prot_P-littoralis_Contig1232.8.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig1232.8.1
Unique Nameprot_P-littoralis_Contig1232.8.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length261
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1232.8.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 1..108
e-value: 3.6E-25
score: 91.1
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 123..261
e-value: 4.4E-34
score: 120.3
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 199..229
e-value: 6.7E-6
score: 26.1
coord: 29..88
e-value: 2.6E-9
score: 37.0
coord: 135..194
e-value: 2.6E-8
score: 33.8
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 44..76
e-value: 8.4E-4
score: 17.4
coord: 219..252
e-value: 4.2E-5
score: 21.4
coord: 184..215
e-value: 2.4E-6
score: 25.4
coord: 115..148
e-value: 0.0013
score: 16.7
coord: 9..42
e-value: 1.2E-7
score: 29.4
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 181..215
score: 11.520384
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 6..40
score: 10.435215
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 216..250
score: 9.996763
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 112..146
score: 9.108898
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 41..75
score: 10.64348
NoneNo IPR availablePANTHERPTHR47942TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATEDcoord: 3..193
coord: 129..257

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1232contigP-littoralis_Contig1232:13830..14612 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1232.8.1mRNA_P-littoralis_Contig1232.8.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig1232 13830..14612 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig1232.8.1 ID=prot_P-littoralis_Contig1232.8.1|Name=mRNA_P-littoralis_Contig1232.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=261bp
GGVSPERRTYNAAITCFGRHHEWESAVGVLRDMETDGLSPDVFSYRYAVD
ACRKSKQWEGALGLLREMQEIGVTPDLLTFNAVIAACADGVQFERSVLLL
LEMREAPNVRADRRTYNAVLRVCGACLQWKQAVLILRDMVAVDVAPDVAS
YTFTIMACEKLEWELALELLREMQEVGVAPDRQTYTVVISALGNGLQCEQ
ALEIFEEMKRAGISPKESTYNAAIAACGNGLQHESALALLREMTDAGIRP
TVMSYNSTFLA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat