFYRR*HDGVKRASS*RQEVVL 3430
G D + PD C+ +V ++ G LLA+P F + + + +L KFGL P P ++ PDR ADLLPV+L++ D G + +++NRRTG L+GDL D FMIQPLW GGT G +G+T +H VEG++ I+ E+G+YF GD+ S ++++G GSGF NF+FF Q T W P +L+ EV G W A K L + RDR G KP+W+++ ++ GE K D Y + + + R + ++E +L
Sbjct: 135 GKDDATNPDWACEVGEVSEIRPGMFLLANPNHFCDADWKRNSNSDKEGEGGQRQQQMPWIRSKGGPSTSLLSKFGLTLPPPS--ELGPDRQADLLPVLLILSHDPSIVGGSTAVLVNRRTGYLLGDLESDDGAGPLAGLSPFMIQPLWFGGTSGGSGMTVVHQCEGVEGSEKIT-EDGIYFGGDVGSVGTLLSEGDAGSGFSSFNFKFFVQNTRWLPLQLDKEVRNGTWIAASVGKNVLFKPRDRNGVKPNKPLWTEIMELLEGENSKIKLDLYGKSKEEINRGAGWQEEEIL 424
BLAST of mRNA_P-littoralis_Contig124.49.2 vs. uniprot
Match: A0A7S4AE40_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AE40_9STRA) HSP 1 Score: 156 bits (395), Expect = 4.670e-37 Identity = 101/280 (36.07%), Postives = 143/280 (51.07%), Query Frame = 2
Query: 2693 IGDTS-RPDEWCKPTDVLQTGTVLLADPKAFTTSG-----------------------------YPKMLEKFGLAQPLPGSDQIPPDRAADLLPVILVVGKDRGRTIGLMLNRRTGVLMGDL---------GDD-------FRSFMIQPLWLGGTQGEN-GITFIHTYPEVEGAQAISEEEGLYFSGDMESASKVVTDGPG-----SGFNFRFFAQITVWGP-GELEAEVDEGLWRPAVASKMALLRVRDRKGPDVAKPMWSDLSQMAGGEYLKTMEDFY 3373
+ DT P++W K T ++ GTVL+A+P F G P +L KFGL QP P + DR ADLLPV++VVG + G+ G++LNRRTG L+GDL G++ F IQPLW GG + G+ +H P V A I+ E+ +Y+ GD A + D P SGF+F+FF Q T+W G L++EVD+ +W PA S+ L + RDR G AKP+W+++ + G +Y ME+FY
Sbjct: 164 VADTDVAPEDWAKETSEIRPGTVLVANPSKFCDEGDYGRMSGDDNEPSGGGKDFFAAALGRTGPAPSLLAKFGLTQPPPR--HLGADRQADLLPVVIVVGTEGGQVQGVLLNRRTGYLLGDLEQPSADGSSGENNEDMAPILEKFCIQPLWFGGIDSLSVGLDMLHLCPTVRDATKIT-EDNVYWGGDPAQAQDAMED-PSLDRMYSGFDFKFFVQSTIWSNVGTLQSEVDDKIWFPAKVSQKILFKSRDRMGTKKAKPLWAEIMGLMGDKYSVVMENFY 439 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig124.49.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig124.49.2 >prot_P-littoralis_Contig124.49.2 ID=prot_P-littoralis_Contig124.49.2|Name=mRNA_P-littoralis_Contig124.49.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=332bp MLGIQTAQILVNMSTWVRVSVRLTLIISSSHSLALFLSLSPPPVHDPLFCback to top mRNA from alignment at P-littoralis_Contig124:281054..292053- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig124.49.2 ID=mRNA_P-littoralis_Contig124.49.2|Name=mRNA_P-littoralis_Contig124.49.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=11000bp|location=Sequence derived from alignment at P-littoralis_Contig124:281054..292053- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig124:281054..292053- >mRNA_P-littoralis_Contig124.49.2 ID=mRNA_P-littoralis_Contig124.49.2|Name=mRNA_P-littoralis_Contig124.49.2|organism=Pylaiella littoralis U1_48|type=CDS|length=996bp|location=Sequence derived from alignment at P-littoralis_Contig124:281054..292053- (Pylaiella littoralis U1_48)back to top |