prot_P-littoralis_Contig1239.1.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig1239.1.1
Unique Nameprot_P-littoralis_Contig1239.1.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length96
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig1239.1.1 vs. uniprot
Match: D8LHE6_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHE6_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 3.780e-16
Identity = 52/82 (63.41%), Postives = 57/82 (69.51%), Query Frame = 0 
Query:   11 SRGDGYSRGSAMDTLTTTSVSTVTRGVALHWKPRLNTDLGSFVYPSIMLERPDEGLQPEGSLQDLSGSGGSRKGSARSRSGN 92
            SRGD  SRGS MDTLTTTSVSTVTRGVAL WKPRLN +LGSFVYPS+MLE+    LQ +     L+G    R   A   SGN
Sbjct:  231 SRGDDCSRGS-MDTLTTTSVSTVTRGVALQWKPRLNVELGSFVYPSLMLEK-SACLQIDAPADSLAGGSRRRLAEASGSSGN 310
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1239.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LHE6_ECTSI3.780e-1663.41Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..27
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 71..96
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 58..96

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1239contigP-littoralis_Contig1239:1090..7670 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1239.1.1mRNA_P-littoralis_Contig1239.1.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig1239 1090..7670 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig1239.1.1 ID=prot_P-littoralis_Contig1239.1.1|Name=mRNA_P-littoralis_Contig1239.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=96bp
GRHRRRAKHDSRGDGYSRGSAMDTLTTTSVSTVTRGVALHWKPRLNTDLG
SFVYPSIMLERPDEGLQPEGSLQDLSGSGGSRKGSARSRSGNRLQK
back to top