mRNA_P-littoralis_Contig1232.9.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1232.9.1
Unique NamemRNA_P-littoralis_Contig1232.9.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1232.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1232contigP-littoralis_Contig1232:14623..17222 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1601
Hectar predicted targeting categoryother localisation
Exons3
Cds size1599
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789537.8884249-CDS-P-littoralis_Contig1232:14624..151111680789537.8884249-CDS-P-littoralis_Contig1232:14624..15111Pylaiella littoralis U1_48CDSP-littoralis_Contig1232 14625..15111 -
1680789537.8987737-CDS-P-littoralis_Contig1232:15476..165431680789537.8987737-CDS-P-littoralis_Contig1232:15476..16543Pylaiella littoralis U1_48CDSP-littoralis_Contig1232 15477..16543 -
1680789537.9067478-CDS-P-littoralis_Contig1232:17177..172221680789537.9067478-CDS-P-littoralis_Contig1232:17177..17222Pylaiella littoralis U1_48CDSP-littoralis_Contig1232 17178..17222 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1232.9.1prot_P-littoralis_Contig1232.9.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1232 14625..17222 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1232.9.1

>prot_P-littoralis_Contig1232.9.1 ID=prot_P-littoralis_Contig1232.9.1|Name=mRNA_P-littoralis_Contig1232.9.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=533bp
LDYRAVPHVHSGHSQQCARAQALPPCVVRSKYRGEEMASCGRAALLLQAS
RRLSRALPCSTSRPDECSSAAAAHCTTTRTRSVSGGLMFSSAHRGFRDLT
VDDGLSMLSSEDAADVGEAGLEEALEESPLPAVAQQQETTTRAAPSGDVC
QPRGAALASAGDPEWRSMNTGGGPLAGRGREKSHAKRMKLALFRNDFREA
RRVLSEAVEEGVVEGRMYYLALSVFSSCKQWREVLAIFDELRAAGFRPGL
HAYNMAITACSNNNDADGAAELFREMPAAGVVPEISTYTGVMLAYGNQGR
WEEAIGLYDEMVGGGICPDERVYRAAIEACAGGGRWEKAVQLIREMLTAG
VSPVASSYRAAIMACRNAGQWKLAAAFLREMGAAEDDCPDHAAYVDAISA
SGAALEWELALQLLREMPAVGLTPQSSSYACCIKACSKAGQSELAGGLIR
EMAHAGLRPGLASYNCVLKACATGRQWKVAAALLREMARTGVAPDVSSYT
SAIVACAPTGGRGDGVGSGGFEQAVALLREVRG
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mRNA from alignment at P-littoralis_Contig1232:14623..17222-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1232.9.1 ID=mRNA_P-littoralis_Contig1232.9.1|Name=mRNA_P-littoralis_Contig1232.9.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2600bp|location=Sequence derived from alignment at P-littoralis_Contig1232:14623..17222- (Pylaiella littoralis U1_48)
CTGGACTACCGGGCTGTGCCTCACGTTCACAGTGGACATTCTCAGGTGCT
CTGTTTGATCGTATGCTGTTTCACTCGATCCTTCTCAATTCTTTTTCAAC
AGATAGCATACCCCTCCGTGCCAGCCTGATTTTTCATGTCCCACATTCAA
GCATCCAGAGAATAATGCAGTCGGTTCGAACAGCGGTGTGATTCTGGGTA
CTGCTGTACCGTTGTGAAGCAATATTGGGAACATTCCGTTGAAAGCTTTC
CAGAAAGTCATCGCTTGGTACTGGGAGAGTATACAGCAGTAGGTTGACAG
GTGGCAGCCTATGGCACGTGTACTTGGTGGCTGGAATATGCAACACCATC
TCATAGTACGCCCCTGGAATTGCGTAGACATGCGGCATGTTCACTTGATC
CAATGGAATGTCGCTTGCCGTGTGGCATACCTCAGCGATCCACACACCCG
ACGACACACGCGTTGGGAGTCAAGCGGACACGTAGCAGTTTCCTTGTTGA
GGTACCCAGGAGTCTTCACCCCACTCCCCCCCTAGCCGACCCCGCGTTGC
GTAACCTTTTGCTACGAAGAACGACACAACGCCCACCGAAAATCTTCACA
ACCGACCACCCCCTGTTCTGCGCGTCATGTCCCCCGCTTCGTGTCACCTG
TTTTCTCGCCATGCTACCTGGAACAACAGCAGTGCGCGCGGGCGCAGGCA
CTACCGCCGTGCGTGGTACGAAGCAAATACAGAGGGGAGGAGATGGCCTC
CTGTGGGCGAGCTGCGCTGTTGTTGCAGGCCTCGCGTCGACTCTCGCGGG
CGCTGCCCTGTTCCACCAGCAGACCCGACGAGTGCAGCAGCGCTGCGGCA
GCACACTGCACGACGACGCGCACACGTTCCGTGTCAGGAGGGTTGATGTT
CTCCTCCGCCCACCGCGGCTTTCGAGATCTGACGGTAGACGACGGCCTTA
GCATGTTATCTTCTGAAGACGCCGCTGACGTAGGCGAGGCGGGGCTTGAG
GAAGCTTTGGAGGAAAGTCCGTTACCGGCAGTCGCGCAGCAGCAGGAGAC
GACGACACGCGCGGCGCCGTCGGGTGACGTTTGCCAGCCGCGAGGGGCTG
CGTTGGCCTCGGCGGGGGACCCCGAATGGAGGAGTATGAACACCGGCGGC
GGTCCGTTGGCCGGTAGGGGCAGGGAGAAATCGCACGCGAAGCGCATGAA
GCTTGCGCTTTTTCGCAACGACTTTCGAGAAGCGCGGCGAGTGTTGTCGG
AGGCCGTCGAGGAAGGCGTAGTCGAAGGCCGCATGTACTACTTGGCTCTC
AGCGTGTTTTCCAGCTGCAAGCAGTGGAGGGAGGTTCTCGCGATCTTCGA
CGAGCTGAGGGCTGCGGGTTTCAGGCCAGGGCTTCACGCCTACAACATGG
CCATTACGGCGTGCTCGAACAACAACGATGCGGACGGGGCTGCTGAACTG
TTCCGCGAGATGCCGGCGGCGGGGGTCGTTCCCGAGATATCGACCTACAC
CGGAGTGATGCTGGCTTACGGGAATCAGGGCCGCTGGGAAGAGGCCATCG
GACTGTACGACGAGATGGTTGGTGGAGGAATATGTCCGGATGAGCGGGTG
TACAGAGCGGCGATAGAGGCCTGCGCTGGAGGGGGGCGCTGGGAGAAGGC
CGTGCAGCTTATTCGAGAAATGCTCACTGCCGGTGTCTCACCAGTTGCTT
CGAGCTATCGGGCTGCCATCATGGCCTGCAGGAATGCTGGGCAATGGTGA
GAACCACGTACCCGCCCCGAGAACAGGGATTGTTTGTTGAAACAAATATA
GAAACGTGGCCGTGTGTGGCACTTGTGCTTTGCGATTGTTTGTGATGCTT
TTTTTTTTGTGGTGCCGCGGGCGGGACTGCAGAGCGCGAAGGAGTTTTTA
CACGACGATGTTCATCCCGTAGGTTGCAGTTCTGGTTGATGTTGAGAGAG
AGTCCAACCAGATTTGGCTTCAATAAGTGGTCGTTTGGCCGGCAATAAGA
AAAGTCAATCAAACAGCGACTACAGACAGTCATGCTAAATGTAAACACAT
ATCTCTTCCCTTTTTCGCCACGACGCTTTTCGATTGCGTATGCTGTACTT
CTGTCGCGAAGGAAGCTCGCCGCCGCTTTTCTGAGAGAGATGGGGGCAGC
AGAAGACGATTGTCCTGACCATGCTGCATACGTGGACGCCATTTCGGCCT
CCGGCGCTGCTCTAGAGTGGGAGCTAGCCCTGCAGCTCCTGCGAGAGATG
CCGGCAGTAGGGTTAACTCCTCAGTCTTCCAGCTACGCCTGCTGCATTAA
GGCTTGCAGCAAGGCCGGCCAGTCCGAGCTCGCGGGGGGGCTGATCAGAG
AAATGGCACACGCAGGTCTGCGCCCTGGATTGGCCAGCTACAACTGCGTG
CTCAAAGCGTGCGCCACGGGTAGGCAGTGGAAGGTTGCAGCTGCACTGCT
ACGAGAGATGGCTCGCACCGGCGTAGCTCCCGACGTGTCCAGCTACACGT
CTGCCATCGTGGCCTGCGCCCCTACTGGCGGCCGTGGCGACGGCGTGGGG
AGCGGCGGGTTCGAGCAAGCCGTGGCTCTTTTGCGCGAGGTGCGAGGAGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1232:14623..17222-

>mRNA_P-littoralis_Contig1232.9.1 ID=mRNA_P-littoralis_Contig1232.9.1|Name=mRNA_P-littoralis_Contig1232.9.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1599bp|location=Sequence derived from alignment at P-littoralis_Contig1232:14623..17222- (Pylaiella littoralis U1_48)
CTGGACTACCGGGCTGTGCCTCACGTTCACAGTGGACATTCTCAGCAGTG
CGCGCGGGCGCAGGCACTACCGCCGTGCGTGGTACGAAGCAAATACAGAG
GGGAGGAGATGGCCTCCTGTGGGCGAGCTGCGCTGTTGTTGCAGGCCTCG
CGTCGACTCTCGCGGGCGCTGCCCTGTTCCACCAGCAGACCCGACGAGTG
CAGCAGCGCTGCGGCAGCACACTGCACGACGACGCGCACACGTTCCGTGT
CAGGAGGGTTGATGTTCTCCTCCGCCCACCGCGGCTTTCGAGATCTGACG
GTAGACGACGGCCTTAGCATGTTATCTTCTGAAGACGCCGCTGACGTAGG
CGAGGCGGGGCTTGAGGAAGCTTTGGAGGAAAGTCCGTTACCGGCAGTCG
CGCAGCAGCAGGAGACGACGACACGCGCGGCGCCGTCGGGTGACGTTTGC
CAGCCGCGAGGGGCTGCGTTGGCCTCGGCGGGGGACCCCGAATGGAGGAG
TATGAACACCGGCGGCGGTCCGTTGGCCGGTAGGGGCAGGGAGAAATCGC
ACGCGAAGCGCATGAAGCTTGCGCTTTTTCGCAACGACTTTCGAGAAGCG
CGGCGAGTGTTGTCGGAGGCCGTCGAGGAAGGCGTAGTCGAAGGCCGCAT
GTACTACTTGGCTCTCAGCGTGTTTTCCAGCTGCAAGCAGTGGAGGGAGG
TTCTCGCGATCTTCGACGAGCTGAGGGCTGCGGGTTTCAGGCCAGGGCTT
CACGCCTACAACATGGCCATTACGGCGTGCTCGAACAACAACGATGCGGA
CGGGGCTGCTGAACTGTTCCGCGAGATGCCGGCGGCGGGGGTCGTTCCCG
AGATATCGACCTACACCGGAGTGATGCTGGCTTACGGGAATCAGGGCCGC
TGGGAAGAGGCCATCGGACTGTACGACGAGATGGTTGGTGGAGGAATATG
TCCGGATGAGCGGGTGTACAGAGCGGCGATAGAGGCCTGCGCTGGAGGGG
GGCGCTGGGAGAAGGCCGTGCAGCTTATTCGAGAAATGCTCACTGCCGGT
GTCTCACCAGTTGCTTCGAGCTATCGGGCTGCCATCATGGCCTGCAGGAA
TGCTGGGCAATGGAAGCTCGCCGCCGCTTTTCTGAGAGAGATGGGGGCAG
CAGAAGACGATTGTCCTGACCATGCTGCATACGTGGACGCCATTTCGGCC
TCCGGCGCTGCTCTAGAGTGGGAGCTAGCCCTGCAGCTCCTGCGAGAGAT
GCCGGCAGTAGGGTTAACTCCTCAGTCTTCCAGCTACGCCTGCTGCATTA
AGGCTTGCAGCAAGGCCGGCCAGTCCGAGCTCGCGGGGGGGCTGATCAGA
GAAATGGCACACGCAGGTCTGCGCCCTGGATTGGCCAGCTACAACTGCGT
GCTCAAAGCGTGCGCCACGGGTAGGCAGTGGAAGGTTGCAGCTGCACTGC
TACGAGAGATGGCTCGCACCGGCGTAGCTCCCGACGTGTCCAGCTACACG
TCTGCCATCGTGGCCTGCGCCCCTACTGGCGGCCGTGGCGACGGCGTGGG
GAGCGGCGGGTTCGAGCAAGCCGTGGCTCTTTTGCGCGAGGTGCGAGGA
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