prot_P-littoralis_Contig1232.9.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig1232.9.1
Unique Nameprot_P-littoralis_Contig1232.9.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length533
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1232.9.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 391..512
e-value: 1.5E-25
score: 91.6
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 188..390
e-value: 1.2E-44
score: 155.0
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 408..510
e-value: 1.1E-8
score: 34.7
coord: 222..338
e-value: 3.1E-11
score: 43.0
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 322..353
e-value: 2.8E-5
score: 22.0
coord: 252..283
e-value: 1.5E-5
score: 22.9
coord: 287..320
e-value: 2.9E-8
score: 31.4
coord: 463..496
e-value: 2.8E-5
score: 22.0
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 249..283
score: 10.413293
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 319..353
score: 11.39981
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 460..494
score: 10.018685
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 284..318
score: 11.388848
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 425..459
score: 9.240434
NoneNo IPR availablePANTHERPTHR47942TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATEDcoord: 195..365
coord: 357..530

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1232contigP-littoralis_Contig1232:14625..17222 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1232.9.1mRNA_P-littoralis_Contig1232.9.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig1232 14623..17222 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig1232.9.1 ID=prot_P-littoralis_Contig1232.9.1|Name=mRNA_P-littoralis_Contig1232.9.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=533bp
LDYRAVPHVHSGHSQQCARAQALPPCVVRSKYRGEEMASCGRAALLLQAS
RRLSRALPCSTSRPDECSSAAAAHCTTTRTRSVSGGLMFSSAHRGFRDLT
VDDGLSMLSSEDAADVGEAGLEEALEESPLPAVAQQQETTTRAAPSGDVC
QPRGAALASAGDPEWRSMNTGGGPLAGRGREKSHAKRMKLALFRNDFREA
RRVLSEAVEEGVVEGRMYYLALSVFSSCKQWREVLAIFDELRAAGFRPGL
HAYNMAITACSNNNDADGAAELFREMPAAGVVPEISTYTGVMLAYGNQGR
WEEAIGLYDEMVGGGICPDERVYRAAIEACAGGGRWEKAVQLIREMLTAG
VSPVASSYRAAIMACRNAGQWKLAAAFLREMGAAEDDCPDHAAYVDAISA
SGAALEWELALQLLREMPAVGLTPQSSSYACCIKACSKAGQSELAGGLIR
EMAHAGLRPGLASYNCVLKACATGRQWKVAAALLREMARTGVAPDVSSYT
SAIVACAPTGGRGDGVGSGGFEQAVALLREVRG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR033443PPR_long
IPR002885Pentatricopeptide_repeat