mRNA_P-littoralis_Contig1233.13.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1233.13.1
Unique NamemRNA_P-littoralis_Contig1233.13.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1233.13.1 vs. uniprot
Match: A0A6H5JWT7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWT7_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 5.280e-11
Identity = 46/132 (34.85%), Postives = 71/132 (53.79%), Query Frame = 1 
Query:  346 VTGDQIFQRLQAAGVTAMAKASLAGILQWDVAPEVASRLGAGSIATTRSNRGSKAEGTVRSRIANILTPFAYSYIGTAKVSESGGQAPSPATNPFVAVAKHVWPGADTSPEWQGMIFLPATLRTSTLIKSRI 741
            ++G  +F  L  A V   AKA+L G+L   ++P+VA+ LG  S   T    G K   T R   AN+++ +AY ++G A++  SGG   S  TNPF+A+  H WPGA  +      IF+ A +   + + + I
Sbjct:   95 MSGQNLFDTLDTALVPKAAKAALLGLLLQLISPDVATMLGGESSKKTTVGPGEK---TARGVAANVMSVYAYGFVGPARMQFSGGGPTSALTNPFLALGSHAWPGARQNLNTFPAIFVKAVVSARSELHAEI 223
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BLAST of mRNA_P-littoralis_Contig1233.13.1 vs. uniprot
Match: D8LH35_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH35_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 2.260e-8
Identity = 43/132 (32.58%), Postives = 69/132 (52.27%), Query Frame = 1 
Query:  346 VTGDQIFQRLQAAGVTAMAKASLAGILQWDVAPEVASRLGAGSIATTRSNRGSKAEGTVRSRIANILTPFAYSYIGTAKVSESGGQAPSPATNPFVAVAKHVWPGADTSPEWQGMIFLPATLRTSTLIKSRI 741
            ++G  +F  L  A V   AKA+L G+L   ++P+VA+ LG  S   T        E T R   AN+++ +AY ++G A++  SGG   +  TNPF+A+  H WP A  +      IF+ A +   + + + I
Sbjct:    3 MSGQNLFDALDTALVPKAAKAALLGLLLQLISPDVANMLGGESSKKTVG----PGEKTARGVAANVMSVYAYGFVGPARMQFSGGGPTNALTNPFLALGPHAWPRARQNLNTFPAIFVKAVVSARSELHAEI 130
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BLAST of mRNA_P-littoralis_Contig1233.13.1 vs. uniprot
Match: D7G2D5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2D5_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 2.630e-8
Identity = 40/106 (37.74%), Postives = 62/106 (58.49%), Query Frame = 1 
Query:  346 VTGDQIFQRLQAAGVTAMAKASLAGILQWDVAPEVASRLGAGSIATTRSNRGSKAEGTVRSRIANILTPFAYSYIGTAKVSESGGQAPSPATNPFVAVAKHVWPGA 663
            ++G  +F  L  A V   AK +L G+L   ++P+VA+ LG  S   ++   GS  E T R   AN+++ +AY ++G A++  SGG   +  TNPF+A+  H WPGA
Sbjct:  278 MSGRNLFDALDTALVPKAAKTALLGLLLQLISPDVANMLGGES---SKKTVGSD-EKTARGVAANVMSVYAYGFVGPARMKFSGGGPTNALTNPFLALGSHAWPGA 379
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BLAST of mRNA_P-littoralis_Contig1233.13.1 vs. uniprot
Match: A0A6H5JR88_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR88_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 1.240e-5
Identity = 41/115 (35.65%), Postives = 62/115 (53.91%), Query Frame = 1 
Query:  346 VTGDQIFQRLQAAGVTAMAKASLAGILQWDVAPEVASRLGAGSIATTRSNRGSKAEGTVRSRIANILTPFAYSYIGTAKVSESGGQAPSPATNPFVAVAKHVWPGA-DTSPEWQG 687
            ++G  I+Q + AAG++ M +A+L GIL   VAP    R   G+    R  RG +A   +   +A + + F+Y++IG  K   SGGQ      N F+A A  V+ GA +  P+W G
Sbjct:  247 MSGQVIYQAINAAGMSQMERAALLGILMSTVAPIHQQRPVVGAKPARRPVRGERASNGI---VAALFSVFSYAFIGQGKTRFSGGQPCHEKNNVFLAAAALVYVGAQEGDPDWVG 358
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1233.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JWT7_9PHAE5.280e-1134.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LH35_ECTSI2.260e-832.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G2D5_ECTSI2.630e-837.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JR88_9PHAE1.240e-535.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1233contigP-littoralis_Contig1233:44373..46094 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1116
Hectar predicted targeting categoryother localisation
Exons2
Cds size351
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789538.7978542-UTR-P-littoralis_Contig1233:44372..447681680789538.7978542-UTR-P-littoralis_Contig1233:44372..44768Pylaiella littoralis U1_48UTRP-littoralis_Contig1233 44373..44768 +
1680789538.8320796-UTR-P-littoralis_Contig1233:45725..460941680789538.8320796-UTR-P-littoralis_Contig1233:45725..46094Pylaiella littoralis U1_48UTRP-littoralis_Contig1233 45726..46094 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789538.8073766-CDS-P-littoralis_Contig1233:44768..448221680789538.8073766-CDS-P-littoralis_Contig1233:44768..44822Pylaiella littoralis U1_48CDSP-littoralis_Contig1233 44769..44822 +
1680789538.8163517-CDS-P-littoralis_Contig1233:45428..457251680789538.8163517-CDS-P-littoralis_Contig1233:45428..45725Pylaiella littoralis U1_48CDSP-littoralis_Contig1233 45429..45725 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1233.13.1prot_P-littoralis_Contig1233.13.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1233 44769..45725 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1233.13.1

>prot_P-littoralis_Contig1233.13.1 ID=prot_P-littoralis_Contig1233.13.1|Name=mRNA_P-littoralis_Contig1233.13.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=117bp
MAKASLAGILQWDVAPEVASRLGAGSIATTRSNRGSKAEGTVRSRIANIL
TPFAYSYIGTAKVSESGGQAPSPATNPFVAVAKHVWPGADTSPEWQGMIF
LPATLRTSTLIKSRIC*
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mRNA from alignment at P-littoralis_Contig1233:44373..46094+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1233.13.1 ID=mRNA_P-littoralis_Contig1233.13.1|Name=mRNA_P-littoralis_Contig1233.13.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1722bp|location=Sequence derived from alignment at P-littoralis_Contig1233:44373..46094+ (Pylaiella littoralis U1_48)
AGGCTCGGCTGGCGGTCAAACGTTCATTCGTCGCCATTCTGAAGGACGCG
TGGCCGCGACGACTGCATCGAATgGGGGGAGGGTATCCTCCACCGGAGGA
GGCTCCTCTGGTGGTGGGGGGTCGTCGTCGTCGTCCTCAGCATCTCTCTC
AGCTCGTCAAGACGGTGGGGGCCTACTGCATCCAACGGGGGAGGTGTCTC
GTCGACCAGGGGTGGGCTTGGAGGCCGACGTGGAGCCACTACCTCGTTTA
CGCGGCTGGGGGGGGCTTCGATGCGGGCCGCTGCTGACACCGTTACGCGG
CTGCGTTAGGCTTCGGTGCGGGCGGCTGCAGAGACCCCCGAGGCAGTGAC
CGGCGACCAGATTTTTCAACGGTTGCAGGCGGCGGGGGTAACGGCAATGG
CGAAGGCCTCTCTCGCGGGGATTCTCCAATGGGACGTCGCTCCCGAGGTG
GTGAGTATCTGAATGCATTGTATACTGATGGCACAAAGCAGTTGCGTCCC
GCATTCCGTCTCGGGGCCCATTGCCCACCACCCCTCGTCCTTTATTGAGA
AAATATAGTAGTAGTAGTGGTGGTGGTGGTGATCGCGCATGACTCTTGAC
GTATTGTAACGGTAGCGAAGGAGAAGTATCACAGCAACAGTATGTTGCCG
ATAGCCTGCGTACAGCCACGTGTGGTGCAGAAGCCGCGCAGCAGGGCGTG
TGTTGTTGGAGATGCCTGGCGGTCTTTGAAACGCACAACAACTAAGGCAT
GCACCTCATGTTTTTCGCGACTGAGCTTTAACGTGCGCCTTCGACAATAT
GTAACTCGACTAGACAGTCTGTTGCCAAGGTCGCGACAGGGGCGCCGGGC
CGTTTTGTAGTGTTTTGTCTCCCACGGCGCAAAGAGCTTTAGTTGCTAAT
ATTTGTGGCAACAAAATATAAAGAGTGTCTCTCTCCGCGCTCCGAGTAAA
TATGAGCCAATTTTAATTTACTCTGTTGCCGAAGAGACGTACATGTCAAC
ATGTTTCTGATTTAGTGCTACCACCCTTTTTCTTGACTGCACTGACGATA
CTTCAGGCATCCCGCTTGGGCGCGGGCTCCATCGCAACAACCAGGTCGAA
CAGGGGCAGCAAGGCCGAGGGAACGGTGCGAAGCAGGATCGCCAACATCC
TGACCCCGTTCGCTTATAGCTATATCGGCACCGCCAAGGTCTCAGAGAGC
GGGGGACAGGCCCCTTCACCGGCGACGAACCCCTTCGTGGCTGTAGCCAA
ACACGTCTGGCCTGGCGCCGACACATCGCCAGAGTGGCAGGGTATGATTT
TCCTTCCAGCGACGTTGCGAACTTCGACTCTGATAAAGTCAAGAATATGT
TGAAGAGGTTTGCGTCAAAAGTACGCTCTCATGGCCATGGCACTCGATGA
TTTGACCTTGTTCGGGTTGTTTATTACCCTCATTCCCCGGCAGGGACATA
ATGTTATGATTTCTTGCGGTTTCGTTGTCAACAGTGTACGCCCATGGCCG
TTGCAACCGAGTGCCACTCTCTGTATGTACTATTTCCTCGTGTCGCCTCG
TCGGGGGCGAAGTTTGATATCATATGTTTTCCATATTGTTGTGAACAGTA
CGCTGATGGCCATCTCAACCAATCGTCTCTCCTTGCGCACCTTGTTCCCA
CTGCTCCCCCGGCAGCGGCTTTCACGGCGGTGGTGTGCTCCTGCCGGTCT
GCCTGGCACGCGAAGATCCCTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1233:44373..46094+

>mRNA_P-littoralis_Contig1233.13.1 ID=mRNA_P-littoralis_Contig1233.13.1|Name=mRNA_P-littoralis_Contig1233.13.1|organism=Pylaiella littoralis U1_48|type=CDS|length=351bp|location=Sequence derived from alignment at P-littoralis_Contig1233:44373..46094+ (Pylaiella littoralis U1_48)
ATGGCGAAGGCCTCTCTCGCGGGGATTCTCCAATGGGACGTCGCTCCCGA
GGTGGCATCCCGCTTGGGCGCGGGCTCCATCGCAACAACCAGGTCGAACA
GGGGCAGCAAGGCCGAGGGAACGGTGCGAAGCAGGATCGCCAACATCCTG
ACCCCGTTCGCTTATAGCTATATCGGCACCGCCAAGGTCTCAGAGAGCGG
GGGACAGGCCCCTTCACCGGCGACGAACCCCTTCGTGGCTGTAGCCAAAC
ACGTCTGGCCTGGCGCCGACACATCGCCAGAGTGGCAGGGTATGATTTTC
CTTCCAGCGACGTTGCGAACTTCGACTCTGATAAAGTCAAGAATATGTTG
A
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