mRNA_P-littoralis_Contig1239.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1239.1.1
Unique NamemRNA_P-littoralis_Contig1239.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1239.1.1 vs. uniprot
Match: D8LHE6_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHE6_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 3.780e-16
Identity = 52/82 (63.41%), Postives = 57/82 (69.51%), Query Frame = 1 
Query:   31 SRGDGYSRGSAMDTLTTTSVSTVTRGVALHWKPRLNTDLGSFVYPSIMLERPDEGLQPEGSLQDLSGSGGSRKGSARSRSGN 276
            SRGD  SRGS MDTLTTTSVSTVTRGVAL WKPRLN +LGSFVYPS+MLE+    LQ +     L+G    R   A   SGN
Sbjct:  231 SRGDDCSRGS-MDTLTTTSVSTVTRGVALQWKPRLNVELGSFVYPSLMLEK-SACLQIDAPADSLAGGSRRRLAEASGSSGN 310
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1239.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LHE6_ECTSI3.780e-1663.41Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1239contigP-littoralis_Contig1239:1090..7670 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LHE6
Model size290
Max annot lvl2880.D8LHE6|-
Hectar predicted targeting categoryother localisation
Exons4
Evalue6.2e-17
EggNOG OGsKOG4308@1|root,KOG4308@2759|Eukaryota
Descriptioninterleukin-8 biosynthetic process
Cds size288
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789539.978481-CDS-P-littoralis_Contig1239:1089..11481680789539.978481-CDS-P-littoralis_Contig1239:1089..1148Pylaiella littoralis U1_48CDSP-littoralis_Contig1239 1090..1148 -
1680789539.9895756-CDS-P-littoralis_Contig1239:1919..20171680789539.9895756-CDS-P-littoralis_Contig1239:1919..2017Pylaiella littoralis U1_48CDSP-littoralis_Contig1239 1920..2017 -
1680789539.9979587-CDS-P-littoralis_Contig1239:4623..46981680789539.9979587-CDS-P-littoralis_Contig1239:4623..4698Pylaiella littoralis U1_48CDSP-littoralis_Contig1239 4624..4698 -
1680789540.0120938-CDS-P-littoralis_Contig1239:7614..76701680789540.0120938-CDS-P-littoralis_Contig1239:7614..7670Pylaiella littoralis U1_48CDSP-littoralis_Contig1239 7615..7670 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1239.1.1prot_P-littoralis_Contig1239.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1239 1090..7670 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1239.1.1

>prot_P-littoralis_Contig1239.1.1 ID=prot_P-littoralis_Contig1239.1.1|Name=mRNA_P-littoralis_Contig1239.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=96bp
GRHRRRAKHDSRGDGYSRGSAMDTLTTTSVSTVTRGVALHWKPRLNTDLG
SFVYPSIMLERPDEGLQPEGSLQDLSGSGGSRKGSARSRSGNRLQK
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mRNA from alignment at P-littoralis_Contig1239:1090..7670-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1239.1.1 ID=mRNA_P-littoralis_Contig1239.1.1|Name=mRNA_P-littoralis_Contig1239.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=6581bp|location=Sequence derived from alignment at P-littoralis_Contig1239:1090..7670- (Pylaiella littoralis U1_48)
GGAAGGCATCGACGTCGGGCCAAGCATGACTCTCGGGGGGACGGGTATTC
GAGGGGGTGAGTTCGCCAAAACAAGCAACACCTTGTTCCGCGTATGATAC
ACCGGCCACAGCTCCTGCTGCCCCTTCTCATATCATCTTAGCATCGGGAA
GACGTGTATTTTTGTATTTTTGGGGAAAGCGAGTACACCCAAAGCTTTGG
TTAGGATTTTGTCTTGTATGTGAAGTTAAGTTTTGCAAATGATTTAAAAA
AGGGGCATTATTCGAGGACACTTTTCACTTTTCAACGCAAGAATATAGAG
GTATCATACGAGATGAGTTTCGGGCTCGTTGAAACAGTCCATCTTCTCCT
GTGGTTCGCGAGCTGTGGTCAGTAGCCTACGCAGCTTTGGTTAAGTAAAC
ATAGGGGGTGAAGGATGGAAATTGCCAACTTGGCATCCCTCTGCTCCTTT
TTTGAGGAGCCCTTGAATTCATATTGGCCTTGGGAGGGGGGGCGTTGGTT
GGGGTTCGGGGTTAGGGTTAGGGTCAAGGTTAAGGATAGTGTTAAAATGC
GTTGGGCAGTCCCTTCCTCATCACATCACGTAGTTTTTACTTTGTCTTCG
ATGCCTCTACCAAAAACGTTATCTTTAGGATAAAGTATAAAAAAACTTGG
CAACCTACATACTTTATCCTACATGTTTCCTTAACCAACCTGCGAAGGCG
GCCCGCTGTGGTGTGGCTGAAACGTTGCCCTAGGCCTATCCTTGAGCTGT
GAACTCAAAAGTGAGGGAAAAGTTGACAGGTCGAAGCTTCTTGAGTGAGG
AAAAACCAGAGGTTAAAGCTTGTTCGTTCCATACTAAAACGCACTTTCGC
CCTTCCCATCAATGTACCTGGTATCAGACAAACCAATAGTCGAAGCTTCT
TCGTGTCATGCTGAAACGTATAGTTTCGTTTTTTCCATCGATATGTCCTA
CTGTACCTGCTCTTTTCTTTCATTTTTCCTCTTGGTTCCAGCGTCTTGAG
GCAGCTGGTGAGTCCTCCTCTCGTGTAAACTACTGACTATTACAGTACTC
AACAGAGGGGTTTCAAACGGCTGTGTTTTCTGCACACTGTCGTTCCGGGG
AAGAATTGTCTCTGAGTGTGTTATGTCAACGACAACAACAGCAACAACAA
CACGAACAACGACGCAAACAAGCATACTGTAAAACAACAGAAGCGTCCAT
CTCGTGCGGTGGTTGCAGAAGCGGCGGCGATTTCATCGGCATGAGACTTT
GAGAATATGGTGGGGTTTTTTTTCGTCTGAACTCGCAAGAGCAAGCATAA
CACACCAACAAATACAGTAGCGACAACACTGTCCTGCACTCTAACACCAA
AAATTCAATGTGGTACGTGTGTTATTTTCAGTGCGAACCCCCACGGAATA
TGATAATCATTCCGGGGGGGGGGGGGCAACAACCAGTCCAGGGGGGTGAG
CTTGACATTGGTCAAGGAGGGGGGGGGGGGGTCAATCAATCCGGAGGGGG
GGTGGTCAATCAGTTCAGGTGGCCTGAAATGAGTCAAGGGAGGGGAGGGG
GGGGGCGATATCAATCGATCCGCGCGGTCAACAACCAGTCCAGGGCGGGG
AGATTTCAATTATCAAGGAGGGGGTGGGGGGGCGATGTCAATCGTCCGGG
GGGGGGAGGGGTTAGCAATCAGTTCGCGTGAGGGGGCTTGAAACTAGTCC
AGGGGATGTCAGTCAATCCTGGGGGGGGTCAAATAATCAGTCAAGGTGGT
CGGGGCTTGAAATTAGTCGCGGAAGGGGGATGTCAACCAATCCAGGGGGG
GGTTGGCAACCAGTCCAGTTGGCGGGGCTTGAAACTAGCCCAGGAGGGGG
GGCTTAAAATCGGCCCAGGGGGGGGGGCAAGAACCGATCCATGGAAGAGG
GGAGGGGGGGGGTCCACGAGATATCACAGGTTTCAAGGGGAAATCTACAT
GTTTGCAGTGAAAGCCCAACCAGCCACTTTATACTCGTAAATGGGACTAT
GGTGGTATCTTGAAAGCGAAATACTTTGAAAAAATACAATTTCAACCTTC
AAGCATGGTGGTTGTTCGGTAGCTCCTTGCTGTTTTTTTAGTCGAGCATC
CGCATAATACCGTTTGAAAGTTAAATATTTCTCATGCTGCTGCCTTCCTC
CGAAGCAGGAAGAAACCGATTTTCCCGCAACAACATCAGATTATCAACAT
TCATGTCTACTATAATATTCCGCACCCAGATAAATGTGGTTAATACAGGT
ATTTTTACCGCACGTCCGTGAAGATTTTGGCTCCGCCTTCGCTAAATGCA
CCGATATTGACATTATTGACTTCGGCACCTGGGAACAGTTCTAATTGTTG
ACATGCTGTTGACAATACTATATTCGATAGGTACCGTGTGTGGACGTAGC
ATACCACACGCCCTTGACTGCTTTTTTAAAAGCTCGATGAATTTATCGGG
TAGAGTATCGATGCCGGCAGCGATATGGTGGCAAAAGGAACATCTCGCAG
AGAGCTTTACGATAATAATACTTTGTACACTCGTATCGTCCCGTGAAAAT
CGGTCCAGGGGGCGTGGAATCTTGTGTCATTTCGTCTACGGTACCCCCCC
CCCATCCCGTGTCCTACTGTGCCCTTCCTATGGCCGCATCCTGGTTAAAA
CGACGTGAGAAACCACACCCCCTGGACTGATTTTGAAAGCTCGATTGGTC
AATAAATCATAGCAACACGAGTGTCAGTGCCGATGATTGGAGGCGTAAAA
AACAATCTCGTCCAGAACTTTTCTACAACGTGCAGGGAAGGGACTAGCAC
CCTCTTGGGACCTGTAAAACGTCGGCCCTGGGGGTCCCGTGGTATGATGT
GTCTTAGTCACCTACGGTATTATCAGTGTTGATGCTGACTGACATTGATT
GGTTGACGTTTGTGTTGATACTATTAATTACCGTTTCGTTTCAACCGCCA
AAACCGCGCGCTCATGAGAAAGCTCCGCCATGGATACGCTGACGACGACG
AGCGTGTCGACGGTTACAAGAGGCGTGGCACTGCATTGGAAACCCAGGTA
TGATTGGTGCCATACACTTGTACTTCGAAGGATGTTTTTCCTTCCATGTT
TCTAAGGTGTTCTGTGGCCTCTCGGGAGGATACCGGTTAACCCTCTTGCC
CTGACGTAGCTAAAGGTCGCCATTTTGGGTCGAAGTTTTGTTACTGGTCG
CCTGGAATATAACGTGACTCTCATGGCTAAACTTTTACCTCGCTCGCCGC
TTAATTTCAAAACATGGTTTATAAGCAAGTGAACGCGTCGCCAAAACAAC
GGCGACGCGTTCACCTGCTTTTGTAGAGGTTTTGTTTAAAAAATTGTTCC
ATGATTTTTCACAGGGGGATAAAGGGGTTAACACGAAACGAGGCCAAGAA
GAACATGTGCCGCGATGCGAAGCCACGGTTGGGATTTTTGCTCTGTTTCC
GTTGTTCTGCGAAGTTACTGTATTGGCTGTGTGCGGTTTTTCGATGGTTG
GGGGCCGTCGGATGGGAATCACTTCGTGTCGTGCCTGGTTGTCATCTATC
TATCTGACGGGCCTTTGTTTTGCAACAAGGCCCACAGCGCGAACTACTTC
CACGGCCATTCATGAGAGGCGCAGCAATGAATCGAGTTGACCCATCCATG
CGGGATTGATTTCGTTGACATTTTGTTTCGTCTCGTGGTCACGCTTCCAA
CGTGGCGGAGAAAACCTCCAAGGGTGTGTCGGGTAGGGTAGGGAATCATG
TGTACCCGGGTAGCAATACCCGTACCCGACCGTTTGGGTACCATGATTCC
GACATCAAAACCCCGACCCGTTTGTCGGGTAGCATGATTCCGACATGAAA
TACCCTGCCCGTTTTTTGGGTGCCATGACTCCAACATGCAAAACCCGACC
CGTCTTGTTGGGTACCATGATTCCGACATGGAATACCCGACCCGTCTTGT
TGGGTACCATGATTCCGACATGGAATACCCTACCCGTGTTTTCGGGTACC
ATGATTCCGATATCAAATACCCTACCCTTCCTAACGTGGCGGAGAAAAAC
TCTACACGAGTGCAATGAACGCCGTTTTTGTACTTGTTCGATTATCGTGC
GTTCATTCATGTGTTCATATACTGACACGTAATATATCTTTGTCTTGTTT
TTTTCCGAGCATTATTCCTCCGCGTTTCCTTCGTTCGTGTTTGTTGGATT
TACGCGTTGTGTTATAACTTTGTATTTTTGCGGGTTGTTGTGAAATATTC
TTCTGGAGTGTTTCTCTGGAGTGTTTTCATATGACATGTGCTGCATAATA
TCGAATCCCGCGTTAGGCCGTGTCTTCACGCACTTGTATGTAGATGTGCG
TACATATATCACACGAAGTATAATGTGTCTTATTTTTCAACTCTTCTTTT
TAACATGCATTTGTTGTGCACAACTTGCTCTTTTGCCCGCCGCACTATTC
AACGCTCCGCGTATCAGGCCGCTCATTAGTTTTCCGCGTTGGATTTTAAA
AGGCGCTTTGTATTTCCTTTAGTTCGAAACGTATGTCATGTTTCTGTGTT
ACATGTGATGTTAGCTGTGCTGCATGCGCACGTCGAACATCCCCCGTGTT
TGAGACACTTTTTTTCGTTTCACTGCGCATGTGTATTGTCTTCACATTTA
AAGCCATTCCGATCTCTCCTCAGTACCCTCTTTTGTCCATACTCCTCCGA
TCATGGGCGATTTCCGTAGTCACAGAAAACGTACCCCAAAGTGTATCATA
CGCGGGAAAACCCATCAACCGCGTGTAAAATGACAAGATGCTTGTGCGTA
CTATAAATGGTTTTCGTGAGTTTCAGAGTGAAGTATTAGATTCAGAGGCA
CCCCCATTAATTGGTTTTCCTGACATATGCGGCTGACGTATCTCGGGGAG
TTTTGCGCCGATCCGGTCAACGAACGGCTCAATTATGCGTGTGCGTGTGT
TTGTGTATGTGTTTGTGAAAGTATGTGTGTGCCGTGTGCGTATGTGTGTG
TGGTTTACTTTTTTTCGTTTTTTTCCATACCATGTTGCTTGTGGTGTTGT
GTAAATTTGCACAAGGGCCCCGCCTCAGGTGTTCATTTTGTTGGACGGAT
CCCACGACGATAGCCCCCCCCACGAAAGAGCAGCGTTTTTTTTTTTGTAA
CAAGAGTTCTTGGCTGTCCCTCGCCTCGAGAAAGCACGCTCTGAAGGCAA
AGTGTCGACAAACAGTTGTTTTTTTGTGGTTTAAGCTATTGACAAACGAT
GGAGTCATGGGGATCAGACACAGGCGCTAGACTGCAGGATATAGGGCCTC
TGTCGCCTCAGTCTCGGAATCAGCGATGAACGCTGAAAACAAAAATGGCG
CAGGGGGCAACTCATGCCGCCACCACCACCAACGCCACCGTAGACCGACT
ATTTGATTTCCTTTTTATCCTCAGAAAGGGAAAGGCCCGGCACATGGTGC
TACTCTGCATGTCAAAACGAAGTCTGTATGTTGGGGACCGACGGATGGTG
CTACGATACGTTGTCTGGCGACGGAGGGGTGTGTTGGGTATCGAACACCA
TCGTCATACCGTGTGGCGTGCCACTTCTTCTCTTATTGTGTTCTCGAACG
GTGTGTGGCCGTTGTGTTGTGTGTGTCTCGCATCTTTCAATTGTTTTTTG
CAGGCTGAACACCGACCTTGGGAGCTTTGTTTACCCCAGCATTATGCTGG
AGAGACCTGATGAAGGACTACAGCCTGAGGGCTCTCTTCAAGATTTATCT
GGTACGTATGAAGTGTGTTTACACGGTTGTATTTCGCGCAAAACTGTTCT
CGCACGCGGTACACTTCCACTGTGGTCCGGATTATCCTGCGATAGGAGGC
CCAACCCTGATTTCACCACGAGATTTTTGACAATAAGTAGGTTGGAATAT
ATCTCAGTCAAAGAATATCGCACAGAACAGGTTTTTTGCGACGTGCGGGA
GGCAATGCTGGTACGTGGTCCTGTCTGTCTTTGTCTATCTGTCTGTCTGT
GTCTGTTTGTCTGTTTGTCTGTTTGTCTGTCTGTCTGTCTGTCTGTGTGT
CTGTCTGTCTGTCTGTGTATCTGTCTGTCTGTCTGTCTGCCTATGTGTCC
CGTGGGATACACATTATGTTGGAATACACTTCTCACTATTATTGTCGGCC
TCCCTGTATCGTACGACGTGCCATTCGTAAAAACAGTCAATTTGTGTTAT
TGTTAGTGTAGTGGCACACGCTAGCTGACTGTTCAGCATAACAACATATG
CAACAAAGGTTGTTGATCAAAATGTGCTCTCGTCACAATACACGTTCGCA
AAAATAATAACAGTTATGCGTACGACTCCAGTCAAGGACAAGGTACATCT
GACGAGTACTACCTATTTATGTCTGCGCGTCCCTACAAAGTCCGTTGTGA
CGATTTAGGCTACAGCGCCGTGGACACCGACCTGTGGGTAGCACAGTAAT
ACATTGATAGACGGAACTGAAAGACAAATTAAGAACAGGTGAACGCGTCC
TTTTTTGGTGGGGTTTCGAAAGGATCAGGCGGCAGCAGGAAGGGTTCGGC
GAGGAGCAGGAGCGGGAACAGGCTGCAAAAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1239:1090..7670-

>mRNA_P-littoralis_Contig1239.1.1 ID=mRNA_P-littoralis_Contig1239.1.1|Name=mRNA_P-littoralis_Contig1239.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=288bp|location=Sequence derived from alignment at P-littoralis_Contig1239:1090..7670- (Pylaiella littoralis U1_48)
GGAAGGCATCGACGTCGGGCCAAGCATGACTCTCGGGGGGACGGGTATTC
GAGGGGCTCCGCCATGGATACGCTGACGACGACGAGCGTGTCGACGGTTA
CAAGAGGCGTGGCACTGCATTGGAAACCCAGGCTGAACACCGACCTTGGG
AGCTTTGTTTACCCCAGCATTATGCTGGAGAGACCTGATGAAGGACTACA
GCCTGAGGGCTCTCTTCAAGATTTATCTGGATCAGGCGGCAGCAGGAAGG
GTTCGGCGAGGAGCAGGAGCGGGAACAGGCTGCAAAAA
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