mRNA_P-littoralis_Contig1225.12.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1225.12.1
Unique NamemRNA_P-littoralis_Contig1225.12.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1225.12.1 vs. uniprot
Match: A0A6H5JIR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIR5_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 1.940e-18
Identity = 37/58 (63.79%), Postives = 47/58 (81.03%), Query Frame = 2 
Query:  152 KYLIAKPRARVLYYIAGWLASRVWTHQRRHNLSPDWVRVVRHNTYQSS*EAIAHEPVL 325
            +YLI++ R +VLYY+ GW+ASR WTHQRR NLSPDW R+V HNTYQSS  A A +P++
Sbjct:  257 QYLISQSRGQVLYYVCGWMASRAWTHQRRRNLSPDWYRIVEHNTYQSSEMAKARDPMI 314
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BLAST of mRNA_P-littoralis_Contig1225.12.1 vs. uniprot
Match: A0A6H5JQL1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQL1_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 6.070e-18
Identity = 38/59 (64.41%), Postives = 47/59 (79.66%), Query Frame = 2 
Query:  149 KKYLIAKPRARVLYYIAGWLASRVWTHQRRHNLSPDWVRVVRHNTYQSS*EAIAHEPVL 325
            ++Y I K R +VLYYIAGW AS+ WTH+RRHNLS DWVRVV+HNT +SS EAI  + +L
Sbjct:  156 ERYQITKSRGQVLYYIAGWAASKAWTHKRRHNLSQDWVRVVQHNTRRSSGEAICTDSML 214
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BLAST of mRNA_P-littoralis_Contig1225.12.1 vs. uniprot
Match: A0A6H5KGF3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGF3_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 3.870e-17
Identity = 36/59 (61.02%), Postives = 45/59 (76.27%), Query Frame = 2 
Query:  149 KKYLIAKPRARVLYYIAGWLASRVWTHQRRHNLSPDWVRVVRHNTYQSS*EAIAHEPVL 325
            +++ I KP  +VLYYIAGW AS+ WTH RRHNLS DWVRVV+HNT +S  EAI  + +L
Sbjct:   67 ERHQITKPCGQVLYYIAGWAASKAWTHHRRHNLSQDWVRVVQHNTRRSRGEAICTDSML 125
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BLAST of mRNA_P-littoralis_Contig1225.12.1 vs. uniprot
Match: A0A6H5K201_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K201_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 5.050e-15
Identity = 36/53 (67.92%), Postives = 44/53 (83.02%), Query Frame = 2 
Query:  149 KKYLIAKPRARVLYYIAGWLASRVWTHQRRHNLSPDWVRVVRHNTYQSS*EAI 307
            ++Y I++PR +VLYYIAGW AS+  THQ RHNLS DWVRVV+HNT +SS EAI
Sbjct:  174 ERYQISRPRGQVLYYIAGWAASKALTHQARHNLSQDWVRVVQHNTRRSSREAI 226
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BLAST of mRNA_P-littoralis_Contig1225.12.1 vs. uniprot
Match: A0A6H5JX42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX42_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 2.590e-12
Identity = 32/53 (60.38%), Postives = 42/53 (79.25%), Query Frame = 2 
Query:  149 KKYLIAKPRARVLYYIAGWLASRVWTHQRRHNLSPDWVRVVRHNTYQSS*EAI 307
            ++Y I++PR +VL+ IAGW  S+  THQ RHNLS DWVRVV+HNT +SS EA+
Sbjct:   35 ERYQISRPRGQVLHDIAGWATSKALTHQARHNLSQDWVRVVQHNTRRSSREAM 87
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BLAST of mRNA_P-littoralis_Contig1225.12.1 vs. uniprot
Match: A0A6H5KKY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKY9_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 4.770e-7
Identity = 22/33 (66.67%), Postives = 27/33 (81.82%), Query Frame = 2 
Query:  152 KYLIAKPRARVLYYIAGWLASRVWTHQRRHNLS 250
            +Y I +PR +VLYY+AGW AS+ WTHQR HNLS
Sbjct:   26 RYQITQPRGQVLYYVAGWAASKAWTHQRSHNLS 58
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BLAST of mRNA_P-littoralis_Contig1225.12.1 vs. uniprot
Match: D7FVM7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVM7_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 6.050e-7
Identity = 28/60 (46.67%), Postives = 37/60 (61.67%), Query Frame = 2 
Query:  149 KKYLIAKPRARVLYYIAGWLASRVWTHQRRHNLSP-DWVRVVRHNTYQSS*EAIAHEPVL 325
            KK  + KPRA+VLYYI+GWL S+VWTH RR  +   +WV  V  N   S+  A+  +  L
Sbjct:  192 KKTRVTKPRAKVLYYISGWLLSKVWTHVRRQKIEEREWVSFVDLNKSASAGAAVEKDKEL 251
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BLAST of mRNA_P-littoralis_Contig1225.12.1 vs. uniprot
Match: A0A6H5KW14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW14_9PHAE)

HSP 1 Score: 50.1 bits (118), Expect = 9.200e-5
Identity = 24/44 (54.55%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:   46 HYLCCIINHVEEELYNFFVEERKNAIAIKLEYPSQKISDCKTAR 177
            HYLCCIIN V+EELY  FV+ER+ +  + L YP++ I    TAR
Sbjct:   97 HYLCCIINVVDEELYRVFVKEREKSNTVALTYPTE-IHKISTAR 139
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1225.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5JIR5_9PHAE1.940e-1863.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQL1_9PHAE6.070e-1864.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGF3_9PHAE3.870e-1761.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K201_9PHAE5.050e-1567.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JX42_9PHAE2.590e-1260.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKY9_9PHAE4.770e-766.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVM7_ECTSI6.050e-746.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KW14_9PHAE9.200e-554.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1225contigP-littoralis_Contig1225:15113..15776 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size328
Hectar predicted targeting categoryother localisation
Exons2
Cds size315
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789531.1322126-CDS-P-littoralis_Contig1225:15112..151931680789531.1322126-CDS-P-littoralis_Contig1225:15112..15193Pylaiella littoralis U1_48CDSP-littoralis_Contig1225 15113..15193 +
1680789531.185141-CDS-P-littoralis_Contig1225:15531..157651680789531.185141-CDS-P-littoralis_Contig1225:15531..15765Pylaiella littoralis U1_48CDSP-littoralis_Contig1225 15532..15765 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789531.201422-UTR-P-littoralis_Contig1225:15765..157761680789531.201422-UTR-P-littoralis_Contig1225:15765..15776Pylaiella littoralis U1_48UTRP-littoralis_Contig1225 15766..15776 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1225.12.1prot_P-littoralis_Contig1225.12.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1225 15113..15765 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1225.12.1

>prot_P-littoralis_Contig1225.12.1 ID=prot_P-littoralis_Contig1225.12.1|Name=mRNA_P-littoralis_Contig1225.12.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=105bp
VLEAGFKTAREEIALHYLCCIINHVEEELYNFFVEERKNAIAIKLEYPSQ
KISDCKTARESPVLHCRVVGEQGLDPSEKTQPFPRLGACRPPQHLPVQLG
GDCS*
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mRNA from alignment at P-littoralis_Contig1225:15113..15776+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1225.12.1 ID=mRNA_P-littoralis_Contig1225.12.1|Name=mRNA_P-littoralis_Contig1225.12.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=664bp|location=Sequence derived from alignment at P-littoralis_Contig1225:15113..15776+ (Pylaiella littoralis U1_48)
GTGTTGGAGGCAGGGTTCAAGACAGCGCGGGAGGAGATTGCATTGCACTA
CCTATGCTGCATCATCAATCACGTGGAGGAGGTGGGTTGATGCGGTCGTC
AATAGGAAGTGAGGAAGACATACCAGACGAAATTTGCCCAAGGATTACAA
TCTCCTTTCCGCAGCCGTAGTTGACTAAGATATAAACTCCATCCTCCCTC
TGTACGTTACAGCGCTGTGTATTTTGTATCGTCGGGGTACGCTATCTTTC
TGATTCCTTGTGTGTTGGAGCAATCATCGCTCCGAGCGCTTAGTTTTGGA
GACAACCATTCTGATTTTCTCTTCTATAGCTTGGACTCGACGGCCACGTA
GCTGAGGCACCCTCCCCGTGCCCGCGCTCCTCTCCTCGAACCGTTCCCCG
TCCCCCCCCGTTGCTGCAGGAGTTGTACAACTTCTTCGTGGAAGAGCGGA
AAAATGCCATCGCCATCAAGCTCGAGTACCCGAGTCAAAAAATATCTGAT
TGCAAAACCGCGCGCGAGAGTCCTGTACTACATTGCCGGGTGGTTGGCGA
GCAGGGTTTGGACCCATCAGAGAAGACACAACCTTTCCCCAGATTGGGTG
CGTGTCGTCCGCCACAACACTTACCAGTCCAGTTAGGAGGCGATTGCTCA
TGAACCTGTGCTTA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1225:15113..15776+

>mRNA_P-littoralis_Contig1225.12.1 ID=mRNA_P-littoralis_Contig1225.12.1|Name=mRNA_P-littoralis_Contig1225.12.1|organism=Pylaiella littoralis U1_48|type=CDS|length=315bp|location=Sequence derived from alignment at P-littoralis_Contig1225:15113..15776+ (Pylaiella littoralis U1_48)
GTGTTGGAGGCAGGGTTCAAGACAGCGCGGGAGGAGATTGCATTGCACTA
CCTATGCTGCATCATCAATCACGTGGAGGAGGAGTTGTACAACTTCTTCG
TGGAAGAGCGGAAAAATGCCATCGCCATCAAGCTCGAGTACCCGAGTCAA
AAAATATCTGATTGCAAAACCGCGCGCGAGAGTCCTGTACTACATTGCCG
GGTGGTTGGCGAGCAGGGTTTGGACCCATCAGAGAAGACACAACCTTTCC
CCAGATTGGGTGCGTGTCGTCCGCCACAACACTTACCAGTCCAGTTAGGA
GGCGATTGCTCATGA
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