mRNA_P-littoralis_Contig123.121.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig123.121.2
Unique NamemRNA_P-littoralis_Contig123.121.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig123.121.2 vs. uniprot
Match: A0A6H5L0N7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0N7_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 4.160e-35
Identity = 72/101 (71.29%), Postives = 80/101 (79.21%), Query Frame = 3 
Query:   48 VAPKPRRGRAAGNMEERLPRRPAVRSVVYRRAFEVFPAADILPGRALFTRSCGGGGVVRRPRSAREQGREWHETLVSTAPERQHHILQRGQHGRLIVFFIG 350
            V P+PRRG AAG+MEERLPRRP VRS+++ RA E     D+LPGRA F RSCGG GVVRR RS REQGRE HETLV+TAPERQ HILQRG+HGRL   F G
Sbjct:   58 VKPRPRRGGAAGSMEERLPRRPVVRSMLHLRASE-----DMLPGRAFFARSCGGRGVVRRTRSPREQGREGHETLVATAPERQPHILQRGKHGRLPNVFYG 153
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BLAST of mRNA_P-littoralis_Contig123.121.2 vs. uniprot
Match: A0A6H5JIQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIQ0_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 7.840e-11
Identity = 51/90 (56.67%), Postives = 54/90 (60.00%), Query Frame = 2 
Query:   38 EATGGA---QAE----EGAGGGQHGGEAPAEARGQKRGLPEGF*SISRRRYIARPGSLHPFVRRRRGCSASPLRSRTRARVARDLGVNCA 286
            E+TGGA   QAE    EG GGG HGG A AEARGQKRGLPE            + G   P    + GCSASPL SRTRA V RDLG NCA
Sbjct:  157 ESTGGAGHAQAEPADQEGEGGGLHGGHALAEARGQKRGLPE---------ICCQAGLSSPVRAEKEGCSASPLPSRTRATVTRDLGGNCA 237
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BLAST of mRNA_P-littoralis_Contig123.121.2 vs. uniprot
Match: A0A6H5KEJ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEJ2_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 2.360e-8
Identity = 36/57 (63.16%), Postives = 41/57 (71.93%), Query Frame = 3 
Query:   21 LWKLKRKPPVAP--------------KPRRGRAAGNMEERLPRRPAVRSVVYRRAFE 149
            LWKL+R+PPVAP              +PRRGRAAG+MEERLPRRPAVRSV+Y R FE
Sbjct:  274 LWKLRRRPPVAPQPKSEGARVGSVKPRPRRGRAAGSMEERLPRRPAVRSVLYGRTFE 330
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BLAST of mRNA_P-littoralis_Contig123.121.2 vs. uniprot
Match: D7FUQ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUQ1_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 8.350e-8
Identity = 31/38 (81.58%), Postives = 33/38 (86.84%), Query Frame = 2 
Query:  173 ARPGSLHPFVRRRRGCSASPLRSRTRARVARDLGVNCA 286
            A+ G LHPFVRR+RGCSA PL SRTRARVARDLG NCA
Sbjct:  280 AKRGFLHPFVRRKRGCSAFPLPSRTRARVARDLGGNCA 317
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BLAST of mRNA_P-littoralis_Contig123.121.2 vs. uniprot
Match: A0A6H5JRC9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRC9_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 1.950e-7
Identity = 26/29 (89.66%), Postives = 27/29 (93.10%), Query Frame = 1 
Query:  214 GLFGVPAPLENKGESGTRPWCQLRLNASI 300
            G+FGVPAPLENKGESGTRPW QLRLNAS 
Sbjct:  210 GVFGVPAPLENKGESGTRPWWQLRLNASF 238
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BLAST of mRNA_P-littoralis_Contig123.121.2 vs. uniprot
Match: A0A6H5JP68_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP68_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 5.620e-7
Identity = 37/55 (67.27%), Postives = 39/55 (70.91%), Query Frame = 2 
Query:   23 LEIEEEATGGA--------------QAEEGAGGGQHGGEAPAEARGQKRGLPEGF 145
            +EIE+EAT GA              QAEEGAGGGQHGGEAPAEARGQKR LPEGF
Sbjct:  285 VEIEKEATSGAPAEVGGGEGGFGQAQAEEGAGGGQHGGEAPAEARGQKRNLPEGF 339
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BLAST of mRNA_P-littoralis_Contig123.121.2 vs. uniprot
Match: A0A6H5JP41_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP41_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 7.470e-7
Identity = 29/35 (82.86%), Postives = 31/35 (88.57%), Query Frame = 3 
Query:   45 PVAPKPRRGRAAGNMEERLPRRPAVRSVVYRRAFE 149
            PV PKPRRGRAAG+MEER PRRP VRSV+Y RAFE
Sbjct:   18 PVMPKPRRGRAAGSMEERHPRRPVVRSVLYMRAFE 52
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig123.121.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5L0N7_9PHAE4.160e-3571.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JIQ0_9PHAE7.840e-1156.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEJ2_9PHAE2.360e-863.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUQ1_ECTSI8.350e-881.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JRC9_9PHAE1.950e-789.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JP68_9PHAE5.620e-767.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JP41_9PHAE7.470e-782.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig123contigP-littoralis_Contig123:522788..523668 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size717
Hectar predicted targeting categoryother localisation
Exons2
Cds size291
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789537.5201788-UTR-P-littoralis_Contig123:522787..5231271680789537.5201788-UTR-P-littoralis_Contig123:522787..523127Pylaiella littoralis U1_48UTRP-littoralis_Contig123 522788..523127 -
1680789537.5540237-UTR-P-littoralis_Contig123:523582..5236681680789537.5540237-UTR-P-littoralis_Contig123:523582..523668Pylaiella littoralis U1_48UTRP-littoralis_Contig123 523583..523668 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789537.5327923-CDS-P-littoralis_Contig123:523127..5233541680789537.5327923-CDS-P-littoralis_Contig123:523127..523354Pylaiella littoralis U1_48CDSP-littoralis_Contig123 523128..523354 -
1680789537.5441692-CDS-P-littoralis_Contig123:523518..5235821680789537.5441692-CDS-P-littoralis_Contig123:523518..523582Pylaiella littoralis U1_48CDSP-littoralis_Contig123 523519..523582 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig123.121.2prot_P-littoralis_Contig123.121.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig123 523128..523582 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig123.121.2

>prot_P-littoralis_Contig123.121.2 ID=prot_P-littoralis_Contig123.121.2|Name=mRNA_P-littoralis_Contig123.121.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=97bp
MEERLPRRPAVRSVVYRRAFEVFPAADILPGRALFTRSCGGGGVVRRPRS
AREQGREWHETLVSTAPERQHHILQRGQHGRLIVFFIGLRASTCRG*
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mRNA from alignment at P-littoralis_Contig123:522788..523668-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig123.121.2 ID=mRNA_P-littoralis_Contig123.121.2|Name=mRNA_P-littoralis_Contig123.121.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=881bp|location=Sequence derived from alignment at P-littoralis_Contig123:522788..523668- (Pylaiella littoralis U1_48)
GGGGCCGGGATCGGAGGAGGCTCTGGAAATTGAAGAGGAAGCCACCGGTG
GCGCCCAAGCCGAGGAGGGGGCGGGCGGCGGGCAACATGGAGGAGAGGCT
CCCGCGGAGGCCCGCGGTCAGAAGCGTGGTCTACCGGAGGGCTTTTGAAG
GTGTCTTTTTGTTTAATTTGTAGCTTCTTCAGGCAGCTGATCTCGCTCCC
AGCTACTCCCGGATAAGCAGTTGGAAACGCAGTCTGCCACCGGACTTGTG
AAGGTGTGTTTTTTCACGATGTCTCATTGCACGAACGTCAATCGTAATAC
CCCACCGCCCCCAGTATTTCCCGCCGCAGATATATTGCCAGGCCGGGCTC
TCTTCACCCGTTCGTGCGGAGGAGGAGGGGTTGTTCGGCGTCCCCGCTCC
GCTCGAGAACAAGGGCGAGAGTGGCACGAGACCTTGGTGTCAACTGCGCC
TGAACGCCAGCATCATATACTGCAGCGGGGGCAGCACGGGCGGCTGATTG
TTTTTTTTATTGGGCTAAGGGCCTCTACCTGTAGGGGTTGAGATGGGGTT
TATGTACACTGACGGCTGACGATTCTTTAAGGGCGCTGGACGTAATTTGG
CTTGACATATTTATGAGGGCATGTTTCGGGTTTTTTCAAGGGGGTGTATA
TACACGGATGACTGACTTTTTTTTGTGATGCTTAACATAAGAATTAGGGC
CTGGCTTGGGGGTGTTAATGGGGTCTTGGACGGAGAGTACGACAAAAAAG
CGGCAGGGCACAACGTTCTTGGCAGGCATCACGTCGTGTGCGTAGTTATA
GTGCCAGCCGAGGGTAGTTGTAGAGGCGACACTTAATACACAATCCGGAT
TCACGAACGTGACAATCAACGGCAACAGCCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig123:522788..523668-

>mRNA_P-littoralis_Contig123.121.2 ID=mRNA_P-littoralis_Contig123.121.2|Name=mRNA_P-littoralis_Contig123.121.2|organism=Pylaiella littoralis U1_48|type=CDS|length=291bp|location=Sequence derived from alignment at P-littoralis_Contig123:522788..523668- (Pylaiella littoralis U1_48)
ATGGAGGAGAGGCTCCCGCGGAGGCCCGCGGTCAGAAGCGTGGTCTACCG
GAGGGCTTTTGAAGTATTTCCCGCCGCAGATATATTGCCAGGCCGGGCTC
TCTTCACCCGTTCGTGCGGAGGAGGAGGGGTTGTTCGGCGTCCCCGCTCC
GCTCGAGAACAAGGGCGAGAGTGGCACGAGACCTTGGTGTCAACTGCGCC
TGAACGCCAGCATCATATACTGCAGCGGGGGCAGCACGGGCGGCTGATTG
TTTTTTTTATTGGGCTAAGGGCCTCTACCTGTAGGGGTTGA
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