mRNA_P-littoralis_Contig123.69.7 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig123.69.7
Unique NamemRNA_P-littoralis_Contig123.69.7
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig123.69.7 vs. uniprot
Match: D7FJ25_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ25_ECTSI)

HSP 1 Score: 138 bits (347), Expect = 3.270e-38
Identity = 88/149 (59.06%), Postives = 108/149 (72.48%), Query Frame = 1 
Query:  175 DDDFSLS----FSLPGASTGKDKAAAAKLAKKKAARSFHSSSSGLDALIAESKRDAVRSEKVRTILDLGDGILAKDLGRMDEQKARTDATEAKDKATHKAIMEDTSIKVAGVIRVFGRPQCQALPDLQFSAPSPAGELSVLFEAVKQSG 609
            DDDF +     FS PG S GKDKA++ +  KKK+  SF S   GLDAL+AES  +A RSEK+  I++L + IL KDL + ++QKARTDA EAKDKA HKAIMEDTSI++ GVIRVF +P+ Q  PDL+F  P P GELSVL EAVK +G
Sbjct:    5 DDDFDMPDSTLFSRPG-SKGKDKASSTQN-KKKSTPSFMS---GLDALVAESTLNAERSEKISEIMNLAEDILEKDLLKTEQQKARTDAAEAKDKADHKAIMEDTSIRIPGVIRVFRQPEEQGPPDLRFEPPQPEGELSVLAEAVKLAG 148
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BLAST of mRNA_P-littoralis_Contig123.69.7 vs. uniprot
Match: A0A6H5L5V2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5V2_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 3.370e-37
Identity = 90/146 (61.64%), Postives = 108/146 (73.97%), Query Frame = 1 
Query:  175 DDDFSLS----FSLPGASTGKDKAAAAKLAKKKAARSFHSSSSGLDALIAESKRDAVRSEKVRTILDLGDGILAKDLGRMDEQKARTDATEAKDKATHKAIMEDTSIKVAGVIRVFGRPQCQALPDLQFSAPSPAGELSVLFEAVK 600
            DDDF +     FS PG S  KDKA+AA+  KKK+  SF S   GLDAL+AES  +A RSEK+  I++LG+ IL KDL + ++QKARTDA EAKDKA HKAIMEDTSI++ GVIRVF +P+ Q  PDL+F  P PAGELSVL EAVK
Sbjct:    5 DDDFDMPDSTLFSRPG-SKDKDKASAAQN-KKKSTPSFMS---GLDALVAESTLNAERSEKISEIMNLGEDILEKDLLKTEQQKARTDAFEAKDKADHKAIMEDTSIRIPGVIRVFRQPEEQGPPDLRFEPPQPAGELSVLAEAVK 145
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig123.69.7 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FJ25_ECTSI3.270e-3859.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L5V2_9PHAE3.370e-3761.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig123contigP-littoralis_Contig123:349962..356304 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size609
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_004650.1
Cds size453
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig123.69.7prot_P-littoralis_Contig123.69.7Pylaiella littoralis U1_48polypeptideP-littoralis_Contig123 349962..356148 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789535.5844073-CDS-P-littoralis_Contig123:349961..3500481680789535.5844073-CDS-P-littoralis_Contig123:349961..350048Pylaiella littoralis U1_48CDSP-littoralis_Contig123 349962..350048 -
1680789535.6044893-CDS-P-littoralis_Contig123:350712..3508141680789535.6044893-CDS-P-littoralis_Contig123:350712..350814Pylaiella littoralis U1_48CDSP-littoralis_Contig123 350713..350814 -
1680789535.6130092-CDS-P-littoralis_Contig123:351687..3517861680789535.6130092-CDS-P-littoralis_Contig123:351687..351786Pylaiella littoralis U1_48CDSP-littoralis_Contig123 351688..351786 -
1680789535.62384-CDS-P-littoralis_Contig123:352784..3529051680789535.62384-CDS-P-littoralis_Contig123:352784..352905Pylaiella littoralis U1_48CDSP-littoralis_Contig123 352785..352905 -
1680789535.6374588-CDS-P-littoralis_Contig123:356104..3561481680789535.6374588-CDS-P-littoralis_Contig123:356104..356148Pylaiella littoralis U1_48CDSP-littoralis_Contig123 356105..356148 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789535.6493587-UTR-P-littoralis_Contig123:356148..3563041680789535.6493587-UTR-P-littoralis_Contig123:356148..356304Pylaiella littoralis U1_48UTRP-littoralis_Contig123 356149..356304 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig123.69.7

>prot_P-littoralis_Contig123.69.7 ID=prot_P-littoralis_Contig123.69.7|Name=mRNA_P-littoralis_Contig123.69.7|organism=Pylaiella littoralis U1_48|type=polypeptide|length=151bp
MADDSSDDDFSLSFSLPGASTGKDKAAAAKLAKKKAARSFHSSSSGLDAL
IAESKRDAVRSEKVRTILDLGDGILAKDLGRMDEQKARTDATEAKDKATH
KAIMEDTSIKVAGVIRVFGRPQCQALPDLQFSAPSPAGELSVLFEAVKQS
G
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mRNA from alignment at P-littoralis_Contig123:349962..356304-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig123.69.7 ID=mRNA_P-littoralis_Contig123.69.7|Name=mRNA_P-littoralis_Contig123.69.7|organism=Pylaiella littoralis U1_48|type=mRNA|length=6343bp|location=Sequence derived from alignment at P-littoralis_Contig123:349962..356304- (Pylaiella littoralis U1_48)
CCCTCACCTATGGGGTATGACGATAGAATAGCTTCGCTGTTCTATAGTCA
TACCCCATAGGTCGCGCGTTGGTGGGCGGCGCTGGTCCTGCTTTCCTCGC
TGTCCTCGTCCGTGTCAACCTACCGAGAGAGACACCACGAAGCCCTGCAA
TATATCATGGCGGACGACAGCAGTGATGATGATTTTTCACTGAGCTTTAG
GTGAGAGATGGGTGTGTGGCAAAAAAAAACGAGAAGAGCATGTTTTCCGT
GTTTTCAGACACAGAACGCACATTGAAAGAGGGAGAAAGAGGTTGGCTTG
CTTGCTCCCCACAGGTGCGGCAACGTCCGCTAACTCCTGAACAGCAGATG
TGGTTCGCGTCGGGCTATTTGGGGTCACCGAATAGGATGCGATCGGTTAC
ACACTATGACATTTTCGTTTAGCCTTCACCGTCTGTAAGACGACTCCTAA
CCTAACAAACCACGCACGGGAGAGGAAAACGTGAGCATCTGAATTTGAAT
TTTTTTGAAATTTGAACATCCAGGCCCCAGGAAGGGATCCAGGACTGGAG
ACACAGAGAGGATACGGTATAAGGCCCTTTTTAATCAGGAGGCCTGAATT
CGCCGAAACGTGAAATCATTTCCCCGAAAGGTGGAGAGAATTTGGCTCCG
TTCTAATCGGAGAGGTCATGGTCCTTTCCTCCCATAAAATCAGACAAAGA
TCACTACACAACAGCAGACAGCAACAGAGACCGAAGACCTCCCGAGTCTT
CCTTCCTTCGAAACGTAGGTCTACATGATGGTGACCCTCGGTATTATTGC
CGCTGCGTGGTTATGGTAGCTCGTGTGAGGCTCACCGAGGGTCGTAAGAA
GACGGTGTGTGCTGTTGGACGCTTCCAAATCGCGCTGGTGGTGTTTTTTG
GTTGCAGTCACAAGCTTTACTTGACGGCATCAGACAGCATCAGAGCTACA
AGGCCTCCGAACTCCTGATTCTTTTGGAACGGGCGTCTACATGATAGTGA
CCCTCGACCACGCTGGCGCTACGAGGTCGTTGCAGCTTGATTGCTGGCTT
CAAAGGGGTTGCCAGCAGGGTGTGTGTTGGCGGAGCAAGAAAAAGAGGCA
GACAAGCGGCGAAATCAAGGATTCCGGTTCCTTCTCGTCGCTACTGCTCT
AATTTTGTTCACCAACCTCTCACCACGCCTGCCGGAATGTGAACATCAGG
GGTGGGTTTGCTCGCCAGAGTGATAGTCTCGGGTACCCTGCTTTTTATTT
TGCTATCTGCACTGCTGTTGCTGCTGTAGGGCGAGTTTGGTGTGTGTTGT
GTACGTTTCTGGAAATGGTTGGAAAAATTCACCTTTCGGTGAAATCGAAT
ATTCACCTTTTTTTTGCTATCGCTCAATTTCACCTTTCGGGGGAAGAAAA
CCTTCATATTGTCAGCCGTTTCACCGAAAGGTGAAAAAAAAAGCGGTTCG
GCGAATTCAGGCCTCCTGATTAAAAAGGGCCTTAGAACAGAGCGAAACTC
AGTTCATGTTTCCCGGGAATGGTTCTCTGTTTCCCGGCAAAAATCCGGAA
TGATTAGAAAGGGCCTAATTATGAAAAATGTGGAAAAAAACAATGTAACC
ACACTATCATCTGATGCTGTACCGCAGACCGCTGTATATTCGAGTACTGC
TATACAATAAAAGAGAGATGGTGATGAGTTCCGGGCCCTCCGCGATACTT
TCAGCAGCGCCGTTTTGCTTTCGGAATGGTATTGTATCCCGCGCAAACGA
TATCGTGCCACTTTTTTTCAAGGCTTTACTCTGGTGGAACTCGGTTTAAA
CGTTTAAACCGCCTTTGGCGGGACGATGTAACGACTTTGCCCCGTCCCGA
CCCTTGAATGAAAAAAAACGACCACCCCGTCCCGCCACGTCGAAAAAAAC
ACCGCCCCGGCCCGCCACGTCGAAAACAAAAACTATCACCCCGTCCCGCC
AAAAATTATCCCGAGAAAACGACCGTCCCGTCCCGTCCTGTCAAGAATTA
AAACCTCCATATTTTGGTACTCCTGCGCTACCGCCGACATAAAAAAATTG
AAAAATTAACATGCACCCGAATTTTCCTCCCGTCCCGTCAATTTGAAGTT
TCAGTCGTCCATGTCTAGTGCCAGCCTTGAAAAATGATTGCAGAGTCAAC
CATTTTAAACGCAAGGTGCAACGATTTTCGCGTCGTGTGCCATCCTCATT
TCGTATCCAGTCCACAAAAAATATTGTGTGGGGGCCATATATGTTCAGAG
AGTATTTTTTATTATGCACGTATCATACACAAGACGATTTTTTTTCACAA
AATGTTAGCCATCACCCCGCCCCCTTGGCACGCGTGAAAAGAATGATACC
GTCCCGGCGCTGTGAAAAACAGCCCCGGTCCCAGCGCTAAAAGATAACCG
CCCGTCCCGCCGCTAACAAATAATAAAAAACACAATCGCCCTGTCCCGGC
GCTGAAAAAACGCAACAACCACAAAAAAAAGGCCACCGCGTCCCGCCTCG
AAAGAAAAAAATAACCGCCCCGTCCCGGCTAGGAAAAAACATACTACTGC
CCCGTCCCGCAAAAAATATTGCCGAGAACGTCCCGTCCCGTTCCGCAAAG
AATTCCCACCCCTACATTTGGCCATCCCGGCGCTCCCGCCGAAATGAAAA
AGGTGGATCAACCGTCAATTTTCTCCCCGTCCCGTCCCGTTGAGATTTTA
GCCGTCTATGGAAAGCCTTGCTATTTGTCTATTTTATGCATATGACAAGA
TACGAACAACATGTCGGCACTTTCGTATTTTAACAAGACGTAATTTCGTA
ACGAAGACGGAGAACATGAAATGTTACGTGTGTCACACGAGACGACCACT
AAATTGTCTTCTTGAGCCGCCTGATAACAACCTCAGGGGAGCTGTGCAAC
GGGGATACGTTATCTGACGAGTAAAAAAACACAGGTATATATGTGTTTTG
TTTATTACGTTCGTTCCTAATCCACTCTAGATCCTTGTCTACTTCAACAG
AGGCATTGAGCAATTTTTTCGAAATACTTACGTACCGAGTACTTCGTACT
CCGGAGTATATCCTATCTGTAGACTGGGATCTAGAGTACCGTGGTAGATA
TTACTGTATAGCAACGAACACAAAGTGTATTACATCCACCTGTGTGTCGT
ACTTCAGTATTACACCCATCTGAGAGCCGAATATCTCTCAACCCAGCACT
GTGATGTGTTGAGCACCGTAGCAACCGTGCTCCGTCCCTCGAAAAGGGAT
AGCCGTGTTCAGTGGTCATATTTAATGGTCGAACGAGTACCGGTAAAGGG
CAAACAACCACTACTACTGTGAAACAATATAATAGAGTGAGCCCCTCCCC
CCCCCCCAACCCCCCCGCCTCCGGCCGTTAACTGCACACGGCACGCCAGC
TTGCCTGGTGCCAGCACAGGCAAGGATAAGGCTGCTGCAGCAAAGCTCGC
CAAGAAGAAGGCTGCGCGATCGTTTCACTCTTCGAGCAGCGGTCTGGACG
CTCTCATCGCGGAGTCAAAGGTACTTTATCTGCAGAATACGATGTATTTT
CGTAAAGTCAGAATCTACACACGTCTATCCTTTGCTTGTAGAGTCCATGT
GAGTAGTTCGAGCGCGCTTCACACACCGTTGATTCAATCCCACGGTAGCC
CCCGTCGAAATCCTATGATACGTACGGAATTTCAGCCGCCTCCATGTGTG
CGCGATGCTTCTACAAAAATTGTTTCCTCTGCCATCAGTGAGTCAAGCTC
CGAAAGCTGGGCACTTGCAAATCATTCAACGCCACGATATGCACGTGTTT
TAGAGCTGCACCCTTGTGTTGAGGGTGTCTGGGTAATTTTTTATCCCGAA
GCTTGGTTGCAACTCCTTTGAGCACATCCTTTCTTCTCTCTGGAGATATT
TCGTGTTTCTACATATGTACTTCAGTATCATATCATACATATGGCGCACT
TCCAAAGCGTGTGTTTTTTTCGAAACCGCGGTACTTACATTATTTTACTA
ATATGTGACTTAAAAATGTGACTACATCACTTGCTTATGGTGTGCCGTGC
TTCATGGAGCTGTATCTCAAGATTATGACTTTCTTATGTGTACCTTCCTG
GCCGCGAAGAATGCGCATAGACCAGTTTTTCGCTGAGAAGACGATAACCA
ACTCTGCTTTTCCCTCTGTCTACTTTATGCTGAAGTACAGCGTTGTTCGG
TCGTGCGTCTAGCTTTTCTTGTGCCGTTTAAGGTCCGTTGTACTCATCCC
ACCCACCATACGGGCAAGCACTCGACTCCGACTGATGGATGACCCTCTCT
CCTTTTCCAGGCACTCACTACAGCAGTCCTAGCACGCGAGCGAGCGTGAG
AAATACTGCAGAAACCCACCACCCCGTTCGGTCTCAAAAACGCGTGCACA
CCTTGCTGCCCTCTTTCCCGCAAGGGGGCACAAGCTGTCAGAAACTTACA
TGGAATGATCGCATTTCATTTCTGGCCCCCTTGTACATACACTGCGAATT
TGCTTCTTTCTTTTGAAGCGGGACGCTGTTAGGTCGGAGAAAGTTAGGAC
GATTTTGGACCTGGGGGACGGCATTCTGGCGAAAGACCTGGGGCGGATGG
ACGAGCAAAAAGCGAGGGTGAGGAATTGTTGTTCAAGTAGTATGCCAATG
TGCAGCATCAGCAGCCAGACACCCTCGGGATAAGGCTTGTCGGGACTCCG
ATGATTCTCTTTTGCGGAAGCGTTTTAAGTGTTTACTCGACTGCGAAAGG
TGACATCATCGCCGGTGGAGTTTTTGCACATGTTGCTCGGCACCGGTGCT
GCCTGCCGCTGCTCTTGACTGCACAGCAGAATGCCAGGGCGGGAGAGCTT
GCTGTTTTCCAAGCGTGTACCGCTGATAGGCGAGGTTACGCGTGTCGCGG
AGACGGCTCGCGTCCTTTCCTACAGCGTTTCGCTCATGCTCATGTCGGGG
TAATAATGCTCCACGCTGCGGCGCTCGTTTTGCGTTGTACGGGTTGTGTG
TTGTCGGCCTAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAAAGAGCTGCTCATCATAAGGTAGGT
TCTCTCTTTCGATTTTTGGAGTGCCCCGGCCAAAGACTCGCCCCCACTCC
CGAACAGGGAGTCAACACGGCACTCGGGTTTTTTGTTGGGTTATTTGGTC
ACCCCGCAGACGGCACACTGTGAACGCCAGGAACAACAAATGGGCTTGCT
TCCTCTTGAATTTGTCTCAACAACGTAGACGTACTCCGAGCAGCAGCGTA
ACATGTCATTTTAGTTTTTTTCCATTTCCGAGGCTTGTTCATCTGCAATG
CCCACGCAGATGGCGTTTGCTCCGGGTCCACTTCTCACTCGAGCAAAAAA
AATGGTTTATCCTCCGAACCTTGAGGTTGGAGCAGCTCCGGTCTCACTCG
CTGGATTCCTGCCCGTGCCGTTCCTGTTCCGTGTGTGCAGACAGATGCAA
CCGAGGCTAAGGACAAGGCGACACACAAGGCCATCATGGAGGACACATCT
ATCAAAGTTGCGGGGGTCATTCGAGTGTTCGGCCGGCCTCAGGTATTACG
CGGCTATCAACAAATACTAATTTACTTGGCGTGTCTTCTGAAACAAACGC
GTGTGCACACCGGAACATTCCACGCTCGTCTCGGATCTTGCTACATTGAA
CGTTCCGGCGTTAGCCGCAGCAGCCCTTGTACTTACGTATGTACTTCAAG
AGTGGGCCACTTTCAATACTACCAGTCCATATTCCTCTTTCACACCCAAA
GCACCGAACTACACCTGCGTGGTCTCGCGAGCACTTCGACTAAACAGACA
AGCAGACAGACAGGCATTGACAGAAGTACTACAAGAATGAACGTTTGGTT
GAGACCATTCAGGGTCAAAAACACTTCACCGAAATTATTCAGTGAAATGT
GTTCTTGATCAGACCCCAAGGATACCCAAGAGTCGGTGCCGGCCACGGGT
ATGGGCGGTCCTGTGCTTCTGCTTCGACACCCCTCTCCCCACTGCACGCA
AGCATTCGAAGACTTGTGAACGGCAGTTTGATGCACGATAACGGAGGCAA
CAAACGTTCCGCTTGATACGGCATCTCACACGTTGCGTTAAATCAAGGAG
CGTCACTCCGCGTGACCTGTAAGTAGAAAATTGTAAAAGCAACTGCATGT
GGTGATCCCGCTGTGACTGTTGAAACCGTTTCTCTCCTCTTTATTTTCGA
GGTTAGTGTCAAGCGCTTCCGGATCTCCAGTTCAGTGCTCCCTCTCCTGC
GGGGGAGCTATCGGTTTTGTTTGAAGCGGTGAAGCAGTCAGGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig123:349962..356304-

>mRNA_P-littoralis_Contig123.69.7 ID=mRNA_P-littoralis_Contig123.69.7|Name=mRNA_P-littoralis_Contig123.69.7|organism=Pylaiella littoralis U1_48|type=CDS|length=453bp|location=Sequence derived from alignment at P-littoralis_Contig123:349962..356304- (Pylaiella littoralis U1_48)
ATGGCGGACGACAGCAGTGATGATGATTTTTCACTGAGCTTTAGCTTGCC
TGGTGCCAGCACAGGCAAGGATAAGGCTGCTGCAGCAAAGCTCGCCAAGA
AGAAGGCTGCGCGATCGTTTCACTCTTCGAGCAGCGGTCTGGACGCTCTC
ATCGCGGAGTCAAAGCGGGACGCTGTTAGGTCGGAGAAAGTTAGGACGAT
TTTGGACCTGGGGGACGGCATTCTGGCGAAAGACCTGGGGCGGATGGACG
AGCAAAAAGCGAGGACAGATGCAACCGAGGCTAAGGACAAGGCGACACAC
AAGGCCATCATGGAGGACACATCTATCAAAGTTGCGGGGGTCATTCGAGT
GTTCGGCCGGCCTCAGTGTCAAGCGCTTCCGGATCTCCAGTTCAGTGCTC
CCTCTCCTGCGGGGGAGCTATCGGTTTTGTTTGAAGCGGTGAAGCAGTCA
GGT
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