mRNA_P-littoralis_Contig1232.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1232.5.1
Unique NamemRNA_P-littoralis_Contig1232.5.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1232.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1232contigP-littoralis_Contig1232:9714..11492 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size467
Hectar predicted targeting categorymitochondrion
Exons2
Cds size234
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789537.8268623-CDS-P-littoralis_Contig1232:9713..97521680789537.8268623-CDS-P-littoralis_Contig1232:9713..9752Pylaiella littoralis U1_48CDSP-littoralis_Contig1232 9714..9752 -
1680789537.83967-CDS-P-littoralis_Contig1232:11066..112611680789537.83967-CDS-P-littoralis_Contig1232:11066..11261Pylaiella littoralis U1_48CDSP-littoralis_Contig1232 11067..11261 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789537.84984-UTR-P-littoralis_Contig1232:11261..114921680789537.84984-UTR-P-littoralis_Contig1232:11261..11492Pylaiella littoralis U1_48UTRP-littoralis_Contig1232 11262..11492 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1232.5.1prot_P-littoralis_Contig1232.5.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1232 9714..11261 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1232.5.1

>prot_P-littoralis_Contig1232.5.1 ID=prot_P-littoralis_Contig1232.5.1|Name=mRNA_P-littoralis_Contig1232.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=78bp
MLSFATRTLRPWCGKAFAPPRGIGAASRHVTTRPVLSELFETAESRPTNN
GSTWPGHLLMATRFQPTTAREQSSCFVS
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mRNA from alignment at P-littoralis_Contig1232:9714..11492-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1232.5.1 ID=mRNA_P-littoralis_Contig1232.5.1|Name=mRNA_P-littoralis_Contig1232.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1779bp|location=Sequence derived from alignment at P-littoralis_Contig1232:9714..11492- (Pylaiella littoralis U1_48)
AGGCGACACCCACCATCAGCACTCATGGTTCTGTTCAATCGAAACAAGAG
CATGCCCAAGAAATCCGACCCTCAGGTGAGGAAGAGCCTTCAGGGAGCGT
GCGCTGAAAGTTGTGTTCATGACCGCGCATGAAAATGAAAAGGGGGCAGA
TTGAAGCTGGCTGACCTGCTTCCCAGTTCCAATGTGCCACGAACCTAAAC
TGCTTTGAAGTGGGCGCTGTTGTTTGCGCGGATGCTTTCTTTCGCAACAA
GGACGCTTCGGCCTTGGTGTGGTAAAGCTTTTGCACCTCCTCGAGGTATT
GGGGCCGCCTCAAGGCATGTGACCACTCGCCCCGTTTTGTCGGAGTTGTT
CGAAACCGCGGAATCGCGACCAACAAATAACGGGAGCACTTGGCCCGGTC
ACTTGTTGATGGCAACTCGATTCCAGGTACAGCAGTACAGTATATGAATG
ATACGGCGGTATGAATGGTTCTAAAAAGCAGATTTTGTGTACGTGGTATG
CGATATCTCGGAAGAGATACGGGCTGCTACCGAGATAATCCGTGATGCTA
TCACAGAATGCACGGCCTGGCCCCGTTGTTATCTTTGATCCCCCTGCTGT
TCCAGGAGACACCCCACCCCCATCCGTCTGCAACCGGGTGTTCTCACCAG
AGGTCAGGTTTGAGAGCCAAAGTCGCTTCTCTTGTACGCATGTACCAGGT
ATGATAACTATGAATTCTCGAGAGAGACGCGGGCACATTTGATTTATGCC
ATTTTGGATCATAAAAAAAAAAAAAAGGACTTGTATCAGGTATGGCAGAC
CTTCGCGTCGCACTCCTCGCAGTACAGAGGGTTGGTTGAGCCTGCTGAAA
AGAGGAGGAAGCGTCTAGAATTTGACACCCGAGCGCTCGCTGTGGCACGC
TCAGTACTGTACCATACTATCATACTCTGAACACACCTCCTCAACAGCAG
TGTCCCGTTTGTGACGCACGAGGCAACCATACTCGTACATTAAACCGCGT
TAGAGCGGGGAAAGGGGCCAAAATCCAGCAGCAGTATGTACGTTGATGGA
GACCTTAAACCTCGCAGGAAAACCCCAAAACAATATGATATGCCGTACAG
CGCTAGTCCTACCGTATTCTACACAAGATACCACACCCCGTGTTAAGCTT
TTTGCATTCCATATAGCTCCACAACCAGGAGGGTGCCACTGCCGAAAAGG
GTGGTTTTGGAAAGATCTCGTCGAGAGCTTTCGTATGACGGGCTGTTTGG
TGTTCGCACCCTCCTGGTTGTGGAGCAATACGGAATGCAAAAAACCTAAC
ACGGGGTGTGGTATCTTGTGTAGAATACGGTAACCCCTCACCCGCTCCGC
CCCATCCCGCCCCGCCTTATGCGTGCCCCCATCCTGGTATGCGCAAACGC
ACGGCTGTCTAGCCCCCCCTCCCCCCTCCCCCCGTCCTCAACATCAGTCA
ATCGCTCGCCCCCAAAGCCGGAGTCACGGATGACACATCGAGTGAAAGGA
AACTGAGCATCACTTTTCCCTTTCTCTCTGGAGTACAGCAGTACATGTCA
AACTTCTGTGTGGAGCGCTTTTGTGCTGCTTTTGGTGATCGTCCGCGCGC
TGCAGCATCACACAAGAGTTTCGAGATGATGATACAGAGGAACAGCAGCA
TGGCCATGACCGCCGTGCATGTTGCAGCAGCACTGAAACGATAGCACGAC
CCCCCCACCCCCCATCTCTTCCTCAAACCAACAACAGCAGCCCACCACCG
CCCGCGAGCAAAGCTCGTGTTTCGTCAGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1232:9714..11492-

>mRNA_P-littoralis_Contig1232.5.1 ID=mRNA_P-littoralis_Contig1232.5.1|Name=mRNA_P-littoralis_Contig1232.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=234bp|location=Sequence derived from alignment at P-littoralis_Contig1232:9714..11492- (Pylaiella littoralis U1_48)
ATGCTTTCTTTCGCAACAAGGACGCTTCGGCCTTGGTGTGGTAAAGCTTT
TGCACCTCCTCGAGGTATTGGGGCCGCCTCAAGGCATGTGACCACTCGCC
CCGTTTTGTCGGAGTTGTTCGAAACCGCGGAATCGCGACCAACAAATAAC
GGGAGCACTTGGCCCGGTCACTTGTTGATGGCAACTCGATTCCAGCCCAC
CACCGCCCGCGAGCAAAGCTCGTGTTTCGTCAGC
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