mRNA_P-littoralis_Contig1231.8.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1231.8.1
Unique NamemRNA_P-littoralis_Contig1231.8.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1231.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1231contigP-littoralis_Contig1231:40690..41618 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size318
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size165
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789537.5898788-UTR-P-littoralis_Contig1231:40689..408421680789537.5898788-UTR-P-littoralis_Contig1231:40689..40842Pylaiella littoralis U1_48UTRP-littoralis_Contig1231 40690..40842 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789537.6043963-CDS-P-littoralis_Contig1231:40842..409691680789537.6043963-CDS-P-littoralis_Contig1231:40842..40969Pylaiella littoralis U1_48CDSP-littoralis_Contig1231 40843..40969 +
1680789537.6148086-CDS-P-littoralis_Contig1231:41580..416181680789537.6148086-CDS-P-littoralis_Contig1231:41580..41618Pylaiella littoralis U1_48CDSP-littoralis_Contig1231 41581..41618 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1231.8.1prot_P-littoralis_Contig1231.8.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1231 40843..41618 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1231.8.1

>prot_P-littoralis_Contig1231.8.1 ID=prot_P-littoralis_Contig1231.8.1|Name=mRNA_P-littoralis_Contig1231.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=55bp
MVELEKRGPRLLLIPPSHQGRAAVVLSPWARTPNMVQRSRNKGWRVSRAM
YYGW*
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mRNA from alignment at P-littoralis_Contig1231:40690..41618+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1231.8.1 ID=mRNA_P-littoralis_Contig1231.8.1|Name=mRNA_P-littoralis_Contig1231.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=929bp|location=Sequence derived from alignment at P-littoralis_Contig1231:40690..41618+ (Pylaiella littoralis U1_48)
GAGGGTGTCCAAGGATCTATCTACAGCTGGTGTATATCGCCACTAGAGTT
TGACAGTTGGCAAGAGGGTCCGGTGGATGGTCTTTGTTGGTACGAAGAGG
GTGAAGAAAACCAGTCTTGAAGAAAGGAGAGGATAACTACACAACCCCAG
AGGATGGTTGAGCTGGAGAAACGGGGCCCAAGGCTGCTGTTGATCCCGCC
ATCACACCAGGGGAGGGCGGCAGTTGTCTTATCTCCATGGGCGAGGACAC
CCAACATGGTTCAGAGGTCACGCAACAAAGGTATATACGGTACGTTGTAC
CTCTTAGATGCATTTTGTTGGAGTTTTTACGCTCACTTGTAGTTATCAGT
CGGCACAGTCCTTGCTTCGCCTGCTGTACGTGCGCGCAGCACCAGCAGCA
GGAGCAGCAGTGGAATGCGCCTGCTGCATGTATGTATGGCAGTATTTGTA
CAAGCATCTGCTGCTGTCGTCAGAGTTACTATTGTTACAGAAATCATGCC
GTGCTACGCCGCCACCATCACACTTGTCCACGTTACCACGTCAAACCTCA
CTCACTCATAACATGTGCAGTTTTCTGGGAACGCGCCCGAGGCTACCGAG
AACAATCCCCCTGTAGAGAAAATGTTTGGGGCAATGGTGATAAATGAACT
TTTTGATATTTCTCGGAGATTCATGTCGAGTGTAGTCAGCGAAAAAGAAA
CAGATTGGGTTGCTGCAGGGTGGGCCAAGGGGGGGGGGGCGCGGTGCTTG
TCTGCCACGAATCTATGTAGGACTACAATTGTTTTTCTGCTCTCGCTGAT
ACGCTATCCCTTTGCCGAACGTTTCTTTTTTTATCACATGTGTTCTTCAC
GCTGTCTTGCTGTGTTCGTGTGCTGTTGCTCGCCTTTTCAGGTTGGCGTG
TGTCCAGGGCGATGTACTACGGATGGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1231:40690..41618+

>mRNA_P-littoralis_Contig1231.8.1 ID=mRNA_P-littoralis_Contig1231.8.1|Name=mRNA_P-littoralis_Contig1231.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=165bp|location=Sequence derived from alignment at P-littoralis_Contig1231:40690..41618+ (Pylaiella littoralis U1_48)
ATGGTTGAGCTGGAGAAACGGGGCCCAAGGCTGCTGTTGATCCCGCCATC
ACACCAGGGGAGGGCGGCAGTTGTCTTATCTCCATGGGCGAGGACACCCA
ACATGGTTCAGAGGTCACGCAACAAAGGTTGGCGTGTGTCCAGGGCGATG
TACTACGGATGGTGA
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