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Homology
BLAST of mRNA_P-littoralis_Contig1232.13.1 vs. uniprot
Match: D8LB00_ECTSI (PPR_long domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB00_ECTSI) HSP 1 Score: 58.2 bits (139), Expect = 2.320e-5 Identity = 29/38 (76.32%), Postives = 32/38 (84.21%), Query Frame = 0
Query: 179 TAGLPVKAPSYTAAIKACGDAGESRTAVALLREMQATL 216
+ GLP+KA SYT AIKACGDAGE + AVALLREMQA L
Sbjct: 523 SVGLPIKAQSYTVAIKACGDAGEGKPAVALLREMQAEL 560
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 368..388 |
| None | No IPR available | PANTHER | PTHR47942 | TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED | coord: 188..416
coord: 7..155
coord: 113..248 |
| IPR002885 | Pentatricopeptide repeat | PFAM | PF13041 | PPR_2 | coord: 358..401
e-value: 4.3E-8
score: 33.2
coord: 220..269
e-value: 2.0E-10
score: 40.7 |
| IPR002885 | Pentatricopeptide repeat | TIGRFAM | TIGR00756 | TIGR00756 | coord: 52..78
e-value: 7.8E-4
score: 17.5
coord: 116..151
e-value: 2.2E-6
score: 25.5
coord: 294..326
e-value: 9.8E-6
score: 23.4
coord: 188..222
e-value: 2.6E-4
score: 18.9
coord: 370..394
e-value: 0.0011
score: 17.0
coord: 223..256
e-value: 0.0013
score: 16.7
coord: 83..114
e-value: 2.2E-4
score: 19.2
coord: 259..284
e-value: 2.0E-5
score: 22.5 |
| IPR002885 | Pentatricopeptide repeat | PFAM | PF01535 | PPR | coord: 116..143
e-value: 4.3E-4
score: 20.3
coord: 294..323
e-value: 1.5E-4
score: 21.8
coord: 188..213
e-value: 0.028
score: 14.6 |
| IPR002885 | Pentatricopeptide repeat | PFAM | PF13812 | PPR_3 | coord: 31..92
e-value: 2.1E-7
score: 30.9 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 256..290
score: 10.150222 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 359..392
score: 9.448698 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 221..255
score: 9.788499 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 114..149
score: 8.70333 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 291..325
score: 9.920034 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 44..78
score: 10.183105 |
| IPR011990 | Tetratricopeptide-like helical domain superfamily | GENE3D | 1.25.40.10 | Tetratricopeptide repeat domain | coord: 215..286
e-value: 9.3E-16
score: 59.9 |
| IPR011990 | Tetratricopeptide-like helical domain superfamily | GENE3D | 1.25.40.10 | Tetratricopeptide repeat domain | coord: 93..214
e-value: 5.8E-27
score: 96.9 |
| IPR011990 | Tetratricopeptide-like helical domain superfamily | GENE3D | 1.25.40.10 | Tetratricopeptide repeat domain | coord: 1..92
e-value: 1.5E-15
score: 59.0
coord: 293..412
e-value: 3.9E-25
score: 90.2 |
Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >prot_P-littoralis_Contig1232.13.1 ID=prot_P-littoralis_Contig1232.13.1|Name=mRNA_P-littoralis_Contig1232.13.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=435bp
MESLELRPNAQTYLAAIRAAGNRDKGEQAVSLLRAMADSGVTREAKCYAL
TIKACAGEGQWVRALEILREMKLKGVEPIVMGYNACIAACGDGNQWEKAV
ALVREMPTARVTPTVVSYGCAIDACGQSRQPQAALELLREMQQEAGINPD
AICYNKCIIAQGRGQHWQVAVDLLREMPTAGLPVKAPSYTAAIKACGDAG
ESRTAVALLREMQATLGVPPNVISYTATIAACGKGDHWGQAVRLLREMAT
MKVSPNDRTYTAVITACANSGQWQHALSLLREMPGAGATQTITCYTAAIK
ACGNGGEWEKAVELFRELPGAGIPADVMAYDACVKACGDSRAVDQAIILL
REMATMEPNVFTYNSALMACADGERERALELLEEMSRKGVVPDATTFKSA
LVACGEGSFGEVESLLGLSGGWDNGGDGGGDGPL* back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002885 | Pentatricopeptide_repeat |
| IPR011990 | TPR-like_helical_dom_sf |
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