mRNA_P-littoralis_Contig1233.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1233.5.1
Unique NamemRNA_P-littoralis_Contig1233.5.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1233.5.1 vs. uniprot
Match: A0A6H5JTS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTS3_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 6.130e-6
Identity = 25/36 (69.44%), Postives = 30/36 (83.33%), Query Frame = 2 
Query:    2 RIPLLCEYEHFIGGVNRLRGMKDTSRLTPAEVNHRF 109
            R+ LLCEY+HFI G+ RLRGMKDTS LT AE+N R+
Sbjct: 1442 RVLLLCEYDHFIEGLKRLRGMKDTSCLTAAEINQRY 1477
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BLAST of mRNA_P-littoralis_Contig1233.5.1 vs. uniprot
Match: A0A6H5JCS9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCS9_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 8.870e-5
Identity = 23/36 (63.89%), Postives = 29/36 (80.56%), Query Frame = 2 
Query:    2 RIPLLCEYEHFIGGVNRLRGMKDTSRLTPAEVNHRF 109
            R+ LLCEY+HFI G+ +LR MKDTS LT AE+N R+
Sbjct: 1701 RVLLLCEYDHFIEGLKKLRSMKDTSCLTAAEINQRY 1736
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1233.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JTS3_9PHAE6.130e-669.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCS9_9PHAE8.870e-563.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1233contigP-littoralis_Contig1233:25043..25777 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size735
Hectar predicted targeting categoryother localisation
Exons1
Cds size423
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789538.4881244-UTR-P-littoralis_Contig1233:25042..253391680789538.4881244-UTR-P-littoralis_Contig1233:25042..25339Pylaiella littoralis U1_48UTRP-littoralis_Contig1233 25043..25339 -
1680789538.5132358-UTR-P-littoralis_Contig1233:25762..257771680789538.5132358-UTR-P-littoralis_Contig1233:25762..25777Pylaiella littoralis U1_48UTRP-littoralis_Contig1233 25763..25777 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789538.5039093-CDS-P-littoralis_Contig1233:25339..257621680789538.5039093-CDS-P-littoralis_Contig1233:25339..25762Pylaiella littoralis U1_48CDSP-littoralis_Contig1233 25340..25762 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1233.5.1prot_P-littoralis_Contig1233.5.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1233 25340..25762 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1233.5.1

>prot_P-littoralis_Contig1233.5.1 ID=prot_P-littoralis_Contig1233.5.1|Name=mRNA_P-littoralis_Contig1233.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=141bp
MRIRTLHRGCQSVARNERYIPPNARRGKPSILVNLGCWNCLCLGCGVTSP
TYYCLLVFPHESVNLYVRKLLPEEVGFRVFSDLKTLHVVISHRKFTGHEI
DLGEWLKIARGGPSSPALNRKCSVVKVEGINDDHFMQWTV*
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mRNA from alignment at P-littoralis_Contig1233:25043..25777-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1233.5.1 ID=mRNA_P-littoralis_Contig1233.5.1|Name=mRNA_P-littoralis_Contig1233.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=735bp|location=Sequence derived from alignment at P-littoralis_Contig1233:25043..25777- (Pylaiella littoralis U1_48)
CCGGATACCATTATTATGCGAATACGAACACTTCATAGGGGGTGTCAATC
GGTTGCGCGGAATGAAAGATACATCCCGCCTAACGCCCGCCGAGGTAAAC
CATCGATTTTAGTAAACCTTGGGTGTTGGAACTGTCTTTGTCTCGGTTGC
GGAGTAACCTCACCGACTTATTATTGTCTGTTAGTTTTCCCCCATGAATC
AGTAAATTTGTACGTCAGAAAACTGCTTCCTGAAGAAGTCGGATTCCGTG
TATTCAGCGATTTGAAGACGCTCCACGTCGTGATTAGTCACAGAAAATTC
ACAGGGCACGAGATTGATTTGGGTGAATGGCTAAAAATTGCACGCGGTGG
TCCGAGTTCACCGGCCTTGAACCGTAAGTGCTCGGTTGTCAAAGTAGAAG
GGATCAACGACGATCATTTCATGCAGTGGACGGTATGACTTCAATCCACT
AACATCTTCGTCGTCAATGTCCTTCCTTTCTCAGTGACTGCGCAAAGACT
GTGACTCGTTGGATTTGTGTTGTGCGCGCACACACACACTAAATTTTCAC
GCAATGTTCACCAGAATTTCATTTTTCACACAGTTTTCACGCAATATTCA
ACGAATTTCCAATTTTCGCTAAATTTTCTCACCACCACCACCGATATCTT
GTGTATGAAACAAAATGTTCAAACACGTCCTATTGACTGAGACTACAACC
CCGAGAGGAACACCTTATTTTCTCTACTTTGATCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1233:25043..25777-

>mRNA_P-littoralis_Contig1233.5.1 ID=mRNA_P-littoralis_Contig1233.5.1|Name=mRNA_P-littoralis_Contig1233.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=423bp|location=Sequence derived from alignment at P-littoralis_Contig1233:25043..25777- (Pylaiella littoralis U1_48)
ATGCGAATACGAACACTTCATAGGGGGTGTCAATCGGTTGCGCGGAATGA
AAGATACATCCCGCCTAACGCCCGCCGAGGTAAACCATCGATTTTAGTAA
ACCTTGGGTGTTGGAACTGTCTTTGTCTCGGTTGCGGAGTAACCTCACCG
ACTTATTATTGTCTGTTAGTTTTCCCCCATGAATCAGTAAATTTGTACGT
CAGAAAACTGCTTCCTGAAGAAGTCGGATTCCGTGTATTCAGCGATTTGA
AGACGCTCCACGTCGTGATTAGTCACAGAAAATTCACAGGGCACGAGATT
GATTTGGGTGAATGGCTAAAAATTGCACGCGGTGGTCCGAGTTCACCGGC
CTTGAACCGTAAGTGCTCGGTTGTCAAAGTAGAAGGGATCAACGACGATC
ATTTCATGCAGTGGACGGTATGA
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