mRNA_P-littoralis_Contig1237.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1237.1.1
Unique NamemRNA_P-littoralis_Contig1237.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1237.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1237contigP-littoralis_Contig1237:13166..13694 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size477
Hectar predicted targeting categoryother localisation
Exons2
Cds size267
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789539.7352548-UTR-P-littoralis_Contig1237:13165..132111680789539.7352548-UTR-P-littoralis_Contig1237:13165..13211Pylaiella littoralis U1_48UTRP-littoralis_Contig1237 13166..13211 -
1680789539.766218-UTR-P-littoralis_Contig1237:13530..136941680789539.766218-UTR-P-littoralis_Contig1237:13530..13694Pylaiella littoralis U1_48UTRP-littoralis_Contig1237 13531..13694 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789539.748139-CDS-P-littoralis_Contig1237:13211..133421680789539.748139-CDS-P-littoralis_Contig1237:13211..13342Pylaiella littoralis U1_48CDSP-littoralis_Contig1237 13212..13342 -
1680789539.7560763-CDS-P-littoralis_Contig1237:13394..135301680789539.7560763-CDS-P-littoralis_Contig1237:13394..13530Pylaiella littoralis U1_48CDSP-littoralis_Contig1237 13395..13530 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1237.1.1prot_P-littoralis_Contig1237.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1237 13212..13530 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1237.1.1

>prot_P-littoralis_Contig1237.1.1 ID=prot_P-littoralis_Contig1237.1.1|Name=mRNA_P-littoralis_Contig1237.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=89bp
MVAPWLAISQHRHFRVAFDIAFRLTALFGSVGARDGIADFDLEFFGDFEG
RSLDLGSISKIIGDHRDLDLFTYFNGPDFVILQYRPAS*
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mRNA from alignment at P-littoralis_Contig1237:13166..13694-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1237.1.1 ID=mRNA_P-littoralis_Contig1237.1.1|Name=mRNA_P-littoralis_Contig1237.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=529bp|location=Sequence derived from alignment at P-littoralis_Contig1237:13166..13694- (Pylaiella littoralis U1_48)
TTTTTATGTTGCATGCTTTAAATGTAGTTATTCAGCGACATTAAGAAAGG
CAACGCCGACGAAACTCGTCGCGATGGTCTATATAGTAAAGGCAATGGGA
GAGGCCAGTTGGGAATCGCGCAAGTGCTTTCCCGGGACAGCAATAAGTAA
CAAGATATGTGGTGATGGTGGCCCCTTGGTTGGCTATATCTCAACATCGA
CACTTTCGTGTGGCGTTTGATATCGCTTTCAGACTTACTGCCCTGTTTGG
AAGTGTTGGAGCTCGTGATGGAATCGCCGATTTCGATCTCGAGTTTTTCG
GCGACGATTCGGCTACTACATACAGCAGTAGATCGCGACAAAGAAAACGA
AGGAGATTTTGAAGGGCGATCTCTCGATCTGGGATCGATATCGAAGATCA
TCGGCGATCACCGCGATCTCGATCTCTTCACCTACTTCAACGGCCCCGAT
TTTGTTATTTTACAGTACCGGCCCGCCAGTTAAAGGGGCGTTTTAATCAT
GAGCTTTCATTCGCAGGATTCGTTGCGCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1237:13166..13694-

>mRNA_P-littoralis_Contig1237.1.1 ID=mRNA_P-littoralis_Contig1237.1.1|Name=mRNA_P-littoralis_Contig1237.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=267bp|location=Sequence derived from alignment at P-littoralis_Contig1237:13166..13694- (Pylaiella littoralis U1_48)
ATGGTGGCCCCTTGGTTGGCTATATCTCAACATCGACACTTTCGTGTGGC
GTTTGATATCGCTTTCAGACTTACTGCCCTGTTTGGAAGTGTTGGAGCTC
GTGATGGAATCGCCGATTTCGATCTCGAGTTTTTCGGAGATTTTGAAGGG
CGATCTCTCGATCTGGGATCGATATCGAAGATCATCGGCGATCACCGCGA
TCTCGATCTCTTCACCTACTTCAACGGCCCCGATTTTGTTATTTTACAGT
ACCGGCCCGCCAGTTAA
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