mRNA_P-littoralis_Contig1232.13.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1232.13.1
Unique NamemRNA_P-littoralis_Contig1232.13.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1232.13.1 vs. uniprot
Match: D8LB00_ECTSI (PPR_long domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB00_ECTSI)

HSP 1 Score: 145 bits (366), Expect = 3.610e-32
Identity = 156/294 (53.06%), Postives = 173/294 (58.84%), Query Frame = 3 
Query:  171 MTFRRAVAVTAKGLTQVAGRGRLSTNPPVAAAAATADAATDFPAACAADVXXXXXXXXXXXXXXXXXXXXRAPFAAAQQHSGAAAEAGAAVETPQNSSNDWDMPILGVRSAGGXXXXXXXXXXXXXXXXXXXXXXXQSAQQFEGMESSAPHAAVEGGRFNFEYKWQQRPAEAPSAGAPL----HPWAAARLRRDSKRKTPRRGAPDFGRRRGPIMKRLQRAGMLRDCDEAERTLQDALERHPDIMDAVMCNTALIAFAHCGRWQIVLEVMQQMRAAGIPPDAATYSVAIKACGK 1040
            MTFRRA AVTAKGL Q A RGR +  PPVAA   TA   TD  A  A        XXXXXXXXXXXXXXX    A A+               P + S+ W+ PI    SAGG     XXXXXXXXXXXXXXXXXX     F GM            RF+FE   +   A             HPW AARLRR+S R    R  PDFGRRRGP M+RLQ+AGM RDCDEAER L+ ALE  P ++D VMCN  L  FA  GRWQ+VLEVM+QMR AG+ PDA TY+ AIKACGK
Sbjct:    1 MTFRRAAAVTAKGLAQ-ASRGRFANPPPVAA---TAPPVTDLLATGANTSARISTXXXXXXXXXXXXXXXXXXPAEAK---------------PPHPSSVWETPISN-DSAGGLNGDGXXXXXXXXXXXXXXXXXXXXXX-FGGMRR----------RFDFETGAKNLRAXXXXXXXXXXXXXHPWVAARLRRESMRAKKSR-TPDFGRRRGPFMRRLQQAGMRRDCDEAERVLRQALEC-PGVVDTVMCNAVLNTFAADGRWQVVLEVMRQMREAGLTPDALTYTNAIKACGK 261
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1232.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LB00_ECTSI3.610e-3253.06PPR_long domain-containing protein n=2 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1232contigP-littoralis_Contig1232:28323..31700 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LB00
PFAMsPPR,PPR_2,PPR_3
Model size2592
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue3.8e-06
EggNOG OGsKOG4197@1|root,KOG4197@2759|Eukaryota
Descriptionendonuclease activity
Cds size1305
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789537.9406424-UTR-P-littoralis_Contig1232:28322..284131680789537.9406424-UTR-P-littoralis_Contig1232:28322..28413Pylaiella littoralis U1_48UTRP-littoralis_Contig1232 28323..28413 +
1680789537.9565125-UTR-P-littoralis_Contig1232:28879..300751680789537.9565125-UTR-P-littoralis_Contig1232:28879..30075Pylaiella littoralis U1_48UTRP-littoralis_Contig1232 28880..30075 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789537.968178-CDS-P-littoralis_Contig1232:30075..311461680789537.968178-CDS-P-littoralis_Contig1232:30075..31146Pylaiella littoralis U1_48CDSP-littoralis_Contig1232 30076..31146 +
1680789537.978874-CDS-P-littoralis_Contig1232:31466..317001680789537.978874-CDS-P-littoralis_Contig1232:31466..31700Pylaiella littoralis U1_48CDSP-littoralis_Contig1232 31467..31700 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1232.13.1prot_P-littoralis_Contig1232.13.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1232 30076..31700 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1232.13.1

>prot_P-littoralis_Contig1232.13.1 ID=prot_P-littoralis_Contig1232.13.1|Name=mRNA_P-littoralis_Contig1232.13.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=435bp
MESLELRPNAQTYLAAIRAAGNRDKGEQAVSLLRAMADSGVTREAKCYAL
TIKACAGEGQWVRALEILREMKLKGVEPIVMGYNACIAACGDGNQWEKAV
ALVREMPTARVTPTVVSYGCAIDACGQSRQPQAALELLREMQQEAGINPD
AICYNKCIIAQGRGQHWQVAVDLLREMPTAGLPVKAPSYTAAIKACGDAG
ESRTAVALLREMQATLGVPPNVISYTATIAACGKGDHWGQAVRLLREMAT
MKVSPNDRTYTAVITACANSGQWQHALSLLREMPGAGATQTITCYTAAIK
ACGNGGEWEKAVELFRELPGAGIPADVMAYDACVKACGDSRAVDQAIILL
REMATMEPNVFTYNSALMACADGERERALELLEEMSRKGVVPDATTFKSA
LVACGEGSFGEVESLLGLSGGWDNGGDGGGDGPL*
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mRNA from alignment at P-littoralis_Contig1232:28323..31700+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1232.13.1 ID=mRNA_P-littoralis_Contig1232.13.1|Name=mRNA_P-littoralis_Contig1232.13.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3378bp|location=Sequence derived from alignment at P-littoralis_Contig1232:28323..31700+ (Pylaiella littoralis U1_48)
CGCAACTCGAAAGCTGCAAGGAGCAGCTCTTGCGTCACGTGCTACCACAC
ACAGCCGGCCGGAGCAGTTTGGTCTCAGGGGTTTCAGGAAGGTGGGATAA
GCGTTCCGATGGAAGTCAGCCGCACTGCGTATGTATGAAGTCGATAAGAT
AAGCAGCATCTCAGGAGAGCAAGACACATCGCCTTTTCAACCAACCAAAT
ATTGCATGGTTCTGTTGGATGTAAACAGCAGTGTCCGCGTTGTTATACAT
TTGAGATTAATGTCTTCCTGCAACAGGAGGGCCATCTCCTGGGGGGGTTG
GGCTGTGATCAACCGAGCAACTTTCGTGTCCCAACCATCGCTACATATCA
TACCTGCAGCCGTATCGAGCAGGTGGAGATTTCGAGATTTCATTCAAAAG
GAGTGCCGTTGCCGCACCTTTTTTCACCTCCCTCCTCACTTTGCTGCTAC
AGCATGTTATCCGATGTACCACAGCAGCAATCCTAGCAAATATTAACACC
GCACATATCTCTACCCTCCCACCCCCCGACCCCCTCCCACCTGCCCTATC
GCATCAGGGACTACCGTAAGCGTCTCTCACACAGCGTTTGTCGAAGGACG
CAGCCACGGACAGCGGAGTGCACACCGACCGCCACCATGACGTTCCGCCG
TGCTGTGGCCGTCACGGCAAAAGGCCTCACCCAGGTTGCTGGACGGGGCC
GCCTCAGCACGAACCCACCGGTAGCAGCAGCAGCAGCGACAGCAGATGCT
GCCACCGACTTTCCTGCGGCGTGTGCTGCCGATGTTAGCGTCAGCTCTTT
ATCTACGGTGACAGAGACTCGCACATCGTTCAGCAATAGTAGCAGCAGGG
CACCGTTTGCAGCAGCACAACAGCACTCGGGAGCAGCAGCAGAGGCAGGA
GCAGCAGTAGAAACGCCTCAAAACAGCAGCAATGATTGGGACATGCCTAT
CCTAGGCGTTCGCAGCGCTGGCGGTGGCGGCGGCGGTGGCGGCGGTGGCG
GCGGTGGGGCCGGTGATGGACTGCAGCAGCAGAATCAACAAAACCAATCG
GCACAGCAGTTCGAAGGCATGGAGAGCTCCGCGCCCCATGCGGCAGTTGA
GGGCGGACGGTTCAATTTCGAATATAAGTGGCAGCAGCGGCCGGCAGAAG
CTCCATCGGCAGGGGCACCGTTGCACCCGTGGGCTGCCGCGCGTTTGCGG
AGAGATTCGAAGCGAAAAACGCCAAGACGCGGCGCACCAGACTTTGGGAG
GCGCCGGGGGCCAATCATGAAGCGATTGCAGCGGGCTGGAATGTTGAGGG
ACTGCGACGAGGCGGAGCGAACGCTCCAAGACGCTCTTGAAAGACACCCG
GACATAATGGACGCGGTGATGTGCAACACGGCGCTCATCGCTTTCGCCCA
CTGCGGGAGGTGGCAGATCGTGCTGGAGGTGATGCAGCAGATGCGAGCGG
CGGGCATACCGCCGGACGCGGCCACCTACTCGGTCGCGATAAAGGCGTGC
GGGAAGGAAGGGAGTGGCGGCGCGCCGTCGCGCTGCTGAGGAATATGTCG
GCCGACAGGGTCGAACCCAACCCCATACACTACGTGTGCGCCATGACGGC
CTGCAGGGAGAGCGCGCAAGGCGCGGCGGCGGTGGAACTGCTGCGCGAGA
TGCCGGGGGCGGGGTTGAACCGAACGTGATCTGCTACAACTCGGCGATAG
CCGCCTGCGGCACGGACGGGCAATCCGAGGTCGCCGTAGACCTCTTCCGA
GAGATGGAATCCCTGGAGCTTCGGCCCAACGCCCAGACGTACCTCGCTGC
TATTCGGGCGGCCGGGAACCGAGACAAGGGAGAGCAGGCTGTGTCCCTGC
TCAGGGCGATGGCTGACTCGGGTGTTACTAGAGAAGCCAAGTGCTACGCG
CTCACCATCAAGGCTTGTGCCGGGGAAGGGCAGTGGGTGCGGGCGCTGGA
GATTTTGAGGGAGATGAAGTTGAAGGGAGTGGAACCGATTGTGATGGGCT
ACAACGCGTGCATCGCGGCTTGCGGGGACGGGAATCAGTGGGAAAAGGCC
GTAGCCCTTGTGCGGGAGATGCCGACGGCCAGGGTAACTCCTACAGTGGT
GAGCTACGGTTGTGCGATCGACGCTTGCGGGCAGTCCCGCCAGCCTCAGG
CCGCTCTGGAGCTGCTCCGCGAGATGCAGCAGGAGGCCGGGATCAACCCC
GACGCTATCTGCTACAACAAGTGCATAATCGCGCAGGGGCGTGGGCAGCA
TTGGCAGGTCGCGGTCGATCTCCTCCGGGAGATGCCGACCGCGGGGCTCC
CGGTCAAAGCGCCGAGCTACACGGCAGCCATCAAGGCCTGCGGCGACGCG
GGGGAGAGTCGAACCGCGGTGGCGCTGCTGCGGGAGATGCAGGCAACGCT
AGGCGTCCCGCCGAACGTGATCTCGTACACGGCGACTATCGCGGCCTGCG
GCAAGGGGGACCACTGGGGCCAGGCGGTCAGGCTCTTGCGAGAGATGGCC
ACGATGAAGGTGTCGCCAAACGACAGGACGTACACGGCGGTGATCACAGC
CTGCGCCAACAGCGGGCAGTGGCAGCATGCGCTCTCTCTGCTGCGTGAGA
TGCCGGGAGCTGGGGCCACCCAGACCATCACCTGCTACACCGCGGCCATC
AAGGCTTGCGGCAACGGCGGCGAGTGGGAGAAGGCGGTGGAATTGTTCCG
AGAGCTTCCGGGCGCGGGAATCCCCGCCGACGTCATGGCGTACGATGCCT
GCGTGAAGGCGTGCGGAGATAGCCGCGCGGTCGACCAAGCGATAATCCTC
CTGCGAGAGATGGCCACGATGGAGGTGCCTCCGAATGACACGACGTACTC
GGCGGTGATCACGGCCTGCGCCAACACCGGGCGTTGGGAGCAGGCGCTGT
CCCTGCTGCGCGAGATACCGGCGGCAGGGGTAACCCAGACCATCGATTGT
TTCACCGCCGCCATCAGGGCTTGCGGCGAAGGGGGCCAGTGGGAGAAGGC
GGTTGAAGTGTTCCGAGAGCTTCCGGGCGCGGGAATCCCCGCCGACGTTG
CGGCCTACAACGCCTGCGCGAAGGCATGCGGGGACGGACGCGCGGCCGAC
AAGCCGTGGCCCTCCTGCGGGAAATGTCGGCGGCCGGGCTCGAGCCGAAT
GTCTTCACCTACAATTCGGCCCTGATGGCTTGCGCGGACGGGGAGAGGGA
GCGGGCGCTGGAGCTGCTGGAAGAGATGTCGAGAAAGGGTGTCGTGCCCG
ACGCGACGACCTTCAAGTCGGCCTTGGTCGCTTGTGGGGAGGGGAGCTTT
GGCGAGGTGGAGAGCTTGCTGGGATTATCCGGGGGTTGGGACAACGGCGG
CGACGGCGGCGGCGACGGCCctCTCTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1232:28323..31700+

>mRNA_P-littoralis_Contig1232.13.1 ID=mRNA_P-littoralis_Contig1232.13.1|Name=mRNA_P-littoralis_Contig1232.13.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1305bp|location=Sequence derived from alignment at P-littoralis_Contig1232:28323..31700+ (Pylaiella littoralis U1_48)
ATGGAATCCCTGGAGCTTCGGCCCAACGCCCAGACGTACCTCGCTGCTAT
TCGGGCGGCCGGGAACCGAGACAAGGGAGAGCAGGCTGTGTCCCTGCTCA
GGGCGATGGCTGACTCGGGTGTTACTAGAGAAGCCAAGTGCTACGCGCTC
ACCATCAAGGCTTGTGCCGGGGAAGGGCAGTGGGTGCGGGCGCTGGAGAT
TTTGAGGGAGATGAAGTTGAAGGGAGTGGAACCGATTGTGATGGGCTACA
ACGCGTGCATCGCGGCTTGCGGGGACGGGAATCAGTGGGAAAAGGCCGTA
GCCCTTGTGCGGGAGATGCCGACGGCCAGGGTAACTCCTACAGTGGTGAG
CTACGGTTGTGCGATCGACGCTTGCGGGCAGTCCCGCCAGCCTCAGGCCG
CTCTGGAGCTGCTCCGCGAGATGCAGCAGGAGGCCGGGATCAACCCCGAC
GCTATCTGCTACAACAAGTGCATAATCGCGCAGGGGCGTGGGCAGCATTG
GCAGGTCGCGGTCGATCTCCTCCGGGAGATGCCGACCGCGGGGCTCCCGG
TCAAAGCGCCGAGCTACACGGCAGCCATCAAGGCCTGCGGCGACGCGGGG
GAGAGTCGAACCGCGGTGGCGCTGCTGCGGGAGATGCAGGCAACGCTAGG
CGTCCCGCCGAACGTGATCTCGTACACGGCGACTATCGCGGCCTGCGGCA
AGGGGGACCACTGGGGCCAGGCGGTCAGGCTCTTGCGAGAGATGGCCACG
ATGAAGGTGTCGCCAAACGACAGGACGTACACGGCGGTGATCACAGCCTG
CGCCAACAGCGGGCAGTGGCAGCATGCGCTCTCTCTGCTGCGTGAGATGC
CGGGAGCTGGGGCCACCCAGACCATCACCTGCTACACCGCGGCCATCAAG
GCTTGCGGCAACGGCGGCGAGTGGGAGAAGGCGGTGGAATTGTTCCGAGA
GCTTCCGGGCGCGGGAATCCCCGCCGACGTCATGGCGTACGATGCCTGCG
TGAAGGCGTGCGGAGATAGCCGCGCGGTCGACCAAGCGATAATCCTCCTG
CGAGAGATGGCCACGATGGAGCCGAATGTCTTCACCTACAATTCGGCCCT
GATGGCTTGCGCGGACGGGGAGAGGGAGCGGGCGCTGGAGCTGCTGGAAG
AGATGTCGAGAAAGGGTGTCGTGCCCGACGCGACGACCTTCAAGTCGGCC
TTGGTCGCTTGTGGGGAGGGGAGCTTTGGCGAGGTGGAGAGCTTGCTGGG
ATTATCCGGGGGTTGGGACAACGGCGGCGACGGCGGCGGCGACGGCCctC
TCTGA
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