mRNA_P-littoralis_Contig123.70.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig123.70.1
Unique NamemRNA_P-littoralis_Contig123.70.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig123.70.1 vs. uniprot
Match: A0A6H5L8S9_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8S9_9PHAE)

HSP 1 Score: 415 bits (1066), Expect = 5.010e-127
Identity = 264/482 (54.77%), Postives = 311/482 (64.52%), Query Frame = 1 
Query: 1237 HYMVTHILGIAAFVVGTVVLVALDRRLRSHADAQAIKSRFVLLGVAVTAVFVVVVSAKFLSNFPGGEGLLCRLILVAPKPD-LGTLSAVVCTTVVVDLWARHLSIAVKAFLAIVSVPE------GSRXXXXXXXXXXXXXXX----------NSSGLCGRGRLAGCGHSSYRCRRRLGCLRRGGGTEGWGGLRRS----PHPRGGGSSMFDTDDNTRGDGSGGSSNARGDGVNGTRFSGGVRRVWRTCLCFSERFCGGPFRLWCRPTSGSDGDGG---IGGRQDGRADAADIRRAGV------------------------------LLSRAGRQRRVYAIVEMVSLLYRCLLPVPVWMEFYSKDGDYFAAIYLVLKGLEASFRTDRLVRAACYIRRGDLDRGKFATPEEVSEVGSPDCSICYDRMERPLILPCNHIFCGECVAEWLEQERTCPLCRAEVPTSNPIPKALRDGRTAIMPQIL 2520
            HY+VTH++GIAAF +GT ++V LD+RL SHA AQ +++RFVLLGVAVTAV VV +SA  LSNFP GEGLL RL+LVAPKP  LGT+SAV+ TT+VVD+WAR LS+ VKA LA+VSVP+      GS XXXXXXXXXXXXXXX          + +GL  R R A    + YR RRR   +R GG TEG G         PHPR                                R S G RR WR  LC S+ FCGGP+R         +G G    +GG+ DGR  A+    AGV                               LSR  R RRV A+VEM  +LYRCLLP P+W+EFY KD DY A IYL+LKG++ SFR DR VRAACY+RRG+LDRGK ATPEEV+E GSPDCSICYDRM RPL+LPCNH+FCGECVAEWLE+ERTCPLCRAEVP+SNPIP++LRDGRT ++PQIL
Sbjct:  310 HYIVTHLVGIAAFSMGTAIVVVLDQRLWSHAGAQTLRNRFVLLGVAVTAVVVVALSAMVLSNFPQGEGLLRRLLLVAPKPPALGTVSAVIRTTIVVDIWARLLSVTVKAVLAVVSVPDRDSSGNGSTXXXXXXXXXXXXXXXXXXXXXRVSRHGTGLFARMRSA----ALYRFRRRFS-IRAGGRTEGSGXXXXXXXXXPHPRXXXXXXXXXXXXXXXX----XXXXXXXXXXXXRLSSGARRAWRRWLCCSDWFCGGPYRF--------EGRGRYHVVGGQNDGRHSASGG--AGVEXXXXXXXXAGXXXXXXXXXXXXXGAGTVAFLSRTARLRRVNAVVEMAFVLYRCLLPAPIWLEFYGKDSDYLAGIYLLLKGMQVSFRVDRFVRAACYVRRGELDRGKLATPEEVAEAGSPDCSICYDRMSRPLLLPCNHLFCGECVAEWLERERTCPLCRAEVPSSNPIPRSLRDGRTTVVPQIL 772
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BLAST of mRNA_P-littoralis_Contig123.70.1 vs. uniprot
Match: D7FJ26_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ26_ECTSI)

HSP 1 Score: 273 bits (698), Expect = 2.280e-77
Identity = 121/155 (78.06%), Postives = 138/155 (89.03%), Query Frame = 1 
Query: 2056 LLSRAGRQRRVYAIVEMVSLLYRCLLPVPVWMEFYSKDGDYFAAIYLVLKGLEASFRTDRLVRAACYIRRGDLDRGKFATPEEVSEVGSPDCSICYDRMERPLILPCNHIFCGECVAEWLEQERTCPLCRAEVPTSNPIPKALRDGRTAIMPQIL 2520
            L S +G QRRV A+VEM  +LYRCLLP PVW+EFY KD DYFA IYLVLKG++ SFR DR VRAACY+RRG+LDRGK ATPEEV+E GSPDCSICYDRM RPL+LPCNH+FCGECVAEWLE+ERTCPLCRAEVP+SNPIP++LRDGRT ++PQIL
Sbjct:  357 LWSHSGAQRRVNAVVEMAFVLYRCLLPAPVWLEFYGKDSDYFAGIYLVLKGMQVSFRADRFVRAACYVRRGELDRGKLATPEEVAEAGSPDCSICYDRMSRPLLLPCNHLFCGECVAEWLERERTCPLCRAEVPSSNPIPRSLRDGRTTVVPQIL 511
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BLAST of mRNA_P-littoralis_Contig123.70.1 vs. uniprot
Match: A0A7S2XZV9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZV9_9STRA)

HSP 1 Score: 164 bits (415), Expect = 2.850e-43
Identity = 73/148 (49.32%), Postives = 101/148 (68.24%), Query Frame = 1 
Query: 2083 RVYAIVEMVSLLYRCLLPVPVWMEFY--SKDGDYFAAIYLVLKGLEASFRTDRLVRAACYIRRGDLDRGKFATPEEVSEVGSPDCSICYDRMERPLILPCNHIFCGECVAEWLEQERTCPLCRAEVPTSNPIPKALRDGRTAIMPQIL 2520
            ++YA++EM S++YR LLPV VW ++Y  +  G  FA  Y+++KGL  S R   LV  A    RG L+ G F TP+ ++E GSP CSIC++ M  P++L C H++C  C+ EWLE+E TCP CR++V +SN IP A RDGRT I PQ+L
Sbjct:    1 KLYALMEMTSVVYRSLLPVAVWFQYYQVNSQGQMFATFYIIMKGLLVSRRLQALVEGAMQFIRGGLEHGTFVTPDGLAEAGSPACSICFEPMSHPVMLHCRHMYCETCIEEWLERESTCPNCRSQVSSSNSIPVAFRDGRTMIFPQLL 148
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BLAST of mRNA_P-littoralis_Contig123.70.1 vs. uniprot
Match: A0A7S2S9Z2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S9Z2_9STRA)

HSP 1 Score: 146 bits (369), Expect = 5.450e-34
Identity = 69/153 (45.10%), Postives = 98/153 (64.05%), Query Frame = 1 
Query: 2077 QRRVYAIVEMVSLLYRCLLPVPVWMEFYSK--DGDYFAAIYLVLKGLEASFRTDRLVRAACYIRRGDLDRGKFATPEEVSEVGSPDCSICYDRMERPLILPCNHIFCGECVAEWLEQERTCPLCRAEVPTSNPIPKALR---DGRTAIMPQIL 2520
            ++R+Y ++E++S LYR LLP+P+W  +Y    D   F  +YL LK + AS     L          DL+ G+ A+ +EV+E G PDC ICYD M  P++LPC H+FC ECV EWLE+E+TCPLCRA+ PTS P+  + R    G T+++P +L
Sbjct:  275 KKRIYVLLELLSKLYRILLPIPMWFAYYESQDDNQVFLGVYLCLKAMVASSYLKVLFLMVKASLTTDLEIGRLASSQEVAEAGHPDCPICYDEMVSPVLLPCGHLFCEECVLEWLEREKTCPLCRADTPTS-PLLASSRGNSSGSTSLLPHVL 426
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BLAST of mRNA_P-littoralis_Contig123.70.1 vs. uniprot
Match: A0A835ZGZ2_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGZ2_9STRA)

HSP 1 Score: 137 bits (344), Expect = 1.020e-29
Identity = 77/212 (36.32%), Postives = 108/212 (50.94%), Query Frame = 1 
Query: 2074 RQRRVYAIVEMVSLLYRCLLPVPVWME----------------------------------FYSKD--GDYFAAIYLVLKGLEASFRTDRLVRAACYIRRGDLDRGKFATPEEVSEVGSPDCSICYDRMERPLILPCNHIFCGECVAE----------------------------WLEQERTCPLCRAEVPTSNPIPKALRDGRTAIMPQI 2517
            ++R+V+A +E++SLL+R ++PVPVW                                    FY  D  G+YFAA YL+ KGL  + R   L RA   + R  L+ G++ T EE    G  DCSICY+ M +P+ LPC+H+FC  C+AE                            WLE+ERTCPLCRAE  T++P+P A RDGRT+++P +
Sbjct:  398 KKRKVFAALEILSLLHRTMMPVPVWYRTRLVTLTAQRAPLSPCARSPFPPSLRATRSRRGSFYMVDAGGEYFAAAYLLFKGLVLASRARMLARALRSVFRSGLEHGRYCTGEEAQAAG--DCSICYEAMTQPVKLPCDHMFCEVCLAESLSSCYVCFRLQFANPVLHVSFASRDSEWLERERTCPLCRAETTTTDPLPTAFRDGRTSLLPVV 607
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BLAST of mRNA_P-littoralis_Contig123.70.1 vs. uniprot
Match: A0A0N7L3T6_PLAHL (RING-type domain-containing protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L3T6_PLAHL)

HSP 1 Score: 131 bits (329), Expect = 6.540e-28
Identity = 69/158 (43.67%), Postives = 96/158 (60.76%), Query Frame = 1 
Query: 2074 RQRRVYAIVEMVSLLYRCLLPVPVWMEFYSKDG-----DYFAAIYLVLKGLEASFRTDRLVRAACYIRRGDLDRGKFATPEEVSEVGSPDCSICYDRMERPLILPCNHIFCGECVAEWLEQERTCPLCRAEV----PTSNPIPKALRDGRTAIMPQIL 2520
            R+R++Y ++EM S+  R LL    W   Y         D F   YLV+KGL  + +  R++  A   ++  L+ G +   +EV E GSPDCSICY+RM +P+ L C+HIFC ECV EW + ER+CPLCRA V      +N  PK L DGRT+++PQ+L
Sbjct:  434 RKRKLYGLIEMCSIFLRSLLASIPWCSLYQVCASKFMADVFTFAYLVIKGLILAAQGRRIIILARSFKKLGLEFGVYVPHDEVVESGSPDCSICYERMRQPVKLACSHIFCEECVTEWFDHERSCPLCRATVGGTSDDANVKPKFL-DGRTSLVPQLL 590
[Close]
BLAST of mRNA_P-littoralis_Contig123.70.1 vs. uniprot
Match: A0A485LBL2_9STRA (Aste57867_18787 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LBL2_9STRA)

HSP 1 Score: 125 bits (314), Expect = 1.380e-26
Identity = 65/159 (40.88%), Postives = 92/159 (57.86%), Query Frame = 1 
Query: 2074 RQRRVYAIVEMVSLLYRCLLPVPVWMEFYSKD-----GDYFAAIYLVLKGLEASFRTDR---LVRAACYIRRGDLDRGKFATPEEVSEVGSPDCSICYDRMERPLILPCNHIFCGECVAEWLEQERTCPLCRAEV--PTSNPIPKALRDGRTAIMPQIL 2520
            R+R++YA VE  +L  R  +    W  FY        GD F  +YL  KG   + +  R   ++RAA  +    L+ G +  P ++ E GSP+CSICYD M+ P+ LPC H+FC ECV EW ++ER+CPLCRA+V  P + P+     DG T++ PQ L
Sbjct:  317 RKRKIYAAVEFTTLFLRSAVAALPWCAFYQASASKMVGDVFTVVYLSFKGFVLAGQARRVLTILRAALTLH---LEYGTYVGPTDLVEAGSPECSICYDTMQVPVQLPCAHMFCEECVCEWFDRERSCPLCRADVISPANKPL---YMDGGTSLFPQFL 469
[Close]
BLAST of mRNA_P-littoralis_Contig123.70.1 vs. uniprot
Match: A0A8J5IQJ7_9STRA (RING-type domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5IQJ7_9STRA)

HSP 1 Score: 122 bits (306), Expect = 2.460e-26
Identity = 65/160 (40.62%), Postives = 97/160 (60.62%), Query Frame = 1 
Query: 2074 RQRRVYAIVEMVSLLYRCLLPVPVWMEFYSKDG-----DYFAAIYLVLKGLEASFRTDRL-VRAACYIRRGDLDRGKFATPEEVSEVGSPDCSICYDRMERPLILPCNHIFCGECVAEWLEQERTCPLCRAEVPTS-----NPIPKALRDGRTAIMPQIL 2520
            R+R++Y ++EM S+  R LL    W  FY         D F   Y+ +KGL  + +  R+ + A  ++  G L+ G + + +E+ E GSPDCSICY+ M +P+ L C+H+FC ECV EW + ER+CPLCRA V +      N  P+ L DGRT+++PQ+L
Sbjct:  200 RKRKLYGLIEMCSIFLRSLLASIPWCSFYQLCASKFMADVFTFAYVFIKGLILATQGRRIFILARSFVTLG-LEFGVYVSHDELVEAGSPDCSICYETMRQPVKLACSHMFCEECVTEWFDHERSCPLCRASVGSGSSEEENVKPQFL-DGRTSLVPQLL 357
[Close]
BLAST of mRNA_P-littoralis_Contig123.70.1 vs. uniprot
Match: A0A225W345_9STRA (RING-type domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225W345_9STRA)

HSP 1 Score: 125 bits (313), Expect = 4.330e-26
Identity = 68/160 (42.50%), Postives = 98/160 (61.25%), Query Frame = 1 
Query: 2074 RQRRVYAIVEMVSLLYRCLLPVPVWMEFYSKDG-----DYFAAIYLVLKGLEASFRTDRL-VRAACYIRRGDLDRGKFATPEEVSEVGSPDCSICYDRMERPLILPCNHIFCGECVAEWLEQERTCPLCRAEVPTS-----NPIPKALRDGRTAIMPQIL 2520
            R+R++Y I+EM S+  R LL    W  FY         D F   YL +KGL  + +  R+ V A  ++  G L+ G + + +E+ E GSPDCSICY+ M++P+ L C+H+FC ECV EW + ER+CPLCRA V +      N  P+ L DGRT+++PQ+L
Sbjct:  387 RKRKLYGIIEMCSIFLRSLLASIPWCSFYQLCASKFMADVFTFAYLFIKGLILATQGRRIFVLAHSFVTLG-LEFGVYVSHDELVEAGSPDCSICYETMQQPVKLACSHMFCEECVTEWFDHERSCPLCRASVGSGLTAEENVKPQFL-DGRTSLVPQLL 544
[Close]
BLAST of mRNA_P-littoralis_Contig123.70.1 vs. uniprot
Match: D0MSP0_PHYIT (RING-type domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=D0MSP0_PHYIT)

HSP 1 Score: 124 bits (312), Expect = 5.290e-26
Identity = 62/158 (39.24%), Postives = 93/158 (58.86%), Query Frame = 1 
Query: 2074 RQRRVYAIVEMVSLLYRCLLPVPVWMEFYSKDG-----DYFAAIYLVLKGLEASFRTDRLVRAACYIRRGDLDRGKFATPEEVSEVGSPDCSICYDRMERPLILPCNHIFCGECVAEWLEQERTCPLCRAEVPTSNPIPKALR----DGRTAIMPQIL 2520
            R+R++Y ++EM S+  R LL    W  FY         D F   Y+ +KGL  + +  R+   A       L+ G + T +E+ E GSPDCSICY+ M +P+ L C+H+FC ECV EW + ER+CPLCRA V +     ++++    DGRT+++PQ+L
Sbjct:  378 RKRKLYGLIEMCSIFLRSLLASIPWCSFYQLCASKFMADVFTFAYVFIKGLILATQGRRIFNLARSFVTLGLEFGVYVTHDELVEAGSPDCSICYETMRQPVKLACSHMFCEECVTEWFDHERSCPLCRASVGSGPSAEESVKPHFLDGRTSLVPQLL 535
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig123.70.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L8S9_9PHAE5.010e-12754.77RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FJ26_ECTSI2.280e-7778.06RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A7S2XZV9_9STRA2.850e-4349.32Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2S9Z2_9STRA5.450e-3445.10Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A835ZGZ2_9STRA1.020e-2936.32RING-type domain-containing protein n=1 Tax=Tribon... [more]
A0A0N7L3T6_PLAHL6.540e-2843.67RING-type domain-containing protein n=1 Tax=Plasmo... [more]
A0A485LBL2_9STRA1.380e-2640.88Aste57867_18787 protein n=1 Tax=Aphanomyces stella... [more]
A0A8J5IQJ7_9STRA2.460e-2640.63RING-type domain-containing protein n=1 Tax=Phytop... [more]
A0A225W345_9STRA4.330e-2642.50RING-type domain-containing protein n=1 Tax=Phytop... [more]
D0MSP0_PHYIT5.290e-2639.24RING-type domain-containing protein n=2 Tax=Phytop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig123contigP-littoralis_Contig123:357635..363529 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FJ26
PFAMsSH3_1,ZZ,zf-C3HC4,zf-C3HC4_2,zf-C3HC4_3,zf-RING_2,zf-RING_UBOX
Model size3208
Max annot lvl2759|Eukaryota
KEGG koko:K22379
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0008270,GO:0043167,GO:0043169,GO:0046872,GO:0046914
Exons9
Evalue7.54e-81
EggNOG OGsCOG5243@1|root,KOG0802@2759|Eukaryota
EC2.3.2.27
Descriptionprotein polyubiquitination
Cds size2175
COG categoryO
BRITEko00000,ko01000,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig123.70.1prot_P-littoralis_Contig123.70.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig123 358504..362844 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789535.6790245-UTR-P-littoralis_Contig123:357634..3578401680789535.6790245-UTR-P-littoralis_Contig123:357634..357840Pylaiella littoralis U1_48UTRP-littoralis_Contig123 357635..357840 +
1680789535.6900465-UTR-P-littoralis_Contig123:358361..3585031680789535.6900465-UTR-P-littoralis_Contig123:358361..358503Pylaiella littoralis U1_48UTRP-littoralis_Contig123 358362..358503 +
1680789535.8079243-UTR-P-littoralis_Contig123:362844..3635291680789535.8079243-UTR-P-littoralis_Contig123:362844..363529Pylaiella littoralis U1_48UTRP-littoralis_Contig123 362845..363529 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789535.706011-CDS-P-littoralis_Contig123:358503..3593021680789535.706011-CDS-P-littoralis_Contig123:358503..359302Pylaiella littoralis U1_48CDSP-littoralis_Contig123 358504..359302 +
1680789535.7189574-CDS-P-littoralis_Contig123:359506..3596971680789535.7189574-CDS-P-littoralis_Contig123:359506..359697Pylaiella littoralis U1_48CDSP-littoralis_Contig123 359507..359697 +
1680789535.7313375-CDS-P-littoralis_Contig123:359928..3600251680789535.7313375-CDS-P-littoralis_Contig123:359928..360025Pylaiella littoralis U1_48CDSP-littoralis_Contig123 359929..360025 +
1680789535.7448945-CDS-P-littoralis_Contig123:360328..3609721680789535.7448945-CDS-P-littoralis_Contig123:360328..360972Pylaiella littoralis U1_48CDSP-littoralis_Contig123 360329..360972 +
1680789535.7553027-CDS-P-littoralis_Contig123:361139..3612651680789535.7553027-CDS-P-littoralis_Contig123:361139..361265Pylaiella littoralis U1_48CDSP-littoralis_Contig123 361140..361265 +
1680789535.7701187-CDS-P-littoralis_Contig123:361685..3617541680789535.7701187-CDS-P-littoralis_Contig123:361685..361754Pylaiella littoralis U1_48CDSP-littoralis_Contig123 361686..361754 +
1680789535.782828-CDS-P-littoralis_Contig123:362359..3624961680789535.782828-CDS-P-littoralis_Contig123:362359..362496Pylaiella littoralis U1_48CDSP-littoralis_Contig123 362360..362496 +
1680789535.7959824-CDS-P-littoralis_Contig123:362732..3628441680789535.7959824-CDS-P-littoralis_Contig123:362732..362844Pylaiella littoralis U1_48CDSP-littoralis_Contig123 362733..362844 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig123.70.1

>prot_P-littoralis_Contig123.70.1 ID=prot_P-littoralis_Contig123.70.1|Name=mRNA_P-littoralis_Contig123.70.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=725bp
MVAPSANARGECEQQQQQQQQQQQLSSLLQTDGSGESAGPTATAAVTSSA
DAAGACSRREGVAPAMFAAAPVSARTVSASEPVVTQHGLPRATAMMTGNV
GSSNARSRVLTSGEVGHARRGSRRGFTSSSDGPRRGVLPSFQEAVAAAAA
AAAAAGETSPTAPARAQGSSTRRSDENEDSEDQREQNFREMERGGMERAR
GLDQGERGDHHPSAVQGSSGLRFALAGGAGEDRASTGSVMEPNYSDGESS
SPGSSGSGSGGDASSDPVVAGSPPEEIRRVLASSHNTIALLLLLLLHYMV
THILGIAAFVVGTVVLVALDRRLRSHADAQAIKSRFVLLGVAVTAVFVVV
VSAKFLSNFPGGEGLLCRLILVAPKPDLGTLSAVVCTTVVVDLWARHLSI
AVKAFLAIVSVPEGSRGSEGSSGGAGGGSNSNSSGLCGRGRLAGCGHSSY
RCRRRLGCLRRGGGTEGWGGLRRSPHPRGGGSSMFDTDDNTRGDGSGGSS
NARGDGVNGTRFSGGVRRVWRTCLCFSERFCGGPFRLWCRPTSGSDGDGG
IGGRQDGRADAADIRRAGVLLSRAGRQRRVYAIVEMVSLLYRCLLPVPVW
MEFYSKDGDYFAAIYLVLKGLEASFRTDRLVRAACYIRRGDLDRGKFATP
EEVSEVGSPDCSICYDRMERPLILPCNHIFCGECVAEWLEQERTCPLCRA
EVPTSNPIPKALRDGRTAIMPQIL*
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mRNA from alignment at P-littoralis_Contig123:357635..363529+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig123.70.1 ID=mRNA_P-littoralis_Contig123.70.1|Name=mRNA_P-littoralis_Contig123.70.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5895bp|location=Sequence derived from alignment at P-littoralis_Contig123:357635..363529+ (Pylaiella littoralis U1_48)
GGTAATAAATATTCCAAGCACATTGTTTCTCTCTTTGTACTTTGGACACA
AACGGAGGACGAATGAGAGGGAACCAAACATTCAGATCTCGCGGGACGCC
CCCCCTTGTAAATGCTGTAGGACCCGCCCTTACCTGAGGCTTGCCAACAG
CAGTATCATACTGAGGGTTGCCAACAGCGTTGTCATACTCCACGAGAAAA
CCGACGGTGAGTAGAAGGTTTGGAAGATGGGAAACAGCAGTACACCAATA
CTGAAGTCAGTTTTACAGTTTTACAGCATGCTCTGAACGGTCAGGCGCCT
GCCGTGCACGCCCTGTCCTCGACAAAACCACACACCTGCGGCGGGATGGA
AGTCAGTTTATTTTGTTGAAAACCTAGACTTCCTCACGGCAAAGTCTTTT
TATTATGTGATCCCTGGTGGTCGGTTAGGATATCATAGCGCAGTCGTATA
ATAGCTGGTATGCATGGTACACGTATTTGCTGCGGAGCAGATTGAGTGTA
CAATGTGGGTTCAAAGTGTCCGTTGAGCAATATTTGAACATCAAACACGG
TATATCGGGTACGGTAACGAGAAGTGCGAGCTTCGTATCATATATCGTTC
AAACCGTCCCGTTTACTGCTTTGTTGCGGGGACACTGCCTTGGGCGGAAA
CATGCTTACTGGGGTGCAGATGTTAAGGTGAACTATTCCTTGTATACGTA
CTGATGTGATCCCCGTATATACAGCAGGGATACGAACGCTGACGACGCCA
ACGGACAGGATGCGGCTGCGCCTCTCTTACCACAAGCATCAACCGGCGAC
GGTACCCGACCCGATGCAGCATTCCTAGCAGGGGTGGCAGCAGCAGCACG
GAGAGAAAAGGCCAGGGGAATGGTGGCCCCCTCTGCTAACGCACGCGGCG
AGTGTGAACAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAACTCTCTAGT
CTGCTACAGACCGATGGCTCAGGGGAGAGTGCAGGCCCCACTGCTACTGC
AGCTGTAACTTCGTCTGCTGACGCAGCAGGAGCTTGTTCGAGGAGAGAGG
GAGTCGCCCCGGCCATGTTCGCGGCCGCCCCCGTCTCCGCACGAACTGTG
TCCGCATCTGAACCCGTGGTGACACAACACGGCTTGCCACGGGCGACGGC
GATGATGACAGGCAATGTTGGCAGCAGCAACGCTAGGAGCAGGGTATTGA
CTTCTGGTGAAGTTGGCCACGCTCGGCGTGGGTCACGGCGTGGGTTTACG
AGTAGCAGCGATGGACCGCGTCGAGGTGTTTTGCCAAGTTTTCAAGAAGC
AGTGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAGAAACATCACCAA
CAGCACCAGCAAGGGCACAAGGTAGTAGCACCAGAAGGAGTGATGAGAAT
GAAGACAGCGAGGACCAAAGAGAGCAAAATTTTCGAGAGATGGAAAGGGG
GGGCATGGAGAGGGCTAGGGGTCTCGATCAAGGAGAGAGGGGTGACCACC
ACCCTTCGGCGGTGCAGGGGTCTTCGGGTTTGCGTTTTGCCTTGGCCGGG
GGGGCGGGAGAAGACAGGGCGTCGACAGGGAGCGTGATGGAGCCGAACTA
CAGTGACGGTGAATCGAGCAGCCCGGGCTCGTCGGGAAGTGGAAGTGGAG
GGGACGCTTCTTCCGATCGTGAGAGCGTCTCTTGTCGTAGATGTTTCTAA
ACCTTACCTCATATGGCAACTCTCTCGTAATGGGCGTACCTAGTAGGAGG
GGCATTTGGCTTCTAAGCTTGACCAGTTTCTAGCGGCGAATATTTTTTCC
GGGAATAGGATGAAACTAGTCGTTGCTGCATCCTCCGTGTTACCTGCTCC
ATGCACTGCTGTTCTGCTGAAGCCGTGGTGGCAGGTAGCCCGCCTGAGGA
AATCAGGCGGGTGCTGGCGAGCTCCCACAACACGATCGCCCTCCTCCTGC
TGCTCCTGCTGCACTATATGGTGACCCACATCTTGGGGATCGCGGCCTTC
GTCGTGGGGACGGTCGTTCTCGTCGCCCTGGACCGACGGCTTCGCTCCCA
CGCCGACGCGCAGGTACAAACCAAACCGCGCTTTGGGAAGCCTCAGCTGT
GCAACTTTTTCTCTTTTCGGAGGTTACGTACTCCAGCCCTTTGTACAGTA
CAAAGGAGCTGTTCGGCTTGCAGACTTTTGGTGAGAACCTACGCAACGAT
ACAGCAGCATGTCTAAGAATGAATCACAACCCAATTGTTTTCGTGAAACC
CCCACCCCCACCACCACCCCCACCCCCACCCCCCATCCCTGCAGGCTATT
AAAAGCCGGTTTGTGCTTTTGGGCGTGGCAGTGACAGCGGTGTTCGTCGT
GGTCGTATCCGCAAAGTTCCTCTCCAATTTTCCAGGGGGAGGTACGCCGA
CGTGCATGTTTCCATCGTTTGTCAAGCTAACGTGTCACCATGTTGTGCAC
AGCTATTCGTCTTTGGCATGCTCAGCGACGTTCACGTGTAAACAGCAGTA
GTCCTTCTAAGATGTTACCCCTTACACCTGAGGGCTTCTTCCACGAGATG
CTCTTTATAGTTATACATTTTGAGACACCTCGATGTATTACTGGGTGTTT
TTCCCGCCCGCTATTCACCACCCCTACACTTCTTCCCTCCCCGTAATTAT
CATCCTCCACGACGTAAATAACTGGGTGGTAACCAACTTTACAGAAGGGC
TTCTCTGCAGACTCATTTTGGTAGCTCCGAAGCCGGACCTGGGCACCCTC
TCTGCCGTGGTTTGCACCACCGTTGTGGTCGACCTGTGGGCTCGCCACCT
CAGCATAGCGGTCAAAGCTTTCCTAGCTATCGTTTCCGTGCCTGAAGGCA
GTAGAGGCAGCGAAGGTAGCAGCGGCGGCGCTGGCGGTGGTAGCAATAGC
AACTCTTCAGGGCTGTGCGGCAGGGGGCGGCTTGCCGGATGTGGCCACTC
CTCTTACCGCTGCCGTCGTAGGCTCGGTTGCCTGCGACGAGGCGGTGGGA
CGGAGGGGTGGGGGGGGCTCAGACGGTCTCCGCATCCACGGGGTGGAGGA
AGCTCGATGTTTGACACAGACGACAACACCAGGGGCGACGGCAGTGGTGG
TAGCAGTAATGCCAGAGGTGACGGTGTTAATGGAACCCGATTTTCAGGCG
GCGTACGACGCGTTTGGAGGACCTGTCTGTGTTTTTCAGAAAGATTTTGC
GGTGGGCCGTTTCGGTTGTGGTGTCGTCCGACATCGGGCAGTGACGGCGA
TGGCGGAATCGGGGGGCGTCAAGACGGGAGAGCAGATGCTGCAGACATAC
GCAGAGCTGGGGTCTTGCTAAGTCGGGCTGGAAGACAGGCGAGGCATTGC
CAAAGGCAGCGTGGTGCCATGTGTGTCGAGAGGAATATTTGGCGATGTTT
TTCAATGTCATTTTTCGACACCCTCAAGGTTATGACAAATGAAAGCTCTA
CTGAGCACCGTCGCTGACCCCAACAATACGTTTTTTTTGCTCGCGGGGCG
TACAGCGGAGAGTGTACGCTATTGTGGAAATGGTGTCCCTGCTATACCGG
TGTCTGCTGCCGGTACCTGTCTGGATGGAGTTTTATAGCAAGGATGGCGA
CTATTTTGCGGCGATTTATCTTGTCCTCAAGGTGAGATATGTATCTCTCC
CAACGGTCGTGAACGCTCAAAACGTGTTTCGTTGTTACCGTCCGTATTGG
CCTGAGAACTGCAGTGCCGGTTAACGTGTGGTACGAACCAAGGGGGTCGT
CGTGCAATGAACCCCCGTCGAACTGACGCCGAGTACGTTCACAATTTTCT
TTCTACACCATTACATCAACCCGCACAAACGTGTTTCGTATGCACCTGAG
TGATTTAAAGTGGGTGACCCCCAACCACGAACCCGGAGCTATACAGGAGA
GTAACGCCTCCGTGTTTTTTTTTTTAATGATTTTGGCAATGTTGGACCTG
AATACTACCAGCACCTGTTGAGCTGACTTTCAAACTCGTGTTTTCTTCCG
CCTCCCTCCCCCCGACCATGGCTTTGGTTTCCGGCGTTTTCCTGGCACAA
GGGCCTGGAGGCATCGTTTCGGACAGATCGCCTTGTGAGAGCTGCATGCT
ACATCCGACGGGGAGACTTGGTGAGCTCCATGTGCGCTGCTCTGTACCGC
AATGGAAAAGAGCTCACAGCATAGAGAAGCTCATGAAACCTCGGCCCAGC
CGTGATTTTATTGTCTTGTGACGCGTACCCACACCTGTTTGATACTCATA
TGAGCACGCTTGTTGGAATGCTCAGCCTCATGTCCTGTCTTGCCCGTCTG
CCATTTTGAGGAGGGTTATCAATTCTTCGGCGACTTCGTTATTTTTGTAA
TCAACCAGGTGACATATACAAAGTTGTCGTTTGCGTCGGAGATGTATTTT
GGTGAAGGCAGTTGGTTAAAGGTGGTTGATTAACGCCGTTGTTCGCAAAG
CCCTGTTGTTGGCTGCAGACCACGTGTCCTAGAACTTATGCTCAAAAGTG
TGATCATCCTTCGTAGTACTCGTGTATATCCCATCACGACATTGTCTGTG
CTGATCAACTCCAGTGTGTGTAGTTTGCAGACCTAGGTACCCTCGGTTCG
TTTAAATCACGTAGTCGTCCTTAAGTACACACCGCTCTCGCCGGCGTGAA
GCATTGACAAACTCACTTACCTTCTTCCGGTGCTATTGCACCATGTAACG
TCGTGCTCTGGTCGCATCACTCAAGGATCGAGGAAAGTTTGCAACGCCGG
AAGAGGTATCGGAAGTGGGATCGCCGGATTGTTCTATTTGCTACGACCGA
ATGGAGCGACCGTTAATCCTGCCGTGCAATCACATTTTCTGCGGCGAATG
CGTCGCGGAATGGTGAGAGCCTAGCTGCGAGTCTCCGCCTGCATCACCGC
AGTTTTGATCTTTTTTTTACGAGGAACGTACCGATGAAAATTGTATTTGC
CATGAAATTGTCGGCGAGACTTCTTCGCCCAATCGCCTCCCTCCGCCCTG
TTTTTTTCTTCGTGTGTTTGTGTGAGTTTCGTTTTTCCTGCATGCCGTTG
GTTTTCTCACTTTTCCATTTTTTCCTTGCGCTCAAACGTCACTATTAGGC
TTGAGCAAGAGCGTACGTGCCCCCTCTGCCGGGCGGAGGTGCCCACGTCC
AACCCGATCCCCAAGGCTCTTCGAGATGGCCGGACAGCCATCATGCCGCA
GATTCTCTGAAGATATGATAGGGGGATTTCGATCGGATTGGTGTCTGCCC
AGGGCAAAGAGCAGCGGATGTGCCTATGACACCGTCGTATCTCTGGTCAG
CGGGTCTATCACCGGATGGTATGGCGCTCGCGCATGTTGCAGGAGCAACC
CGTCTGGTCTTATTTTTCCCGTCGCCGCCGTGTGTTGGGCGATGATGGGG
ACTGATTCACTACTTTTCTGTCACCGGTATGACCGTCTGGTTGGGGGGTG
AGGGGCGGGCAGTGCGCATCGTGCAGATAATTTTCTATAGGTCGGGCCTG
GTGATGCCAGCTGATGATTCTTCGTGGCTGTTTTTTTGCGATAGCTGTGG
TGCGAAATTATGTACGAAGTGTAGGTTTGGTGTAGTAATTCTCCTTTGTG
CGATGATTTATTACAGGACGTGTTGATGCTGCTGTTCCAGGTTGTGTTTT
GTCTTGGGCAAAGGCAAGGCCGTACAATTTGTGTTTTGTGTGAAAAGTCC
ACAAGCTAATTCAAGTCTTTCGGCATCCCATCCGCTCTTCGCCGGAAAAG
TGTGTGTTGTGACATGATGTTTACGAACATTGATTAATGTTTGTGACAAT
AAACATACCATGCATGAGCCGCCAGCACCCGTCCGCGGGCCTTTTTGCGT
GAAGCGCTCTTTTCACCAGCACGCTTGCGGTATTCTGAACTACTT
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Coding sequence (CDS) from alignment at P-littoralis_Contig123:357635..363529+

>mRNA_P-littoralis_Contig123.70.1 ID=mRNA_P-littoralis_Contig123.70.1|Name=mRNA_P-littoralis_Contig123.70.1|organism=Pylaiella littoralis U1_48|type=CDS|length=2175bp|location=Sequence derived from alignment at P-littoralis_Contig123:357635..363529+ (Pylaiella littoralis U1_48)
ATGGTGGCCCCCTCTGCTAACGCACGCGGCGAGTGTGAACAGCAACAGCA
GCAGCAGCAGCAGCAGCAGCAACTCTCTAGTCTGCTACAGACCGATGGCT
CAGGGGAGAGTGCAGGCCCCACTGCTACTGCAGCTGTAACTTCGTCTGCT
GACGCAGCAGGAGCTTGTTCGAGGAGAGAGGGAGTCGCCCCGGCCATGTT
CGCGGCCGCCCCCGTCTCCGCACGAACTGTGTCCGCATCTGAACCCGTGG
TGACACAACACGGCTTGCCACGGGCGACGGCGATGATGACAGGCAATGTT
GGCAGCAGCAACGCTAGGAGCAGGGTATTGACTTCTGGTGAAGTTGGCCA
CGCTCGGCGTGGGTCACGGCGTGGGTTTACGAGTAGCAGCGATGGACCGC
GTCGAGGTGTTTTGCCAAGTTTTCAAGAAGCAGTGGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGGAGAAACATCACCAACAGCACCAGCAAGGGCACA
AGGTAGTAGCACCAGAAGGAGTGATGAGAATGAAGACAGCGAGGACCAAA
GAGAGCAAAATTTTCGAGAGATGGAAAGGGGGGGCATGGAGAGGGCTAGG
GGTCTCGATCAAGGAGAGAGGGGTGACCACCACCCTTCGGCGGTGCAGGG
GTCTTCGGGTTTGCGTTTTGCCTTGGCCGGGGGGGCGGGAGAAGACAGGG
CGTCGACAGGGAGCGTGATGGAGCCGAACTACAGTGACGGTGAATCGAGC
AGCCCGGGCTCGTCGGGAAGTGGAAGTGGAGGGGACGCTTCTTCCGATCC
CGTGGTGGCAGGTAGCCCGCCTGAGGAAATCAGGCGGGTGCTGGCGAGCT
CCCACAACACGATCGCCCTCCTCCTGCTGCTCCTGCTGCACTATATGGTG
ACCCACATCTTGGGGATCGCGGCCTTCGTCGTGGGGACGGTCGTTCTCGT
CGCCCTGGACCGACGGCTTCGCTCCCACGCCGACGCGCAGGCTATTAAAA
GCCGGTTTGTGCTTTTGGGCGTGGCAGTGACAGCGGTGTTCGTCGTGGTC
GTATCCGCAAAGTTCCTCTCCAATTTTCCAGGGGGAGAAGGGCTTCTCTG
CAGACTCATTTTGGTAGCTCCGAAGCCGGACCTGGGCACCCTCTCTGCCG
TGGTTTGCACCACCGTTGTGGTCGACCTGTGGGCTCGCCACCTCAGCATA
GCGGTCAAAGCTTTCCTAGCTATCGTTTCCGTGCCTGAAGGCAGTAGAGG
CAGCGAAGGTAGCAGCGGCGGCGCTGGCGGTGGTAGCAATAGCAACTCTT
CAGGGCTGTGCGGCAGGGGGCGGCTTGCCGGATGTGGCCACTCCTCTTAC
CGCTGCCGTCGTAGGCTCGGTTGCCTGCGACGAGGCGGTGGGACGGAGGG
GTGGGGGGGGCTCAGACGGTCTCCGCATCCACGGGGTGGAGGAAGCTCGA
TGTTTGACACAGACGACAACACCAGGGGCGACGGCAGTGGTGGTAGCAGT
AATGCCAGAGGTGACGGTGTTAATGGAACCCGATTTTCAGGCGGCGTACG
ACGCGTTTGGAGGACCTGTCTGTGTTTTTCAGAAAGATTTTGCGGTGGGC
CGTTTCGGTTGTGGTGTCGTCCGACATCGGGCAGTGACGGCGATGGCGGA
ATCGGGGGGCGTCAAGACGGGAGAGCAGATGCTGCAGACATACGCAGAGC
TGGGGTCTTGCTAAGTCGGGCTGGAAGACAGCGGAGAGTGTACGCTATTG
TGGAAATGGTGTCCCTGCTATACCGGTGTCTGCTGCCGGTACCTGTCTGG
ATGGAGTTTTATAGCAAGGATGGCGACTATTTTGCGGCGATTTATCTTGT
CCTCAAGGGCCTGGAGGCATCGTTTCGGACAGATCGCCTTGTGAGAGCTG
CATGCTACATCCGACGGGGAGACTTGGATCGAGGAAAGTTTGCAACGCCG
GAAGAGGTATCGGAAGTGGGATCGCCGGATTGTTCTATTTGCTACGACCG
AATGGAGCGACCGTTAATCCTGCCGTGCAATCACATTTTCTGCGGCGAAT
GCGTCGCGGAATGGCTTGAGCAAGAGCGTACGTGCCCCCTCTGCCGGGCG
GAGGTGCCCACGTCCAACCCGATCCCCAAGGCTCTTCGAGATGGCCGGAC
AGCCATCATGCCGCAGATTCTCTGA
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