mRNA_P-littoralis_Contig124.7.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig124.7.1
Unique NamemRNA_P-littoralis_Contig124.7.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig124.7.1 vs. uniprot
Match: A0A6H5KHG3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG3_9PHAE)

HSP 1 Score: 150 bits (380), Expect = 2.350e-40
Identity = 98/183 (53.55%), Postives = 116/183 (63.39%), Query Frame = 2 
Query:  416 MTARPDGAAVEGEEDAIFDEPM--VGEELEGLMG-EPPSVSNESALALISKKHATTHPETIRDFIADTAARLAIESGCVDEAPLVLRGRITRRRNVRPTPVSSPRKLDLQRVLDRQTKRDGAPDYLLAKGRGTKVTRTLSTDLLYVGQGNQCPAGASMIAALKVFAGQGENSIPREIVSAMCK 955
            MTARPDGAA EG ED +FD+P+  VGEELEGL+   PPS S+   LA+I++ HA   PETIRDFI +TAARLA ESGC  EAPLV      + R    T       +  ++VLDRQ   DG P Y LAK    +V    S DL   G+GNQC AG  M AAL+VFAG+  + IP EIV AMCK
Sbjct:    1 MTARPDGAAEEGGEDTLFDDPVEVVGEELEGLLRLSPPSTSSTPVLAIITQ-HAIDSPETIRDFIEETAARLAKESGCQHEAPLVT---WKQDREAATTCGRLQAGVLSRKVLDRQMTHDGDPGYCLAKRVRNQVYYDTSIDLDCHGKGNQCSAGTCMKAALQVFAGEARDGIPSEIVRAMCK 179
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BLAST of mRNA_P-littoralis_Contig124.7.1 vs. uniprot
Match: A0A6H5L174_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L174_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 6.110e-20
Identity = 51/90 (56.67%), Postives = 64/90 (71.11%), Query Frame = 2 
Query:  392 AVVAERRSMTARPDGAAVEGEEDAIFDEPMVGEELEGLMGEPPSVSNESALALISKKHATTHPETIRDFIADTAARLAIESGCVDEAPLV 661
            A+ +   SMTAR  GAA EGE D IFD+P+VGEE+EGLMG+PPSVS++  LA + +KHA   PET+R FI + A  LAI +GC    PLV
Sbjct:   50 AIESPEXSMTARSRGAAPEGEPDPIFDDPVVGEEIEGLMGDPPSVSDDEELAAV-RKHAIESPETVRAFIKERARSLAIGAGCPHSLPLV 138
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BLAST of mRNA_P-littoralis_Contig124.7.1 vs. uniprot
Match: A0A6H5KC02_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC02_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 1.770e-19
Identity = 49/83 (59.04%), Postives = 61/83 (73.49%), Query Frame = 2 
Query:  413 SMTARPDGAAVEGEEDAIFDEPMVGEELEGLMGEPPSVSNESALALISKKHATTHPETIRDFIADTAARLAIESGCVDEAPLV 661
            SMTAR  GAA EGE D IFD+P+VGEE+EGLMG+PPSVS++  LA + +KHA   PET+R FI + A  +AI +GC    PLV
Sbjct:   10 SMTARSRGAAPEGEPDPIFDDPVVGEEIEGLMGDPPSVSDDEELAAV-RKHAIESPETVRAFIKERARSVAIGAGCPHSLPLV 91
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BLAST of mRNA_P-littoralis_Contig124.7.1 vs. uniprot
Match: A0A6H5KC65_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC65_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 2.160e-19
Identity = 50/83 (60.24%), Postives = 61/83 (73.49%), Query Frame = 2 
Query:  413 SMTARPDGAAVEGEEDAIFDEPMVGEELEGLMGEPPSVSNESALALISKKHATTHPETIRDFIADTAARLAIESGCVDEAPLV 661
            SMTAR  GAA EGE D IFD+P+VGEE+EGLMG+PPSVS++  LA + +KHA   PET+R FI + A  LAI +GC    PLV
Sbjct:   53 SMTARSRGAAPEGEPDPIFDDPVVGEEIEGLMGDPPSVSDDEELAAV-RKHAIESPETVRAFIKERARSLAIGAGCPHSLPLV 134
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BLAST of mRNA_P-littoralis_Contig124.7.1 vs. uniprot
Match: A0A6H5KG83_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG83_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 3.350e-15
Identity = 72/188 (38.30%), Postives = 97/188 (51.60%), Query Frame = 2 
Query:  416 MTARPDGAAVEGEEDAIFDEPM-VGEELEGLMG-EPPSVSNE-SALALISKKHATTHPETIRDFIADTAARLAIESGCVDEAPLVLRGRITRRRNVRPTPV----SSPRKLDLQRVLDRQTKRDGAPDYLLAKGRGTKVTRTLSTDLLYVGQGNQCPAGASMIAALKVFAGQGENSIPREIVSAMCKY 958
            MTA   GA  EGE D +FD P+  GE   GL+  EPPS+S+E +A+A++  +HA  HPETI  FI   A  LA E  C    P V     + + +   T      S+   L   R+ D  T+    P Y +AK    +     + DL   G+GNQ  AG  M AA KVFAG G + +P E+V AM ++
Sbjct:    1 MTAPSRGAVAEGEYDPLFDSPVDAGELCSGLVRVEPPSLSSEDTAVAIL--QHARLHPETIGSFIQKKAEELA-EGVCDHHQPPV-----SWQEDPSTTSCGLHQSASAVLAAVRLQDVFTRYKDDPGYCVAKRVRNQGYYDTAKDLGCFGRGNQLKAGECMCAATKVFAGDGNDGLPTEVVKAMLQH 180
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BLAST of mRNA_P-littoralis_Contig124.7.1 vs. uniprot
Match: A0A6H5J8W1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8W1_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 5.660e-13
Identity = 44/79 (55.70%), Postives = 55/79 (69.62%), Query Frame = 2 
Query:  371 PLRTNDSAVVAERRSMTARPDGAAVEGEEDAIFDEPMVGEELEGLMGEPPSVSNESALALISKKHATTHPETIRDFIAD 607
            PL    S   A   SMTAR  G+A EGE D IFD+P+VGEE+EGLMG+PPSVS++  LA + +KHA   PET+R FI +
Sbjct:  679 PLNRCSSGGAAAPGSMTARSRGSAPEGEPDPIFDDPVVGEEIEGLMGDPPSVSDDEELAAV-RKHAIESPETVRAFIKE 756
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BLAST of mRNA_P-littoralis_Contig124.7.1 vs. uniprot
Match: A0A6H5JL74_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL74_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 6.910e-7
Identity = 27/36 (75.00%), Postives = 31/36 (86.11%), Query Frame = 2 
Query:  416 MTARPDGAAVEGEEDAIFDEPMVGEELEGLMGEPPS 523
            MTAR  GAA EGE D IFD+P+VGEE+EGLMG+PPS
Sbjct:    1 MTARSRGAAPEGEPDPIFDDPVVGEEIEGLMGDPPS 36
[Close]
BLAST of mRNA_P-littoralis_Contig124.7.1 vs. uniprot
Match: A0A6H5KKJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKJ8_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 1.510e-5
Identity = 28/62 (45.16%), Postives = 36/62 (58.06%), Query Frame = 2 
Query:  773 PDYLLAKGRGTKVTRTLSTDLLYVGQGNQCPAGASMIAALKVFAGQGENSIPREIVSAMCKY 958
            P Y +AK    +V    + DL   G+GNQ  AG  M AA KVFAG G + +P E+V AM +Y
Sbjct:   28 PGYCVAKRVRNQVYYDTAKDLGCFGRGNQLKAGECMRAATKVFAGDGNDGLPTEVVKAMLQY 89
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig124.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5KHG3_9PHAE2.350e-4053.55Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L174_9PHAE6.110e-2056.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KC02_9PHAE1.770e-1959.04Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KC65_9PHAE2.160e-1960.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KG83_9PHAE3.350e-1538.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J8W1_9PHAE5.660e-1355.70Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JL74_9PHAE6.910e-775.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKJ8_9PHAE1.510e-545.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig124contigP-littoralis_Contig124:81799..83849 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1057
Hectar predicted targeting categoryother localisation
Exons2
Cds size546
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789540.6890852-UTR-P-littoralis_Contig124:81798..818941680789540.6890852-UTR-P-littoralis_Contig124:81798..81894Pylaiella littoralis U1_48UTRP-littoralis_Contig124 81799..81894 -
1680789540.7290657-UTR-P-littoralis_Contig124:83434..838491680789540.7290657-UTR-P-littoralis_Contig124:83434..83849Pylaiella littoralis U1_48UTRP-littoralis_Contig124 83435..83849 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789540.705154-CDS-P-littoralis_Contig124:81894..821191680789540.705154-CDS-P-littoralis_Contig124:81894..82119Pylaiella littoralis U1_48CDSP-littoralis_Contig124 81895..82119 -
1680789540.7174532-CDS-P-littoralis_Contig124:83113..834341680789540.7174532-CDS-P-littoralis_Contig124:83113..83434Pylaiella littoralis U1_48CDSP-littoralis_Contig124 83114..83434 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig124.7.1prot_P-littoralis_Contig124.7.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig124 81895..83434 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig124.7.1

>prot_P-littoralis_Contig124.7.1 ID=prot_P-littoralis_Contig124.7.1|Name=mRNA_P-littoralis_Contig124.7.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=182bp
MTARPDGAAVEGEEDAIFDEPMVGEELEGLMGEPPSVSNESALALISKKH
ATTHPETIRDFIADTAARLAIESGCVDEAPLVLRGRITRRRNVRPTPVSS
PRKLDLQRVLDRQTKRDGAPDYLLAKGRGTKVTRTLSTDLLYVGQGNQCP
AGASMIAALKVFAGQGENSIPREIVSAMCKY*
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mRNA from alignment at P-littoralis_Contig124:81799..83849-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig124.7.1 ID=mRNA_P-littoralis_Contig124.7.1|Name=mRNA_P-littoralis_Contig124.7.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2051bp|location=Sequence derived from alignment at P-littoralis_Contig124:81799..83849- (Pylaiella littoralis U1_48)
CATTTTTGTGCGGGACAACTGAAAAAAAAGTACGTTCTTGTAGGGGGGAC
GAATAAGGGGGTTCTGTTAACATGTAAAAATGGACCCCCCCTCATGCACA
GCATATGTGGTTCAATACCACCACACGACGCTGCTGGAACTGCAACCAGG
GCGGCTCTGTGATACTGCCACGCCACAAGCGCGGAGGTGAAACGAATGGA
GTCTAGCACTAGGTTAGATGCGAAGCGGGCGCGCAAGTCCACACACGTAC
ACCAAAGCTTCTCCCACAAAAGAGAGGTAGACGCAACGAAACAGCAGAAA
GAGGAGCAGCAGCAGCAGCAGCAGCAGGAACACAGCAGCAGCAGTAGCAG
CAGCAGCCCGCGGGAGAGCGCCATTGCGGACCAACGACTCAGCCGTGGTG
GCTGAGCGGCGCTCCATGACCGCACGCCCCGATGGTGCTGCAGTGGAGGG
CGAGGAGGATGCCATCTTTGACGAGCCCATGGTGGGGGAGGAGCTAGAGG
GTTTGATGGGAGAGCCGCCGAGTGTCAGCAATGAATCCGCACTGGCTCTC
ATCAGCAAGAAGCATGCCACGACCCACCCCGAGACCATCCGCGACTTCAT
CGCGGATACAGCTGCTCGGCTTGCGATCGAATCGGGTTGTGTAGACGAGG
CGCCGCTCGTTCTACGTGGAAGGATAACTCGGCGCAGAAACGTGCGGCCA
ACACCAGTCTCGTCTCCTCGGAAGCTTGACCTCCAGGTGATTCACCACAG
CAAAAAATCGCATGTTGTGCAGCCTACTGCTATATGGTCGTGTGTGCAAG
AAAGAAAGTCGCACCCTATATTCGATACTGCTGTGGTCCTCTCTTCCTTC
CTTCATTGCCTGGTATGTTTTTGCTTGCCCTGTTCACACGACCGCTGTAC
TAAACGTATCCTATAATACTTACCCGTAATTTGTACAAGTGAATCACGTG
CATAACAGTTACCCATAATTTGTGTTTGTATGGTAGCATTCGGGTTGTCG
TGTAACACAGCACACCATGTTCTGGAAACCTATCAGCCAGCCTACTACGT
GCTTGCCTCAAAACCAACACATAGCTATACTACAGCATACCTGTACGACA
TCCAAGGTCGGATGGTCCTGCTGTTTGGCGTTCGTGTTCGTTCTATTTGC
TGTGATATTAGTGCGCATACAGACCATCATGGCAGCAGCTACACCGCCAT
GTCAGAAGAGTGATATTTCTGCTGCTGTTGTTGCTTTAGCTTTGGTTTCC
TGCGCCAACACCACCACCGCAGCCGCAGTAGGAGCACCTCGATGAAAAGT
GCTGCTACTGCTGCTGCTGCTGTTGTTGTTATCTTCTTTCGTACGGTAAC
ACATATCGCCATGAGCCAGTCAGCACTCTAATGACAGCAGTAGCAGCAGT
ACTTGTAGCATGGTAAGATTGAGACGTCGCTGGATATACACAGCCGGATA
TGTACAACTGGGATTGTCTGCGGGCCGAAACGATAGGGTGGAGGGTAGTG
CGGGTAAATACCAACCGACACGCTGCGGATTTCTTTTTTGCTGAAAAGTT
AGCAGTAATTTTTCCTCGTCCGTTCTTTCTTGTGATATGGTCAAACGAAA
GTTGTATAACTGCGGGAAACCCATGACCACGGGCAAAGTATTTCAGCATG
CTCTCACCTGCCCCCGCCCCCCTCTCCATCTCCCCGCCCACTTCCCTCCC
CTGTTCTTGACTGACTTTGAATTATTTTAGCGTGTGCTCGACAGGCAAAC
CAAACGCGACGGCGCCCCTGATTACCTCCTTGCGAAAGGACGAGGAACCA
AAGTTACTAGGACACTTTCTACAGACTTGCTCTACGTCGGGCAGGGGAAC
CAATGTCCGGCGGGGGCTTCCATGATCGCCGCTCTGAAGGTGTTCGCGGG
GCAGGGGGAGAATAGTATCCCCCGCGAGATTGTCTCCGCCATGTGCAAGT
ACTAAGAACGGGCAGATGTTCTATGGTATTCCTGTAGGCTTAGGTCTCAT
GTCGGGGTGTGCGAGGGGGGTGAAACTTCCGTTCGATGGGCGGGGCGCGA
A
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Coding sequence (CDS) from alignment at P-littoralis_Contig124:81799..83849-

>mRNA_P-littoralis_Contig124.7.1 ID=mRNA_P-littoralis_Contig124.7.1|Name=mRNA_P-littoralis_Contig124.7.1|organism=Pylaiella littoralis U1_48|type=CDS|length=546bp|location=Sequence derived from alignment at P-littoralis_Contig124:81799..83849- (Pylaiella littoralis U1_48)
ATGACCGCACGCCCCGATGGTGCTGCAGTGGAGGGCGAGGAGGATGCCAT
CTTTGACGAGCCCATGGTGGGGGAGGAGCTAGAGGGTTTGATGGGAGAGC
CGCCGAGTGTCAGCAATGAATCCGCACTGGCTCTCATCAGCAAGAAGCAT
GCCACGACCCACCCCGAGACCATCCGCGACTTCATCGCGGATACAGCTGC
TCGGCTTGCGATCGAATCGGGTTGTGTAGACGAGGCGCCGCTCGTTCTAC
GTGGAAGGATAACTCGGCGCAGAAACGTGCGGCCAACACCAGTCTCGTCT
CCTCGGAAGCTTGACCTCCAGCGTGTGCTCGACAGGCAAACCAAACGCGA
CGGCGCCCCTGATTACCTCCTTGCGAAAGGACGAGGAACCAAAGTTACTA
GGACACTTTCTACAGACTTGCTCTACGTCGGGCAGGGGAACCAATGTCCG
GCGGGGGCTTCCATGATCGCCGCTCTGAAGGTGTTCGCGGGGCAGGGGGA
GAATAGTATCCCCCGCGAGATTGTCTCCGCCATGTGCAAGTACTAA
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