mRNA_P-littoralis_Contig124.59.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig124.59.1
Unique NamemRNA_P-littoralis_Contig124.59.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig124.59.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig124contigP-littoralis_Contig124:331428..332612 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1083
Hectar predicted targeting categorymitochondrion
Exons3
Cds size687
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789540.400499-UTR-P-littoralis_Contig124:331427..3318231680789540.400499-UTR-P-littoralis_Contig124:331427..331823Pylaiella littoralis U1_48UTRP-littoralis_Contig124 331428..331823 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789540.4096134-CDS-P-littoralis_Contig124:331823..3320161680789540.4096134-CDS-P-littoralis_Contig124:331823..332016Pylaiella littoralis U1_48CDSP-littoralis_Contig124 331824..332016 +
1680789540.4200578-CDS-P-littoralis_Contig124:332108..3324061680789540.4200578-CDS-P-littoralis_Contig124:332108..332406Pylaiella littoralis U1_48CDSP-littoralis_Contig124 332109..332406 +
1680789540.431576-CDS-P-littoralis_Contig124:332416..3326121680789540.431576-CDS-P-littoralis_Contig124:332416..332612Pylaiella littoralis U1_48CDSP-littoralis_Contig124 332417..332612 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig124.59.1prot_P-littoralis_Contig124.59.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig124 331824..332612 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig124.59.1

>prot_P-littoralis_Contig124.59.1 ID=prot_P-littoralis_Contig124.59.1|Name=mRNA_P-littoralis_Contig124.59.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=229bp
MSARMASKHRRLTLMRTLSAHRCSSSNGNRNKKSKGTTSSLLRGRLAGRH
NAHPSASAAQKNAGRNDDQEQRLREVVAMGQESPAPTEEKQSALRQDVGQ
QPPEPTEELTQRPGKARNETQAPIEEEAPKMEQPTPTFHGDVELLLPDSG
RLMAVPEQGELVPCSSSSSSSHQSRWLAVSLSVRSPKIHILLQPKRHPRQ
RRRARGGGAHSFQECHHHRYQQQRNRSQD
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mRNA from alignment at P-littoralis_Contig124:331428..332612+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig124.59.1 ID=mRNA_P-littoralis_Contig124.59.1|Name=mRNA_P-littoralis_Contig124.59.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1185bp|location=Sequence derived from alignment at P-littoralis_Contig124:331428..332612+ (Pylaiella littoralis U1_48)
TCGAGAAACCCCCAGCGGCGGTTTCTCTTGCTGGGATGGGCGCCAGGGTT
AGGGTTTTCGCTGCGATGAAGTCGCGATCATTCTACACCTCGGGTTCGTT
GACGACAAAGCCGCGATCTTCTTCCTTACCGATTGCTCCGGCGAAGCGGA
TTTCTCTGACGAAGAATCAATCATCGTCGCAAACGGCGGCGAAAGATAAG
GTCATCGACGACGACGGCATGTTCGTGTACGTCGGAGACAGTGAGAACGG
GACAGCGGAGGGGTTGCTCTCCTCTCGCGGCGGAGGCAAGAGCAGCGTGG
GACAGCAGCCGCTACAGCAACAGGAACAGCAGCGGCGACAACATCAGCAC
CGGCTCGTGGAAGCTCTGAGCAGTAACGACATCAACTGCAGCAGTCATGT
CTGCACGAATGGCCAGCAAACACCGCCGCCTTACGCTGATGCGCACCCTG
AGCGCTCACAGATGCAGCAGCAGCAACGGCAACCGCAACAAGAAGAGCAA
AGGCACAACAAGCAGCCTCCTGCGCGGCCGCCTGGCCGGCCGGCACAACG
CCCACCCCAGCGCCTCAGCAGCACAGAAAAACGCTGGTCGCAGCCAGAAG
AGAAAAATACAGTCACGGGTGCGGTGGTGTTGGAGGAAGAGAAATGTGAA
CTGGCCCAGCTAGAAGATATAGGTGCCCAAGGCAATGATGATCAGGAACA
GCGTCTGAGAGAGGTGGTAGCCATGGGGCAGGAGTCACCGGCGCCAACGG
AAGAAAAACAGTCGGCTCTGCGGCAAGACGTAGGGCAGCAGCCACCAGAG
CCGACGGAGGAGCTCACCCAGCGGCCGGGGAAAGCCAGGAACGAAACACA
GGCGCCGATTGAAGAGGAGGCGCCGAAGATGGAGCAGCCCACGCCGACCT
TCCATGGCGACGTCGAACTCCTGCTCCCGGACTCCGGGCGTCTGATGGCG
GTGCCGGAGCAAGGTGAGCTCGTGCCCTGGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCCACCAAAGCCGCTGGTTAGCCGTAAGCCTCAGCGTGCGT
TCGCCCAAAATTCACATCCTGCTGCAGCCAAAAAGACATCCAAGACAGCG
ACGTCGGGCTCGAGGGGGCGGGGCGCATTCTTTCCAGGAGTGCCACCACC
ACCGCTACCAACAACAGCGGAATCGATCTCAGGAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig124:331428..332612+

>mRNA_P-littoralis_Contig124.59.1 ID=mRNA_P-littoralis_Contig124.59.1|Name=mRNA_P-littoralis_Contig124.59.1|organism=Pylaiella littoralis U1_48|type=CDS|length=687bp|location=Sequence derived from alignment at P-littoralis_Contig124:331428..332612+ (Pylaiella littoralis U1_48)
ATGTCTGCACGAATGGCCAGCAAACACCGCCGCCTTACGCTGATGCGCAC
CCTGAGCGCTCACAGATGCAGCAGCAGCAACGGCAACCGCAACAAGAAGA
GCAAAGGCACAACAAGCAGCCTCCTGCGCGGCCGCCTGGCCGGCCGGCAC
AACGCCCACCCCAGCGCCTCAGCAGCACAGAAAAACGCTGGTCGCAATGA
TGATCAGGAACAGCGTCTGAGAGAGGTGGTAGCCATGGGGCAGGAGTCAC
CGGCGCCAACGGAAGAAAAACAGTCGGCTCTGCGGCAAGACGTAGGGCAG
CAGCCACCAGAGCCGACGGAGGAGCTCACCCAGCGGCCGGGGAAAGCCAG
GAACGAAACACAGGCGCCGATTGAAGAGGAGGCGCCGAAGATGGAGCAGC
CCACGCCGACCTTCCATGGCGACGTCGAACTCCTGCTCCCGGACTCCGGG
CGTCTGATGGCGGTGCCGGAGCAAGGTGAGCTCGTGCCCTGCAGCAGCAG
CAGCAGCAGCAGCCACCAAAGCCGCTGGTTAGCCGTAAGCCTCAGCGTGC
GTTCGCCCAAAATTCACATCCTGCTGCAGCCAAAAAGACATCCAAGACAG
CGACGTCGGGCTCGAGGGGGCGGGGCGCATTCTTTCCAGGAGTGCCACCA
CCACCGCTACCAACAACAGCGGAATCGATCTCAGGAC
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