mRNA_P-littoralis_Contig123.42.3 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig123.42.3
Unique NamemRNA_P-littoralis_Contig123.42.3
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig123.42.3 vs. uniprot
Match: D7FJ16_ECTSI (Calponin-homology (CH) domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ16_ECTSI)

HSP 1 Score: 439 bits (1129), Expect = 1.360e-148
Identity = 244/335 (72.84%), Postives = 277/335 (82.69%), Query Frame = 3 
Query:   66 MAAFGSRGAGYGLDAELCRQREAKYDYDAEDSARAWIEAVTNEPVKGLFGDALRNGVLLCKLVNTIKPGAVRRVNESRMPFKQMENISNFLKSCRALGVAEHSLFETVDLFEGKDIGLVVRCVFSLGSAVQLTCPEYTGPSLGAKLHQANKRVFNEQQKQQARVNSSFSKMTMGSAHIMERPPIPNTGITFGAVSAGKGDTTTMGKLTKGSHGIQERLPLDIFNNMXXXXXXXXXXXXXXISKASSPAALGSFGIMDRNSFSNANDITFGASASQGTPLD-KKAYEAHASKETVAEPAVKQAAADCSVAKHMTPLLFGSDVVE-NNRNWFQSRSG 1064
            MAAFG+RGAGYGLDAEL RQREAKYD+ AED ARAWIEAVT E V G FGDALR+GV++CKLVNTIKPGAVR++NESRMPFKQMENISNFLKSCRA+GVAEHSLFETVDL+EGKDIGLVVRC+F+LGSAVQ TCPEYTGP+LGAK HQ NKR+FNE+QKQQA+VN+SFSK+ MGSAH MER  I   GI FGA +AG GDTTT+GKLTKGSHGIQERLP+D   ++ XXXXXXXXXXXXX      P+ L S+GIMDRNSFSNAND+TFGA +SQ  PLD  K  +A A      +P      ADC V+  M+PL+FG D VE NNR+WFQ+RSG
Sbjct:    1 MAAFGARGAGYGLDAELARQREAKYDHSAEDQARAWIEAVTGERVVGPFGDALRDGVVICKLVNTIKPGAVRKINESRMPFKQMENISNFLKSCRAMGVAEHSLFETVDLYEGKDIGLVVRCIFALGSAVQGTCPEYTGPTLGAKPHQENKRIFNEEQKQQAKVNASFSKLGMGSAHSMERSQISKPGICFGAENAGTGDTTTVGKLTKGSHGIQERLPVDQSRSITXXXXXXXXXXXXXXXXXXQPS-LSSYGIMDRNSFSNANDVTFGAPSSQARPLDGNKEKDADAGVSVPEKPT-----ADCPVSAAMSPLVFGCDTVEKNNRSWFQARSG 329
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BLAST of mRNA_P-littoralis_Contig123.42.3 vs. uniprot
Match: A0A835ZHQ8_9STRA (Calponin homology domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHQ8_9STRA)

HSP 1 Score: 251 bits (642), Expect = 2.610e-76
Identity = 121/198 (61.11%), Postives = 155/198 (78.28%), Query Frame = 3 
Query:   84 RGAGYGLDAELCRQREAKYDYDAEDSARAWIEAVTNEPVKGLFGDALRNGVLLCKLVNTIKPGAVRRVNESRMPFKQMENISNFLKSCRALGVAEHSLFETVDLFEGKDIGLVVRCVFSLGSAVQLTCPEYTGPSLGAKLHQANKRVFNEQQKQQARVNSSFSKMTMGSAHIMERPPIPNTGITFGAVSAGKGDTTTM 677
            RG GYGLDAEL  +  AKYD++ E +A+ W+EAVT    +G F  +L++G LLC+L+N IKPG ++R+N S+MPFKQMENISNFLK+CR LGVAE+SLFETVDLFE KD+GLV+RC+F+LGSAVQ + PE+ GP LGAK H ANKR F  +Q +QAR++++ +K   GSA +MER PI  TGIT GA  AG GDT++M
Sbjct:    4 RGGGYGLDAELALKAAAKYDFEGERTAQEWMEAVTGVKFEGSFASSLKDGTLLCQLINAIKPGTIKRINSSKMPFKQMENISNFLKACRTLGVAEYSLFETVDLFEEKDVGLVIRCLFALGSAVQSSTPEFAGPHLGAKPHTANKREFTAEQMRQARLDTTMTKAMQGSAAVMERLPIVKTGITAGAEYAGIGDTSSM 201
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BLAST of mRNA_P-littoralis_Contig123.42.3 vs. uniprot
Match: A0A836CGB8_9STRA (Calponin homology domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGB8_9STRA)

HSP 1 Score: 237 bits (605), Expect = 2.300e-71
Identity = 115/197 (58.38%), Postives = 146/197 (74.11%), Query Frame = 3 
Query:   78 GSRGAGYGLDAELCRQREAKYDYDAEDSARAWIEAVTNEPVKGLFGDALRNGVLLCKLVNTIKPGAVRRVNESRMPFKQMENISNFLKSCRALGVAEHSLFETVDLFEGKDIGLVVRCVFSLGSAVQLTCPEYTGPSLGAKLHQANKRVFNEQQKQQARVNSSFSKMTMGSAHIMERPPIPNTGITFGAVSAGKGDT 668
            G+RG GYGLDAEL R+  A YDY  E +A+ WIEAVT    +G F  AL++G +LCKL+N I+PG V+++N S MPFKQMENIS +LK CRALGVAEHSLFETVDL+E KDI LV++C+F+LGS +Q + PE+ GP LGAK+H ANKR F  +Q  +AR+  + +K T GSA +MER  +   GIT GA  AG GD+
Sbjct:    3 GARGGGYGLDAELARKAAANYDYAGEHAAQEWIEAVTRVKFEGTFAAALKDGSVLCKLLNAIRPGTVKKINTSSMPFKQMENISAYLKGCRALGVAEHSLFETVDLYEEKDISLVIKCLFALGSTIQSSVPEFHGPHLGAKMHTANKREFTAEQMAKARLGGAITKQTQGSAAVMERLHVTKGGITMGAEYAGTGDS 199
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BLAST of mRNA_P-littoralis_Contig123.42.3 vs. uniprot
Match: A0A6H5L3X7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3X7_9PHAE)

HSP 1 Score: 238 bits (606), Expect = 3.260e-67
Identity = 122/198 (61.62%), Postives = 144/198 (72.73%), Query Frame = 3 
Query:   78 GSRGAGYGLDAELCRQREAKYDYDAEDSARAWIEAVTNEPVKGLFGDALRNGVLLCKLVNTIKPGAVRRVNESRMPFKQMENISNFLKSCRALGVAEHSLFETVDLFEGKDIGLVVRCVFSLGSAVQLTCPEYTGPSLGAKLHQANKRVFNEQQKQQARVNSS--FSKMTMGSAHIMERPPIPNTGITFGAVSAGKGD 665
            G RG GYGLDAEL  +REA YD      A+ WIE VT E     FG+ L++G  LC L+N IKPGAVRRVN+SRMPFKQMEN+SNFLK+CRA+GVAEHSLFETVDL+EGKD+GLVVRC+ +LG  VQ +CPEY GP LG K  +ANKR + E+Q+QQ   NSS   S +  GS+  MER  I  TG TFGA  +G GD
Sbjct:  340 GGRGGGYGLDAELAARREANYDXXXXXXAQEWIEDVTGERFAEGFGEELKDGRKLCLLINQIKPGAVRRVNDSRMPFKQMENVSNFLKACRAVGVAEHSLFETVDLYEGKDLGLVVRCLHALGQTVQNSCPEYNGPRLGIKQTEANKREWTEEQQQQQLRNSSGAMSNLLAGSSKTMERATILKTGATFGAAQSGTGD 537
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BLAST of mRNA_P-littoralis_Contig123.42.3 vs. uniprot
Match: A0A2D4CAP3_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CAP3_PYTIN)

HSP 1 Score: 195 bits (495), Expect = 3.670e-53
Identity = 100/190 (52.63%), Postives = 132/190 (69.47%), Query Frame = 3 
Query:   81 SRGAGYGLDAELCRQREAKYDYDAEDSARAWIEAVTNEPVKGLFGDALRNGVLLCKLVNTIKPGAVRRVN-ESRMPFKQMENISNFLKSCRALGVAEHSLFETVDLFEGKDIGLVVRCVFSLGSAVQLTCPEYTGPSLGAKLHQANKRVFNEQQKQQARVNSSFSKMTMGSAHIMERPPIPNTG-ITFGA 644
            +RG GYGLDAEL ++   KYDY+ ED AR WIEA+T   +   FG+ LR+GV+LC+L N I PG +RR+  +S+MPFK MEN+S FLK+CR +GV E+ LFETVDLFE K +GLVVRC+ +LG AVQ   P + GP+LG K    N+R F E+Q  QAR  ++ S +++GS   MER  +     +TFGA
Sbjct:    8 ARGGGYGLDAELAQRAAEKYDYEMEDEARQWIEAITGREIGASFGEGLRDGVILCELANKIHPGVIRRIETKSKMPFKLMENVSAFLKACRTIGVNEYELFETVDLFELKXLGLVVRCLHALGRAVQKNYPSFNGPTLGVKEAAKNERQFTEEQIAQAR--NAPSLLSLGSMRTMERLDVSRANDVTFGA 195
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BLAST of mRNA_P-littoralis_Contig123.42.3 vs. uniprot
Match: K3WZS5_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WZS5_GLOUD)

HSP 1 Score: 197 bits (500), Expect = 2.490e-52
Identity = 101/193 (52.33%), Postives = 135/193 (69.95%), Query Frame = 3 
Query:   81 SRGAGYGLDAELCRQREAKYDYDAEDSARAWIEAVTNEPVKGLFGDALRNGVLLCKLVNTIKPGAVRRVN-ESRMPFKQMENISNFLKSCRALGVAEHSLFETVDLFEGKDIGLVVRCVFSLGSAVQLTCPEYTGPSLGAKLHQANKRVFNEQQKQQARVNSSFSKMTMGSAHIMERPPIPN-TGITFGAVSA 653
            +RG GYGLDAEL R+   +YDY+ ED ARAWIEAV+   +   FG+ LR+GV+LC LVN I P  V+R+  +S+MPFK MEN+S+FL++CR +GV+E  LFETVDLFE KD+G VVRC+F+LG AVQ T P++ GP+LG K    N+R F E++  +AR   S   + +GS   MER  +     +TFGA +A
Sbjct:    8 ARGGGYGLDAELARRAAERYDYEMEDEARAWIEAVSGMAIGDEFGEGLRDGVILCTLVNKIHPDIVKRIETKSKMPFKLMENVSSFLRACRTMGVSEFDLFETVDLFELKDLGHVVRCIFALGRAVQKTYPDFNGPTLGVKESVKNERTFTEEKLNEARAAPSL--VNLGSFRTMERLDVSRGNSVTFGAEAA 198
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BLAST of mRNA_P-littoralis_Contig123.42.3 vs. uniprot
Match: A0A8K1CMC3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CMC3_PYTOL)

HSP 1 Score: 195 bits (495), Expect = 1.410e-50
Identity = 100/189 (52.91%), Postives = 130/189 (68.78%), Query Frame = 3 
Query:   84 RGAGYGLDAELCRQREAKYDYDAEDSARAWIEAVTNEPVKGLFGDALRNGVLLCKLVNTIKPGAVRRVN-ESRMPFKQMENISNFLKSCRALGVAEHSLFETVDLFEGKDIGLVVRCVFSLGSAVQLTCPEYTGPSLGAKLHQANKRVFNEQQKQQARVNSSFSKMTMGSAHIMERPPIPNTG-ITFGA 644
            RG GYGLDAEL ++   +YDYD ED AR W+E +T   +   FG+ LR+GV+LC+LVN I PG V+RV  +S+MPFK MEN+S FL++CRA+GV E  LFETVDLFE KD+GLVVRC+ +LG A Q   P++ GP+LG K    N+R F+E+Q  +AR   SF  +  GS   MER  +     +TFGA
Sbjct:    8 RGGGYGLDAELAKRAAERYDYDLEDEARYWVEEITGMEIGDDFGEGLRDGVILCELVNKIHPGVVKRVETKSKMPFKLMENVSGFLRACRAMGVNEFELFETVDLFELKDLGLVVRCIHALGRATQKNYPDFKGPTLGVKESSKNERQFSEEQLAEARNAPSF--IAQGSVRTMERADVRKANDLTFGA 194
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BLAST of mRNA_P-littoralis_Contig123.42.3 vs. uniprot
Match: D7FNP0_ECTSI (Calponin-homology (CH) domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNP0_ECTSI)

HSP 1 Score: 184 bits (468), Expect = 1.670e-50
Identity = 104/225 (46.22%), Postives = 132/225 (58.67%), Query Frame = 3 
Query:  123 QREAKYDYDAEDSARAWIEAVTNEPVKGLFGDALRNGVLLCKLVNTIKPGAVRRVNESR--MPFKQMENISNFLKSCRALGVAEHSLFETVDLFEGKDIGLVVRCVF----------------------------------------SLGSAVQLTCPEYTGPSLGAKLHQANKRVFNEQQKQQARVNSS--FSKMTMGSAHIMERPPIPNTGITFGAVSAGKGD 665
            +  A Y  D +  A+AW+E VT EP++G F D LR+GV LCKL+NTIKP +VRRVN  +    FKQMENISNF++ CRA+GV E+SLFETVDL+EGKD+GLVV+C+                                         +LG  VQ +CPEY GP LG K  +ANKR + E+Q+QQ   NSS   S +  GS+  MER  +  TG TFGA  +G GD
Sbjct:    8 ESSAGYGGDLQAEAQAWVEQVTGEPLEGDFADGLRDGVRLCKLLNTIKPSSVRRVNPFKEGQKFKQMENISNFIRGCRAIGVPEYSLFETVDLYEGKDVGLVVKCLMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHALGQTVQNSCPEYNGPRLGIKQTEANKREWTEEQQQQQLRNSSGAMSNLLAGSSKTMERATVIKTGATFGAAQSGTGD 232
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BLAST of mRNA_P-littoralis_Contig123.42.3 vs. uniprot
Match: A0A5D6XYZ9_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XYZ9_9STRA)

HSP 1 Score: 189 bits (480), Expect = 8.420e-50
Identity = 100/190 (52.63%), Postives = 132/190 (69.47%), Query Frame = 3 
Query:   81 SRGAGYGLDAELCRQREAKYDYDAEDSARAWIEAVTNEPVKGLFGDALRNGVLLCKLVNTIKPGAVRRVN-ESRMPFKQMENISNFLKSCRALGVAEHSLFETVDLFEGKDIGLVVRCVFSLGSAVQLTCPEYTGPSLGAKLHQANKRVFNEQQKQQARVNSSFSKMTMGSAHIMERPPIPNTG-ITFGA 644
            +RG GYGLDAEL R+   +YDY+ ED AR WIEAV ++ +   FG+ LR+GV+LC LVN I PG V RV  +S+MPFK MEN+S FL++CR +GV E  LFETVDLFE KD+G VVRC+F+LG AVQ   P++ GP+LG K    N+R F E++  +AR  ++ + + +GS   M R  I  T  +TFGA
Sbjct:    8 TRGGGYGLDAELARRAAERYDYEMEDEARDWIEAVAHKDIGEDFGEGLRDGVVLCALVNAIHPGIVPRVETKSKMPFKLMENVSAFLRACRKIGVNEFDLFETVDLFELKDLGHVVRCIFALGRAVQKNYPDFAGPALGVKEAVKNERTFTEEKLNEAR--NAPALVNLGSLRTMARLDIARTNSVTFGA 195
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BLAST of mRNA_P-littoralis_Contig123.42.3 vs. uniprot
Match: A0A3F2RVG1_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RVG1_9STRA)

HSP 1 Score: 181 bits (459), Expect = 1.220e-46
Identity = 99/195 (50.77%), Postives = 128/195 (65.64%), Query Frame = 3 
Query:   84 RGAGYGLDAELCRQREAKYDYDAEDSARAWIEAVTNEPVKGLFGDALRNGVLLCKLVNTIKPGAVRRVN-ESRMPFKQMENISNFLKSCRALGVAEHSLFETVDLFEGKDIGLVVRCVFSLGSAVQLTCPEYTGPSLGAKLHQANKRVFNEQQKQQARVNSSFSKMTMGSAHIMERPPIPNTG-ITFGAVSAGKG 662
            RG GYGLDAEL R+   +YDYD ED ARAW+E ++   +   FG  LR+GV+LC + N I P  VRRV  +S+MPFK MEN+S FLK+CR +GV E  LFETVDLFE KD+G VVRC+F+LG AVQ + PE+ GP+LG K    N+R F   Q   AR  ++ +  T+GS   M+R    +T  +  GA +A  G
Sbjct:   10 RGGGYGLDAELARRAAERYDYDMEDEARAWLENLSGMEIGPDFGPGLRDGVILCSVANKIHPDVVRRVETKSKMPFKLMENVSAFLKACRVMGVNEFDLFETVDLFELKDLGNVVRCIFALGRAVQRSYPEFKGPTLGVKESIKNQRAFTPDQLADAR--NAPALQTLGSFRTMKRQTTFHTNNVMLGADAAQSG 202
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig123.42.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJ16_ECTSI1.360e-14872.84Calponin-homology (CH) domain-containing protein n... [more]
A0A835ZHQ8_9STRA2.610e-7661.11Calponin homology domain-containing protein n=1 Ta... [more]
A0A836CGB8_9STRA2.300e-7158.38Calponin homology domain-containing protein n=1 Ta... [more]
A0A6H5L3X7_9PHAE3.260e-6761.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2D4CAP3_PYTIN3.670e-5352.63Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
K3WZS5_GLOUD2.490e-5252.33Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A8K1CMC3_PYTOL1.410e-5052.91Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
D7FNP0_ECTSI1.670e-5046.22Calponin-homology (CH) domain-containing protein n... [more]
A0A5D6XYZ9_9STRA8.420e-5052.63Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A3F2RVG1_9STRA1.220e-4650.77Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig123contigP-littoralis_Contig123:209980..218909 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FJ16
Preferred nameSCP1
PFAMsCH
Model size1692
Max annot lvl2759|Eukaryota
KEGG koko:K20526
Hectar predicted targeting categoryother localisation
GOsGO:0000278,GO:0000281,GO:0000910,GO:0001300,GO:0003674,GO:0003779,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005938,GO:0006996,GO:0007010,GO:0007015,GO:0007049,GO:0007568,GO:0007569,GO:0008092,GO:0008150,GO:0009987,GO:0015629,GO:0016043,GO:0022402,GO:0030029,GO:0030036,GO:0030479,GO:0030674,GO:0030863,GO:0030864,GO:0032502,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0044877,GO:0048869,GO:0051015,GO:0051301,GO:0051764,GO:0060090,GO:0061640,GO:0061645,GO:0071840,GO:0071944,GO:0097435,GO:0099568,GO:1903047
Exons9
Evalue1.18e-152
EggNOG OGsCOG5199@1|root,KOG2046@2759|Eukaryota
Ec32 ortholog descriptionCalponin homology domain
Ec32 orthologEc-07_004790.1
Descriptionactin binding
Cds size1002
COG categoryZ
BRITEko00000,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig123.42.3prot_P-littoralis_Contig123.42.3Pylaiella littoralis U1_48polypeptideP-littoralis_Contig123 210045..218284 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789533.448993-UTR-P-littoralis_Contig123:209979..2100441680789533.448993-UTR-P-littoralis_Contig123:209979..210044Pylaiella littoralis U1_48UTRP-littoralis_Contig123 209980..210044 +
1680789533.561805-UTR-P-littoralis_Contig123:218284..2189091680789533.561805-UTR-P-littoralis_Contig123:218284..218909Pylaiella littoralis U1_48UTRP-littoralis_Contig123 218285..218909 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789533.4673202-CDS-P-littoralis_Contig123:210044..2101461680789533.4673202-CDS-P-littoralis_Contig123:210044..210146Pylaiella littoralis U1_48CDSP-littoralis_Contig123 210045..210146 +
1680789533.4793587-CDS-P-littoralis_Contig123:215973..2160541680789533.4793587-CDS-P-littoralis_Contig123:215973..216054Pylaiella littoralis U1_48CDSP-littoralis_Contig123 215974..216054 +
1680789533.4879813-CDS-P-littoralis_Contig123:216170..2163051680789533.4879813-CDS-P-littoralis_Contig123:216170..216305Pylaiella littoralis U1_48CDSP-littoralis_Contig123 216171..216305 +
1680789533.498688-CDS-P-littoralis_Contig123:216552..2166781680789533.498688-CDS-P-littoralis_Contig123:216552..216678Pylaiella littoralis U1_48CDSP-littoralis_Contig123 216553..216678 +
1680789533.5108774-CDS-P-littoralis_Contig123:216865..2169701680789533.5108774-CDS-P-littoralis_Contig123:216865..216970Pylaiella littoralis U1_48CDSP-littoralis_Contig123 216866..216970 +
1680789533.5212781-CDS-P-littoralis_Contig123:217121..2171991680789533.5212781-CDS-P-littoralis_Contig123:217121..217199Pylaiella littoralis U1_48CDSP-littoralis_Contig123 217122..217199 +
1680789533.5321858-CDS-P-littoralis_Contig123:217345..2174591680789533.5321858-CDS-P-littoralis_Contig123:217345..217459Pylaiella littoralis U1_48CDSP-littoralis_Contig123 217346..217459 +
1680789533.5416393-CDS-P-littoralis_Contig123:217845..2179501680789533.5416393-CDS-P-littoralis_Contig123:217845..217950Pylaiella littoralis U1_48CDSP-littoralis_Contig123 217846..217950 +
1680789533.5510378-CDS-P-littoralis_Contig123:218128..2182841680789533.5510378-CDS-P-littoralis_Contig123:218128..218284Pylaiella littoralis U1_48CDSP-littoralis_Contig123 218129..218284 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig123.42.3

>prot_P-littoralis_Contig123.42.3 ID=prot_P-littoralis_Contig123.42.3|Name=mRNA_P-littoralis_Contig123.42.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=334bp
MAAFGSRGAGYGLDAELCRQREAKYDYDAEDSARAWIEAVTNEPVKGLFG
DALRNGVLLCKLVNTIKPGAVRRVNESRMPFKQMENISNFLKSCRALGVA
EHSLFETVDLFEGKDIGLVVRCVFSLGSAVQLTCPEYTGPSLGAKLHQAN
KRVFNEQQKQQARVNSSFSKMTMGSAHIMERPPIPNTGITFGAVSAGKGD
TTTMGKLTKGSHGIQERLPLDIFNNMTFGRDAVGTGDTTVISKASSPAAL
GSFGIMDRNSFSNANDITFGASASQGTPLDKKAYEAHASKETVAEPAVKQ
AAADCSVAKHMTPLLFGSDVVENNRNWFQSRSG*
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mRNA from alignment at P-littoralis_Contig123:209980..218909+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig123.42.3 ID=mRNA_P-littoralis_Contig123.42.3|Name=mRNA_P-littoralis_Contig123.42.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=8930bp|location=Sequence derived from alignment at P-littoralis_Contig123:209980..218909+ (Pylaiella littoralis U1_48)
TGAGTACGAAGTAGTTCCGATCCGGTGAGACGGTGGTTGACCCCGGGCCA
CTTTCAATTTGTCAGATGGCGGCCTTCGGATCTCGCGGAGCCGGGTATGG
ACTGGACGCAGAACTTTGCCGTCAGAGAGAGGCAAAGTACGATTACGATG
CCGAGGATTCCGCGCGGGTGTGTAGCCAACAAATTTCACGGCTTTCTTTG
CTGCTGTTTCGTCCTTCCTGATCTGCATGTTAGCCTCGCCTTTTCACATA
GGTTCAACAGCAGAATTGTACCGGAGCATCAGCTCGCTGGAACTCGAACG
CAGAGAGAGCCGTACGGTGCCTCTGTTCGTTGTGGTTTACCTTCCGAAAC
CTTGAGCGTACGTTGCATGATGCATGGCTGGAGTTCGGGTAGCAATTTGA
CGGTCCGTTGTGTGTTTCTGTGGTCTTCACCTTCTTGCGATCATACGATA
TATTATACGGATAACGATATTCTGTGTCGACTTGGCTCGCTGGAATACGC
TCTGAAGCCTTGCCTTCTTTGTTGTCCTTGCCCCACTTTCGAGCTGATGA
TGGTGTCAAATTATGCGTATGTAGCGTAGAGCTCCAGCACCAGAGCCTGC
TGGATGCTGTATCAATCCCTTCGGACAAATTGCGGACGGCACCAACAAGC
GGCGCCTGGTGGAAATTTTTTTTTGGTCCACCCTCTCCGAGAGGCTGCAT
CGCATGATTTTATGATGAACGAAACTGCTGTGTGATAGAGTAGAGTGAGG
AGATATACCTTGACCGACTCGATGCTTATTTGCCGAGCAGCTCGCAGCGA
CTCGCGTGCACCTGAATCAATTTCTCTCGACGATCGTTTACCTCCTTCAC
TCGTTGCAAATAATGTACTTGGGGAATAGGATCATAACACGAAGAAGAAT
TTAAAGCAGTACAGTACCGGCCCGCTAATAAGAAAGCTCCTTTGAAGAAA
GTCAGCCTGAGATTTTCAGAAAATTAAGAAAGTGCCCAGCCTGGGCGGCG
AGTGCCACACTCAATCCTATACAATACAAAAGAAAGTGTCATGCTCGACT
TTCAACCCAACATGAGAAGTCAGCCTGAGCCAGATTTACTTGTTTCTTAT
TAGCGGGCCGGTACTGTACACCGTACGATGATGCAAACGGAGGTTTGCCA
TGGAGGAAAAACACTTTCTTTGCTACATAACTGGTAAGGCATCAAAGAAA
GACAGCCCATCTTAGGGTCTGTCTAATCACTGCGGATTTTTGCCGGGAAA
CAGAGAACCATTCCTGGAAACCTAAAATCTCCGACAATATGCAGGCGTTC
TTCTCGGTTTCCCTGAAATGAGCACTGCCCAAAAAATCCCGAAATACTCA
TTTCAGGGTTCCCGGAAATTTGAACCCGCATTTCGGGCAGACGTGCCTCC
AAGTTCGGGCACGCCTGCATAGGTGCTCAGTTCACACGAGCTGTCGTATG
CACGCCATCCCCAGGCCACACAACCACACAGTGAGTTCACAGGGTCGCCC
TGAGGCCATGGCTGATAGGAGGAAGCGCCTTCGGATGCTTCGCTTGGCGT
CCAGAGTTCGGATGCGGCGTGACTGCTGTGGGCGGGAAGAAGCTCGGGCT
TCAGGATAAAAAACAGAGAAAAGGCATTTTGAAAACAAATACTCGCCCAA
TCGTTTAGAACAAAGCGAAACTCAGTTCATGTTTCCCGGGAATAGTTCTC
TATTTCCCGGCAAAAATCCGGAATGATTAGACAGGGCCTTAGTGGCACGG
GGATGTTTTCAAGTTGATTTTTCGTGTTCATGAATAGAATTACCCGCAGA
GGAGATCGGCGGGCCGGTTTCCGTTTTTTGCGGCGTCTCTCGCATGAAGA
GGCTGGACGGCATACGACGCTCATGAAAGTGGTGCTTCGCGGTAAAAATG
CCCTTCATTTTTCATGAAAGAGCGTTCACAACAGTGCACTATGATACGGC
GGTATCATACACCAGGAACACTGACCGGCGGCCGCGCCTTGAACGGAAGA
TGCCGCATCCGCCATGTCTTATTTCTATTCTTCTGGTGGAACGCCACCAA
ATTAGTTGGATGCAATTGTTTTCGTGTCATGATAGCGTAGACTAGATGTG
ACAGGCGGCTACTCCCGCCTCCGGCGAGGGTTCTTTACGACTTTGGCACC
CTGAACATACCAGAACCTCTCGATGACTTGAGTACCCCTAACTCCGGCGG
CCGCGTCTTGCCTAGGAGGTGTGTCAGCGAGGACCAGTTGCCCGACGGCA
CTAGATAAATGAAGCCATGAAGAAGAAGGTATACAGATACCAGACCACTG
AAAGCAATGATGACTCTGTCAAGCTGGGCGAGAGTGCTTGAGACACTGTG
ACAAACTGCTGTATGTAGGAGGTGCGAAAACACCTGAAACCTAGCGAGGC
AGTCTTTTGCCACAACAGACGCCCAGTCGTGTTGTTGGCTGAACCACGGC
GTGGCCCCGAACACCGCTGCTTGTCTATTTTATTATACTGTTGCTTCTGC
TTTAAAAAACTAATGTCGGTTTGCAAATTTCAATCAAATCAAGCTAACCG
TATGATACATGATGACGACTCGAATGTATTTTAGAGCTGAGTCTCTAAAA
TGAGCCTGCAACTGATGACGAATAGGTATTGCGGCTGTTGTAATGATACA
AAATTATGTTTGCTACGAATTTATCAAATTCAAGCTAGAACACACGGTTG
GCGAGTCGTAACTCATTGAAATCTGGGCCAAACAAATCATCCCATTAATT
CCTCTCGCCGACACGACCTTTTCGTAAACCGATAATAGAGAGATTTTCTG
TTTAACAGATGGGTAAGACAGTCTGTGGCTGGCATCTCGAGTGCTCGAAG
AGACGCTTGATTGTGTCATGGTGCTTACCGAAGTGTCAGAAGACCATTTT
TCACTTTTAACGTATTATTGTTGTGATTTATTATTGTGCGTTACAGAACC
CACACCTAACACCATCCCTCCTTTTTGTTGTGTAGAAGGAACAATTTATT
CCGTGGTCTCAAAGCATGTCAACATCGTCTGAACATGGCAGTCAACAAAA
CATATATAAAGGTAAGGTTTGAGCGTCACACGCGTAACATCTCGAAAGCT
TGTACAGACAGCGCCACCAGTTAAGAACCTCTTTTTTTGCATGAGGCCCG
GGTTCTCTTTTAATCCGGGGTTGTGTAGAACCTCTTCACAAAGTATGACG
AAGTAGAAGAGAAGGTTTCCTCCGTCAGCCGTCGGAAAAAGTAAAAGTCT
TACTGCAGGATTCTGGAGAACGGGTCTTAGACTGGTGTGTTTCGCAAGAT
CGTTTACGCAAGGGCACCGGGGTGTCACCTCAAACACCGGTTGACTCAAC
ACGAGGGAAAATACAAATTCTAAAAACAGGCCCGGACAGCTGGATTGACG
CTTGAGAACAGTCTCTCTATATTATTATACTATGATATGGACGTACTCAG
GTTGTTTTACAAGTATTTATGATCCTGAAATCCACGAACGAATGAGACTC
GTGGTTCCTAAGGCGTTATAGATGGATGACCGAAGAAAGATTCTCTCATA
TGACTTCGGCGGCGCGATGCAGCGGTGCATACTCGAAAGGACCATGTTTC
TCTGAAGATGCGCAGGTAACTGAAAGGGGAATTGACAAAAAGGGTATACC
CCCTACTTTTAGGCACAAAAAGTGGTAGTGTGCTTTTCGTGCCGATTACA
TGTTGTTGTTGATTCTCACATTAGCTCACTACCGCCGCAGTCTAGCCCGT
GGTCACAAACCAGGCACATATCGTGCTAGGAGGAAAAAAAAAAATGGGCT
ATGATCACCCACAGTCAAATCAGATAGGGTACCGTTGGGGTACCATTTGT
GGTGGCCAAGTACCAAACAAAATAATACAGAACAAAAATAACAGGTTCGA
AAGAAAAAACAAAAATTGGAAACAATACGACAAAAAATAACCAAGACAAA
CCTCAATCATAATCATACACTTCGAAGTACTTCGTACATCGAGCCAGGGC
CCAGGGCCATGACAGACCAAGGCAAAGGCAAACCAGGGCGATGGTCCAGT
AACTATATGATCAACAAACGAAAGACAAAAATATAAAAAAAGAAGAAGAT
ACAGGGAGGGCACAAAGACTGAGGGAGGAGTGCACTCGTACACAAACACA
ACAAACAGGCCGCCAAACAAAGAGGAAGCAGGGGAACGAAAAGGGAAAAG
AAAAAAAAGAGACAGAGGAACAAAGCACATACACGGAGAGTGCAGAGGGA
AGACCAGGAGTACCGGAATTCGGGGGGGGGGGGGGGTAATAAAAAATATA
ATAAAAGGCATGCAATCAATCGCAAACATGTCTTGCCACGAGGTCTGCCT
GTTCACGCTTGCTCTCCTCAGTCGCACTCATGCCTCCTGCTACTGGCACC
ACCGTACCCAGTTGTTTCTGCCCCACATCTTTGGCAGCAGCTACACCACC
ATTCCGCCCTACAGGTTTTCCACTCCGGCCACCCCGTAGCTTGGCTTTGG
GCTGCTTCTTCTCGTGCTGTGCAACTCCAACCCCACTACCCCGCTGCCCT
TGTGCCCCCCCGTACCCCTCCTCTCGTTTATCTCCGCCATCCGTTCTCCC
TCTTTTAGTCAAGGCCTGCCCCTCAGCCGCGTCCCTCTCCCTTTTCCGTC
GACGTGTCTCTGATAAGTCTCCCTCTTTCTTGAGCCACTCGTCCGTGAAA
CGCCGCGCACCCTCGTCGATCCTGTCGTACCACTCGTCAGCTCTCTTGGC
ACTTGCCTCCCATCCCTCTTTTTTGTCGACCACAATGTCGAACGCTTCGA
GGTGCTCCTGCATTCGCCTCAGCTAGTCAAACTCTTGCCCCCCCAGATAC
CTCGCTCCCCCCTGCAATTCTCCCAAAAGAGTAATTTACGATATCGTGTG
CTATACGTCGGCTGTACCGACCCTAAAAAAAAAAGTGGCAGTTCGGTGAG
ACGGACACGGAGTGTAGGCAGCACACCAAGCATTTTTTTGTTTGTTTAGA
CGCGGGAATGGCGTTTTCTTGGGCGTGGAAAGTACGAATTCACGGTGCAC
CCCTTTTTGTTGATGAAATCAGGGGGTATACCTCCTGTTCTGCTAAAATG
ATATCTGCTACCCCATTTTGTTCATTGAAATCTCCCTTTTTTTTCAGATC
CAAACCCCGTCTACCCCTTTGTTCATTAAACTTTCCCTTTCGCGGAATCC
TCCGCAGCGGAATCAACAACAGGCTGCGTATCCACACAGAGATTTACGGA
GTCGCTGCGTACCTAATTAGTTGCGCGTACCATACACGTGTCAACTTTTT
TTTTTTCGTTCCACTGCATACCTATGCGATCTTCGCCAAGTACTCCCGAC
CCAAGAAGATTACCAGCGTAGTACCCTTCTGCGTACCCACGCATGAGATA
TAGAGCTATGAACAACAACACACGTACGGGAACCAACCACTCACACACAC
ATCTTACGACCACACAAAGGCGAGCCAGCCAGCGGACACACAAAACCATG
TCGGCGCATGCTTGTGCGCCGGATGCCTCTGTATGAGGCGGATGTGCACA
GCCTCCCGCATCCGGATCAAATAATCGAGCAGGAGATGTCAAGCAGGGAA
CCAGGGCGAGTAGGGCACAGATGAGACAGCAGACCGAGAAATGTGACACG
TCCATGTAAGAGGCAGATTGCACTCGGGGCACTTCGAACAATTTATTGGG
CTATTATTGTCTGATGCGGGTGTTTTTCGATGGTGGAGACCCCCTTTTTT
TCGCTCAAATCACCGAGGCTCAAAATGGGGTAGTGGCGCAGGAGCAACAT
CAATCCCGACTCAGCGGCAACGACAGGCACACTACCCCTTTTTGTTCTTA
AAGATAGGGGGGTATACCCCTTTTTGTCGATCGCCCTAACTGAAAGCGCA
CCGTAGCAAGCTTCAACCTGGGACATGAGTTTTCAGCTCGCATTGCTGAC
GTCCATATCCCTTCAACACGCACGGTTCATACCATTCCCTGCAGGCATGG
ATCGAGGCAGTCACCAATGAGCCGGTGAAGGGTCTTTTCGGAGATGCCTT
GAGAAACGGCGTTCTACTTTGCAAGGTAATTAGCCAAGTATTGCCTGGTA
TGGTTCACGCGAGTTACAGCTGGCATTGATTGGTTCCATCTTCTTGGCAA
CCTACCCTAATCTCTGACCCTAAACCCTATGCATGCCAAAGTTGGTCAAC
ACCATCAAGCCGGGAGCGGTGCGAAGGGTGAACGAGTCGAGAATGCCTTT
CAAGCAGATGGAAAACATATCAAACTTCCTGAAATCCTGCAGAGCGTTGG
GTGTCGCGGAGCACTCGCTGTTCGAGGTGAGATATTGGTGCAACGGTCTT
TATTTCGTTGTTGCTTGCTATACCAGTTACGTTTCGTCGTTTTACCGCCA
GTACACCTGCTAGGCTTGCGGCTCAACCCTTCTTATTCCGGAAACCTCCA
GAGCCTGGGCCGCTCGTGAAATTTCGATCCGCGTGAATTCAGCCCGTCTT
TCATGTTTCATTTATCCTTGATGATCGTTAATTCGCGCCTCCCTTCCACC
ACCCTCTCTTGCCTTCAAACAAGACGGTGGACCTGTTTGAAGGCAAGGAT
ATCGGACTCGTTGTGCGCTGTGTGTTCAGTCTAGGAAGCGCCGTTCAGCT
TACTTGCCCGGAGTACACTGGGCCTTCGCTGGGGGCGAAGCTTCACCAGG
TGAAAACGAAAAACTATGCTGTACTCCAGACGCAGGAGAGCCGCGTTGTT
TTGACCCCACACCTCGACTTGTTTCGCTCCAAAAGCAGGGGCGAGTGGGG
CGCGAGATGGTCGTAGAGAGAGAGACCACATCATGGTATGTTACGAGTTG
TTTTTCTCTTTCTCTCTCGTGACGCGCGATCCGCAGGCAAACAAGCGCGT
GTTTAACGAACAGCAGAAGCAGCAGGCCAGAGTCAACTCTTCATTTTCGA
AGATGACCATGGGATCAGCCCACATCATGGAGCGTCCGCCGGTATGACTT
ACATTCTTGAGTTCGCAAGGAGAAGTAGTACACAACGTTGCTTCCTTGCT
GTAGGGCATTTTCCTGAAAGTTCTTGCCCTGCTGTCTGCGCGCTTTTCTC
GATAAAGTCCTTGCCTTGCTCTCTGCGCACTTTTCTCGATAGATTCCCAA
CACAGGCATTACCTTTGGAGCCGTGAGTGCTGGCAAAGGCGACACGACGA
CAATGGGAAAACTCACCAAAGTAAGCAATTTGGTTGGTCTCTCTTGGACA
CTGTAGTGAAATTCGAAGTGGCTGGTAATCACAGCGAAGGGATACGCTAG
AATTTGAAATAACTTACTTAATTTTGACATTGCGGACGGTGACGCCCGCC
TCTCCTCGGACTTAAGGGCTCGCACGGGATTCAAGAGCGTCTCCCGTTGG
ACATTTTCAACAACATGACTTTTGGCAGGGACGCAGTCGGCACAGGCGAC
ACGACGGTGATATCGAAGGCAAGTTCACCCGTGTCTCGCAGGAGTCTTTT
AACGCCGCGTACATACCGGTTCAAGCAGATAAGACACCCTGCTATGTTCG
CCGTTGTACGTGTTAAGTCTTAACACATTTCTAATATTTTCATGATAATG
CGTGCTGCTTCAGATGTAAATTATTGACAGAGCAAACTTCATTTTCACAA
TCAGTATCAAGGTAGCGTTCGCTCGACTACGAGAGCGGTATTTCCTTTGT
TTGCGGGACAAAGTTAACGAAGTCTACTCCCCACCGGTCATTAACTCAGA
TATCGGCGGACTTCTCCGTGGACTGCCGTCGTTCCTTTGAAAGTTTATAG
GACCAGCACTGTTCTTGACGAAACCAACATGAAAACCCCATGCACTACTG
TCGAACGGTTGTTCAGGCTGCCTTGGGCTCCTTTGGAATCATGGACCGCA
ACTCATTTTCCAACGCTAACGACATTACTTTCGGTGCCTCCGCCAGCCAG
GGCACGCCGTTAGACAAAAAGGTATGAAAAGCCACCTCGAACGTAGGATC
ACTAGTTTGTCCCTCTAGACAACGACGCTGATGTTGAACGTGTTTTTGCT
CTTGCTCCTGACACTCTGAAACTTGTATTCCGAAAACGTACTACAAACTC
GCCGCGCTAATTTTCAACGGAATAATATTTAATGCCTTTCTTTGTGCAGG
CTTACGAGGCCCATGCGTCAAAGGAGACTGTCGCAGAGCCTGCTGTCAAA
CAGGCTGCGGCGGACTGTTCCGTCGCTAAGCACATGACGCCATTGTTGTT
CGGGTCCGATGTCGTGGAGAACAACAGGAACTGGTTTCAGTCTCGCAGCG
GATAAACATTCTCCAAAAGAAAAAAAGCGACACCAGTGGTTAAAATACTC
CAGAAATATGCTTTACATCTAAAGCTCAAAGTGTCCCATCAGTAATGCTG
CTTTCCCTAATATTTGTGTGACAAGAAATACCTGATACATGTATGTGTGG
TGAAGTTTCGTGTTTGTTGGAATATCAGACACCTGAATAAAATGTACCGG
GTATGTATTGTCAACTTCACGGGCGCTTAGAATTTCTGCACATGCCGGGG
GTGGGTTCGTGTGTGTTCTATTTTTCGATTTCATGATCACGCAATCTTCG
ATGTTTGTGTGGGCCCGTCGAGCAAGTTGTTGTTTTTGAAGTATGTGACG
TAAAAAGAGCTTGAGCTAAACAACATGGTGTCATCTTCGATGGTCGTCGA
GCAAGTTATTATTTTTCTTTAGAGTGTTCAGTAATATGTGACGTAAAAAA
AGACCTTATAGCTAAGCGATTTTGTATTATTGCCGTGCCGACTGCACCCT
GCAGAATCCGTATGTTTGCGGGTGACCGCGGAGAAAATAGAATGTATTGT
TGGCTGGTTGTGTGGCGTAGGTCTCGGCCGCGGGTTGGAGGAAGGGCGAC
TACCTTTAAGTGACCGCGAGGTGCTCACCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig123:209980..218909+

>mRNA_P-littoralis_Contig123.42.3 ID=mRNA_P-littoralis_Contig123.42.3|Name=mRNA_P-littoralis_Contig123.42.3|organism=Pylaiella littoralis U1_48|type=CDS|length=1002bp|location=Sequence derived from alignment at P-littoralis_Contig123:209980..218909+ (Pylaiella littoralis U1_48)
ATGGCGGCCTTCGGATCTCGCGGAGCCGGGTATGGACTGGACGCAGAACT
TTGCCGTCAGAGAGAGGCAAAGTACGATTACGATGCCGAGGATTCCGCGC
GGGCATGGATCGAGGCAGTCACCAATGAGCCGGTGAAGGGTCTTTTCGGA
GATGCCTTGAGAAACGGCGTTCTACTTTGCAAGTTGGTCAACACCATCAA
GCCGGGAGCGGTGCGAAGGGTGAACGAGTCGAGAATGCCTTTCAAGCAGA
TGGAAAACATATCAAACTTCCTGAAATCCTGCAGAGCGTTGGGTGTCGCG
GAGCACTCGCTGTTCGAGACGGTGGACCTGTTTGAAGGCAAGGATATCGG
ACTCGTTGTGCGCTGTGTGTTCAGTCTAGGAAGCGCCGTTCAGCTTACTT
GCCCGGAGTACACTGGGCCTTCGCTGGGGGCGAAGCTTCACCAGGCAAAC
AAGCGCGTGTTTAACGAACAGCAGAAGCAGCAGGCCAGAGTCAACTCTTC
ATTTTCGAAGATGACCATGGGATCAGCCCACATCATGGAGCGTCCGCCGA
TTCCCAACACAGGCATTACCTTTGGAGCCGTGAGTGCTGGCAAAGGCGAC
ACGACGACAATGGGAAAACTCACCAAAGGCTCGCACGGGATTCAAGAGCG
TCTCCCGTTGGACATTTTCAACAACATGACTTTTGGCAGGGACGCAGTCG
GCACAGGCGACACGACGGTGATATCGAAGGCAAGTTCACCCGCTGCCTTG
GGCTCCTTTGGAATCATGGACCGCAACTCATTTTCCAACGCTAACGACAT
TACTTTCGGTGCCTCCGCCAGCCAGGGCACGCCGTTAGACAAAAAGGCTT
ACGAGGCCCATGCGTCAAAGGAGACTGTCGCAGAGCCTGCTGTCAAACAG
GCTGCGGCGGACTGTTCCGTCGCTAAGCACATGACGCCATTGTTGTTCGG
GTCCGATGTCGTGGAGAACAACAGGAACTGGTTTCAGTCTCGCAGCGGAT
AA
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