mRNA_P-littoralis_Contig994.18.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig994.18.1
Unique NamemRNA_P-littoralis_Contig994.18.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig994.18.1 vs. uniprot
Match: A0A6H5L2M7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2M7_9PHAE)

HSP 1 Score: 160 bits (406), Expect = 8.180e-49
Identity = 81/117 (69.23%), Postives = 87/117 (74.36%), Query Frame = 1
Query:    1 KALESVRKDVECFLGILKGRFGILKLGILFQSLEDIDNMFFTCCTLHNMLHAFDELDEFEPTVEWGGKEGLHDPWDNPPLLDESTTGSTS-TSVDDDNANTKPVQEHFILKKALVAH 348
            KA ESVR+DVECF GILKGRF ILKLGILFQ    IDN+FFTCCT HN+LHAFD LDE E   +WGG+ GLHD WDN PLLDEST GSTS T  DDD   T P   H  LK AL+AH
Sbjct:    7 KAPESVREDVECFFGILKGRFRILKLGILFQDKNVIDNLFFTCCTSHNVLHAFDGLDELETVEDWGGRAGLHDAWDNDPLLDESTVGSTSPTPADDDGTTTIPEAAHEELKNALIAH 123          
BLAST of mRNA_P-littoralis_Contig994.18.1 vs. uniprot
Match: A0A6H5KML5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KML5_9PHAE)

HSP 1 Score: 155 bits (391), Expect = 1.960e-45
Identity = 82/120 (68.33%), Postives = 87/120 (72.50%), Query Frame = 1
Query:    1 KALESVRKDVECFLGILKGRFGILKLGILFQSLEDIDNMFFTCCTLHNMLHAFDELDEFEPTVEWGGKEGL--HDPWDNPPLLDESTTGSTS-TSVDDDNANTKPVQEHFILKKALVAHF 351
            KALESVRKDVE F GILKGRF ILKLGILFQ    IDN+FFTCCTLH+MLHAFD LDE E   EWGG+ GL  H  WDN PLLD+ST GSTS T  DDD   T P   H  LK AL+ HF
Sbjct:   12 KALESVRKDVEYFFGILKGRFRILKLGILFQHENVIDNLFFTCCTLHSMLHAFDGLDELETVKEWGGRAGLGLHGTWDNDPLLDDSTVGSTSPTPADDDGTTTTPQAAHEELKNALMTHF 131          
BLAST of mRNA_P-littoralis_Contig994.18.1 vs. uniprot
Match: A0A6H5JMK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMK5_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 4.360e-34
Identity = 59/89 (66.29%), Postives = 69/89 (77.53%), Query Frame = 1
Query:    1 KALESVRKDVECFLGILKGRFGILKLGILFQSLEDIDNMFFTCCTLHNMLHAFDELDEFEPTVEWGGKEGLHDPWDNPPLLDESTTGST 267
            + LESVRKDVECF GILKGRF ILKL + ++S EDIDN+F TCC LHNMLH FD +D FE  V+W G  GLHDPWD+ PL D ++ GST
Sbjct:   22 RTLESVRKDVECFFGILKGRFRILKLRLGYRSKEDIDNIFSTCCILHNMLHTFDGMDVFEEDVDWVGSAGLHDPWDHDPLTDFTSIGST 110          
BLAST of mRNA_P-littoralis_Contig994.18.1 vs. uniprot
Match: A0A6H5K9X5_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9X5_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 6.350e-34
Identity = 63/81 (77.78%), Postives = 65/81 (80.25%), Query Frame = 1
Query:    1 KALESVRKDVECFLGILKGRFGILKLGILFQSLEDIDNMFFTCCTLHNMLHAFDELDEFEPTVEWGGKEGLHDPWDNPPLL 243
            KAL SVRK VECF GILKGRF ILKLGILFQ    IDN+FFTCCTLHNMLHAFD LDE E   EWGG+ GLHD WDN PLL
Sbjct:  381 KALASVRKYVECFFGILKGRFRILKLGILFQDKNVIDNLFFTCCTLHNMLHAFDGLDELESAEEWGGRAGLHDAWDNDPLL 461          
BLAST of mRNA_P-littoralis_Contig994.18.1 vs. uniprot
Match: A0A6H5L135_9PHAE (Uncharacterized protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L135_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 1.180e-33
Identity = 58/89 (65.17%), Postives = 68/89 (76.40%), Query Frame = 1
Query:    1 KALESVRKDVECFLGILKGRFGILKLGILFQSLEDIDNMFFTCCTLHNMLHAFDELDEFEPTVEWGGKEGLHDPWDNPPLLDESTTGST 267
            + LESVRKDVECF  ILKGRF ILKL + ++S EDIDN+F TCC LHNMLH FD +D FE  V+W G  GLHDPWD+ PL D ++ GST
Sbjct:   32 RTLESVRKDVECFFDILKGRFRILKLRLGYRSKEDIDNIFSTCCILHNMLHTFDGMDVFEEDVDWVGSAGLHDPWDHDPLTDFTSIGST 120          
BLAST of mRNA_P-littoralis_Contig994.18.1 vs. uniprot
Match: A0A6H5K5C1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5C1_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 3.940e-32
Identity = 58/89 (65.17%), Postives = 70/89 (78.65%), Query Frame = 1
Query:    1 KALESVRKDVECFLGILKGRFGILKLGILFQSLEDIDNMFFTCCTLHNMLHAFDELDEFEPTVEWGGKEGLHDPWDNPPLLDESTTGST 267
            + LESVRKDVECF GILKGRF ILKL + ++S +DIDN+F+TCC LHNMLH FD +D FE  V+W G  GLHDPWD+ PL D ++ GST
Sbjct:  353 RTLESVRKDVECFFGILKGRFRILKLRLGYRSKKDIDNIFYTCCILHNMLHTFDGMDVFEEDVDWVGSAGLHDPWDHDPLTDFTSIGST 441          
BLAST of mRNA_P-littoralis_Contig994.18.1 vs. uniprot
Match: A0A6H5L7R0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7R0_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 5.950e-31
Identity = 60/118 (50.85%), Postives = 76/118 (64.41%), Query Frame = 1
Query:    1 KALESVRKDVECFLGILKGRFGILKLGILFQSLEDIDNMFFTCCTLHNMLHAFDELDEFEPTVEWGGKEGLHDPWDNPPLLDESTTGSTSTSVDDDNANTKPVQEHF-ILKKALVAHF 351
            K LESVRKDVECF GI+KGRF ILKL I +   EDIDN+FFTCC LHNMLH++D   E E    W G  GLH+ W++ P LD S+ G+  +S   ++     V+  F   +K L+A F
Sbjct:   69 KRLESVRKDVECFFGIVKGRFRILKLSIPYHKQEDIDNVFFTCCILHNMLHSYDNKSEMEEEPNWAGNAGLHNAWEHNPSLDLSSVGAKGSSASTEDVE---VESGFNTRRKQLIASF 183          
BLAST of mRNA_P-littoralis_Contig994.18.1 vs. uniprot
Match: A0A6H5JTC6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC6_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 2.070e-29
Identity = 59/118 (50.00%), Postives = 75/118 (63.56%), Query Frame = 1
Query:    1 KALESVRKDVECFLGILKGRFGILKLGILFQSLEDIDNMFFTCCTLHNMLHAFDELDEFEPTVEWGGKEGLHDPWDNPPLLDESTTGSTSTSVDDDNANTKPVQEHF-ILKKALVAHF 351
            K LESVRKDVECF GI+KG F ILKL I +   EDIDN+FFTCC LHNMLH++D   E E    W G  GLH+ W++ P LD S+ G+  +S   ++     V+  F   +K L+A F
Sbjct:  114 KRLESVRKDVECFFGIVKGLFRILKLSIPYHKQEDIDNVFFTCCILHNMLHSYDNKSEMEEEPNWAGNAGLHNAWEHNPSLDLSSVGAKGSSASTEDVE---VESGFNTRRKQLIASF 228          
BLAST of mRNA_P-littoralis_Contig994.18.1 vs. uniprot
Match: A0A6H5KZ66_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ66_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 3.020e-29
Identity = 56/77 (72.73%), Postives = 59/77 (76.62%), Query Frame = 1
Query:    1 KALESVRKDVECFLGILKGRFGILKLGILFQSLEDIDNMFFTCCTLHNMLHAFDELDEFEPTVEWGGKEGLHDPWDN 231
            KA ESVRKDVECF GIL GRF ILKLGI FQ    IDN+F TCCTLHNMLHAFD L+E E   EWG + GLHD WDN
Sbjct:  121 KAQESVRKDVECF-GILMGRFKILKLGIFFQDKNVIDNLFVTCCTLHNMLHAFDGLEELEIVEEWGARAGLHDAWDN 196          
BLAST of mRNA_P-littoralis_Contig994.18.1 vs. uniprot
Match: A0A6H5JQM6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM6_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 8.370e-29
Identity = 53/86 (61.63%), Postives = 62/86 (72.09%), Query Frame = 1
Query:    7 LESVRKDVECFLGILKGRFGILKLGILFQSLEDIDNMFFTCCTLHNMLHAFDELDEFEPTVEWGGKEGLHDPWDNPPLLDESTTGS 264
            LESVRKDVECF GILKGRF ILKL + +   E IDN+FFTCC LHNMLH FD LD F+   +W G  G HD W++ PL D ++ GS
Sbjct:  116 LESVRKDVECFFGILKGRFRILKLRMPYHKREYIDNIFFTCCILHNMLHTFDGLDVFDENTDWTGSAGHHDAWEHDPLTDYTSVGS 201          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig994.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L2M7_9PHAE8.180e-4969.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KML5_9PHAE1.960e-4568.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMK5_9PHAE4.360e-3466.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9X5_9PHAE6.350e-3477.78DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5L135_9PHAE1.180e-3365.17Uncharacterized protein n=5 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5C1_9PHAE3.940e-3265.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7R0_9PHAE5.950e-3150.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTC6_9PHAE2.070e-2950.00DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KZ66_9PHAE3.020e-2972.73DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JQM6_9PHAE8.370e-2961.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig994contigP-littoralis_Contig994:83857..84208 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FSK2
PFAMsPlant_tran
Model size352
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.61e-23
EggNOG OGs2E2RF@1|root,2S9YA@2759|Eukaryota
DescriptionPlant transposon protein
Cds size351
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791919.147102-CDS-P-littoralis_Contig994:83856..842071680791919.147102-CDS-P-littoralis_Contig994:83856..84207Pylaiella littoralis U1_48CDSP-littoralis_Contig994 83857..84207 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig994.18.1prot_P-littoralis_Contig994.18.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig994 83857..84207 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig994.18.1

>prot_P-littoralis_Contig994.18.1 ID=prot_P-littoralis_Contig994.18.1|Name=mRNA_P-littoralis_Contig994.18.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=117bp
KALESVRKDVECFLGILKGRFGILKLGILFQSLEDIDNMFFTCCTLHNML
HAFDELDEFEPTVEWGGKEGLHDPWDNPPLLDESTTGSTSTSVDDDNANT
KPVQEHFILKKALVAHF
back to top

mRNA from alignment at P-littoralis_Contig994:83857..84208+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig994.18.1 ID=mRNA_P-littoralis_Contig994.18.1|Name=mRNA_P-littoralis_Contig994.18.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=352bp|location=Sequence derived from alignment at P-littoralis_Contig994:83857..84208+ (Pylaiella littoralis U1_48)
AAAGCGCTGGAGAGCGTTCGCAAGGACGTCGAGTGTTTTCTCGGCATCTT GAAGGGCCGTTTTGGAATTTTGAAACTGGGAATTCTTTTCCAAAGCTTGG AAGACATCGACAACATGTTCTTTACGTGTTGTACGTTGCACAACATGTTG CATGCGTTCGATGAGCTTGACGAATTCGAGCCTACCGTGGAATGGGGGGG GAAGGAGGGTCTACACGATCCCTGGGACAACCCGCCTCTGTTAGATGAAA GCACCACAGGAAGCACTAGTACATCGGTCGACGATGACAACGCCAACACA AAGCCAGTACAAGAGCATTTCATATTGAAGAAAGCCCTCGTGGCACACTT TG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig994:83857..84208+

>mRNA_P-littoralis_Contig994.18.1 ID=mRNA_P-littoralis_Contig994.18.1|Name=mRNA_P-littoralis_Contig994.18.1|organism=Pylaiella littoralis U1_48|type=CDS|length=351bp|location=Sequence derived from alignment at P-littoralis_Contig994:83857..84208+ (Pylaiella littoralis U1_48)
AAAGCGCTGGAGAGCGTTCGCAAGGACGTCGAGTGTTTTCTCGGCATCTT
GAAGGGCCGTTTTGGAATTTTGAAACTGGGAATTCTTTTCCAAAGCTTGG
AAGACATCGACAACATGTTCTTTACGTGTTGTACGTTGCACAACATGTTG
CATGCGTTCGATGAGCTTGACGAATTCGAGCCTACCGTGGAATGGGGGGG
GAAGGAGGGTCTACACGATCCCTGGGACAACCCGCCTCTGTTAGATGAAA
GCACCACAGGAAGCACTAGTACATCGGTCGACGATGACAACGCCAACACA
AAGCCAGTACAAGAGCATTTCATATTGAAGAAAGCCCTCGTGGCACACTT
T
back to top