mRNA_P-littoralis_Contig1.330.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1.330.1
Unique NamemRNA_P-littoralis_Contig1.330.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1.330.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1contigP-littoralis_Contig1:1484959..1485441 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size483
Hectar predicted targeting categoryother localisation
Exons1
Cds size327
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789309.1425545-UTR-P-littoralis_Contig1:1484958..14850611680789309.1425545-UTR-P-littoralis_Contig1:1484958..1485061Pylaiella littoralis U1_48UTRP-littoralis_Contig1 1484959..1485061 -
1680789309.1616476-UTR-P-littoralis_Contig1:1485388..14854411680789309.1616476-UTR-P-littoralis_Contig1:1485388..1485441Pylaiella littoralis U1_48UTRP-littoralis_Contig1 1485389..1485441 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789309.1522584-CDS-P-littoralis_Contig1:1485061..14853881680789309.1522584-CDS-P-littoralis_Contig1:1485061..1485388Pylaiella littoralis U1_48CDSP-littoralis_Contig1 1485062..1485388 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1.330.1prot_P-littoralis_Contig1.330.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1 1485062..1485388 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1.330.1

>prot_P-littoralis_Contig1.330.1 ID=prot_P-littoralis_Contig1.330.1|Name=mRNA_P-littoralis_Contig1.330.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=109bp
MYTAVCIFPLSWKENDCFWVPDGNTMHVRSKQGGRIQYFVWFPPRWESSP
TDRALYIFFCFCIYFEVYRATYCTAAALIPGDVLLVFNLLALFTYIFIRS
VCLWSMQV*
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mRNA from alignment at P-littoralis_Contig1:1484959..1485441-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1.330.1 ID=mRNA_P-littoralis_Contig1.330.1|Name=mRNA_P-littoralis_Contig1.330.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=483bp|location=Sequence derived from alignment at P-littoralis_Contig1:1484959..1485441- (Pylaiella littoralis U1_48)
TGACCTTGGCGAATTAATTTTTATTTTTAATTATTTTAATTTTTACGATA
TACATGTATACTGCTGTGTGTATCTTTCCACTTTCTTGGAAAGAAAACGA
TTGCTTTTGGGTGCCGGATGGAAATACGATGCATGTCCGATCAAAGCAGG
GGGGGAGAATCCAATACTTTGTATGGTTTCCCCCGAGATGGGAAAGCTCG
CCCACGGACCGCGCCCTGTACATTTTTTTTTGTTTTTGCATTTATTTTGA
GGTGTACAGGGCAACTTACTGCACGGCGGCCGCACTAATCCCAGGCGATG
TTTTGTTGGTCTTTAACTTGTTGGCACTATTTACTTACATTTTTATTCGA
TCTGTCTGTCTGTGGTCGATGCAAGTGTAAACCATATCAACTCCTGCGTG
ACTGCGTGATCGGTGGTTTTTCTAGGAGGGAGGGACGCAGCAGGGTTTTC
AACACTTTACATGCGCGCTGCATTGTGGCGGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1:1484959..1485441-

>mRNA_P-littoralis_Contig1.330.1 ID=mRNA_P-littoralis_Contig1.330.1|Name=mRNA_P-littoralis_Contig1.330.1|organism=Pylaiella littoralis U1_48|type=CDS|length=327bp|location=Sequence derived from alignment at P-littoralis_Contig1:1484959..1485441- (Pylaiella littoralis U1_48)
ATGTATACTGCTGTGTGTATCTTTCCACTTTCTTGGAAAGAAAACGATTG
CTTTTGGGTGCCGGATGGAAATACGATGCATGTCCGATCAAAGCAGGGGG
GGAGAATCCAATACTTTGTATGGTTTCCCCCGAGATGGGAAAGCTCGCCC
ACGGACCGCGCCCTGTACATTTTTTTTTGTTTTTGCATTTATTTTGAGGT
GTACAGGGCAACTTACTGCACGGCGGCCGCACTAATCCCAGGCGATGTTT
TGTTGGTCTTTAACTTGTTGGCACTATTTACTTACATTTTTATTCGATCT
GTCTGTCTGTGGTCGATGCAAGTGTAA
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