mRNA_P-littoralis_Contig1238.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1238.5.1
Unique NamemRNA_P-littoralis_Contig1238.5.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1238.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1238contigP-littoralis_Contig1238:34111..35843 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size960
Hectar predicted targeting categorymitochondrion
Exons2
Cds size516
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789539.7951353-UTR-P-littoralis_Contig1238:34110..341371680789539.7951353-UTR-P-littoralis_Contig1238:34110..34137Pylaiella littoralis U1_48UTRP-littoralis_Contig1238 34111..34137 +
1680789539.8347406-UTR-P-littoralis_Contig1238:35426..358431680789539.8347406-UTR-P-littoralis_Contig1238:35426..35843Pylaiella littoralis U1_48UTRP-littoralis_Contig1238 35427..35843 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789539.8098018-CDS-P-littoralis_Contig1238:34137..344021680789539.8098018-CDS-P-littoralis_Contig1238:34137..34402Pylaiella littoralis U1_48CDSP-littoralis_Contig1238 34138..34402 +
1680789539.8225114-CDS-P-littoralis_Contig1238:35175..354261680789539.8225114-CDS-P-littoralis_Contig1238:35175..35426Pylaiella littoralis U1_48CDSP-littoralis_Contig1238 35176..35426 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1238.5.1prot_P-littoralis_Contig1238.5.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1238 34138..35426 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1238.5.1

>prot_P-littoralis_Contig1238.5.1 ID=prot_P-littoralis_Contig1238.5.1|Name=mRNA_P-littoralis_Contig1238.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=172bp
MIKQRSTNTAVVYSARFRATRLSSKQKPPVLQHLLLAEYPHTSFFPSSRI
HGSCTMHDEQKHEGVAGAGAAKQQQQQQRLYQRHRGRAATCLCGNASHGD
RPPSFCSQDTPATAKDSTPAEPQHQQSGKKGWSGMVSRPKRVKPILAHAP
TRGATAPKTTPPIAAVSVTMT*
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mRNA from alignment at P-littoralis_Contig1238:34111..35843+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1238.5.1 ID=mRNA_P-littoralis_Contig1238.5.1|Name=mRNA_P-littoralis_Contig1238.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1733bp|location=Sequence derived from alignment at P-littoralis_Contig1238:34111..35843+ (Pylaiella littoralis U1_48)
AGACATCCGGTACCCTGTAAGATATGAATGATCAAACAGAGGTCGACAAA
TACAGCAGTTGTATATTCGGCAAGATTCCGAGCGACCCGCCTCAGCAGCA
AGCAAAAGCCTCCGGTCCTCCAGCACCTCCTTCTCGCCGAGTATCCACAC
ACAAGTTTTTTTCCAAGTAGTCGTATCCACGGCAGCTGCACGATGCACGA
CGAGCAGAAGCACGAAGGAGTAGCAGGAGCAGGAGCAGCAAAGCAGCAGC
AGCAGCAGCAGCGACTATACCAACGGCATCGCGGACGAGCTGGTAAGGGA
GGGTTTGCTATTACGCAGAGAGTGGGAGGCCATCGCAACGGAGTGGGCTT
TGTGTGGATGACGGCTGTAGTGAGAAACAAACCGACCTACCCAAAGACTT
GATTTTTTCAGGCGAAGAAAACCAAGACGTCATAGAGGCGCTTGCCCTTT
TTCGAGCGTCAGTAAAACTCAACTCTGTCGACGGTTGCCCTGATGAGGGT
TGATCAACGCGCTATCAAGTATTTACCACTCCTTTTAAGAGATGCCGCCT
ATGACAGCCTCCTGCAGCTTACAACAGGTACTCTCGAGTGGAGATCAGAG
AGCGTCATGTCACAAACCGGGACTCAGGACAGAACACTCGTCCAGTTTCG
CCAAACACTTCGGCAGAGTGGTGTCAAGCATTCAGTTTTCTCTTTTCAGC
ACCGAATCGTATTTCAGTGTTGGCCCGCGAAATTGCAACCATCAAGCAAA
CGGAGTCACAATCAGTAGACATGTACGCTCTGAAGGTCATGCAAGCCGGC
ACACGATTACTTGCTGAAGCCACCCGTTCTGCTCCGCCCAACACCAGCCC
TCGCGGACATGCTTGGGATGGTTTTCTCACGGCAACTTTCGAAAATGGTT
TGAAACCGAATGTTAGGTTAGAGTGTAATTGTCCACGGGCTAGACTGCGG
CGGTAGTGAGCTAATGTGAGAATCAACAACAACAAATAATTTACGGGGAA
CACACAACCTCACCCCGGACACGATCCCGACTACTTACGCATCGGCTGTC
TCACACAAACCGCAGCTACGTGCCTCTGTGGCAACGCAAGCCACGGAGAT
CGCCCACCTAGCTTCTGCAGTCAAGACACTCCAGCAACAGCAAAAGACAG
CACGCCCGCGGAGCCGCAGCACCAACAAAGCGGGAAGAAAGGATGGAGCG
GGATGGTAAGCAGGCCAAAACGGGTAAAACCAATTTTGGCCCATGCACCT
ACCCGGGGTGCCACCGCCCCGAAAACCACTCCACCGATCGCTGCCGTGTC
CGTAACGATGACATGAGCAGGGGTTATCTGCGCCAACCTACGAAGAAGTC
GGATGAATGATGGGGCCCGGTTTGGGTTCCCTCGCTCAAAGGGATGAGTA
GCAGTACCACGACACCAGTAGAGCCAGCAGCCGGTAGTTCAGCAGCAACA
GTTGCGAAAACACAACCAGCAGAAGTTTCAACTAGTAGTCGGAAAAAAGT
GAGGTTTAATTAACGCCGTTAAAGTAGCGTTGACCCTTGGGCAGGCAGTT
TCCTAGGAACATCGAAAAACAACCCGGTCACTAGCATGAACCAGGTGGAA
AGAAAAAATGTTGACAAGCAGAGTAGCAGTCGAACAGCGAGACGTATTCG
TAAGTCAAGTTGCTTGACAAGTAGCTCCGCAAGCTCAACATGTTGTATCC
CGAATGATTGATTGTTTCTAATCAAGATAACGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1238:34111..35843+

>mRNA_P-littoralis_Contig1238.5.1 ID=mRNA_P-littoralis_Contig1238.5.1|Name=mRNA_P-littoralis_Contig1238.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=516bp|location=Sequence derived from alignment at P-littoralis_Contig1238:34111..35843+ (Pylaiella littoralis U1_48)
ATGATCAAACAGAGGTCGACAAATACAGCAGTTGTATATTCGGCAAGATT
CCGAGCGACCCGCCTCAGCAGCAAGCAAAAGCCTCCGGTCCTCCAGCACC
TCCTTCTCGCCGAGTATCCACACACAAGTTTTTTTCCAAGTAGTCGTATC
CACGGCAGCTGCACGATGCACGACGAGCAGAAGCACGAAGGAGTAGCAGG
AGCAGGAGCAGCAAAGCAGCAGCAGCAGCAGCAGCGACTATACCAACGGC
ATCGCGGACGAGCTGCTACGTGCCTCTGTGGCAACGCAAGCCACGGAGAT
CGCCCACCTAGCTTCTGCAGTCAAGACACTCCAGCAACAGCAAAAGACAG
CACGCCCGCGGAGCCGCAGCACCAACAAAGCGGGAAGAAAGGATGGAGCG
GGATGGTAAGCAGGCCAAAACGGGTAAAACCAATTTTGGCCCATGCACCT
ACCCGGGGTGCCACCGCCCCGAAAACCACTCCACCGATCGCTGCCGTGTC
CGTAACGATGACATGA
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