mRNA_P-littoralis_Contig99.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig99.5.1
Unique NamemRNA_P-littoralis_Contig99.5.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig99.5.1 vs. uniprot
Match: D7FJJ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJJ7_ECTSI)

HSP 1 Score: 140 bits (354), Expect = 9.570e-37
Identity = 89/187 (47.59%), Postives = 116/187 (62.03%), Query Frame = 1
Query:    7 RLERRVAVLQPQVDKLKKANTTAKKNAARHQRAAALLKEKVKGSSDGDGDGAAPEGMEGSRSEGGSAAEVGEDFFEQLKAHVKSKLKPDGSFGEGSARFFQKCLQHGNSLKSVGPIYSAAIEFSTGVRMKEDLNITCHRNTVKLYAVGINTLDGDKLRDAILKAPFLLVAGDESLRHGDKKFPIFVS 567
            RL+R+V  L P V  LK+  +  KK   R +     LK      +D    GA  E  E  R +GG      ED  + L+  +K++LKP G FGE +AR FQ  +Q G SL     +  + +  +TGVR+K+DLNITC RNTVK+ A+GI  LDG++L  AILKAPFLL+AGDESLR+GDKKFPIFV+
Sbjct:  108 RLQRKVDYLTPIVAGLKRQVSNEKKKTKRAKLNLGNLK------ADEPVGGAEQEEPEQEREKGGGELLSAEDEKKVLERVIKNRLKPGGKFGETAARLFQSFVQGGVSLNMTQQLLQSTMYHTTGVRLKQDLNITCARNTVKVLALGITQLDGNELVKAILKAPFLLIAGDESLRNGDKKFPIFVA 288          
BLAST of mRNA_P-littoralis_Contig99.5.1 vs. uniprot
Match: D7FHK1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHK1_ECTSI)

HSP 1 Score: 140 bits (354), Expect = 4.520e-36
Identity = 89/187 (47.59%), Postives = 116/187 (62.03%), Query Frame = 1
Query:    7 RLERRVAVLQPQVDKLKKANTTAKKNAARHQRAAALLKEKVKGSSDGDGDGAAPEGMEGSRSEGGSAAEVGEDFFEQLKAHVKSKLKPDGSFGEGSARFFQKCLQHGNSLKSVGPIYSAAIEFSTGVRMKEDLNITCHRNTVKLYAVGINTLDGDKLRDAILKAPFLLVAGDESLRHGDKKFPIFVS 567
            RL+R+V  L P V  LK+  +  KK   R +     LK      +D    GA  E  E  R +GG      ED  + L+  +K++LKP G FGE +AR FQ  +Q G SL     +  + +  +TGVR+K+DLNITC RNTVK+ A+GI  LDG++L  AILKAPFLL+AGDESLR+GDKKFPIFV+
Sbjct:  211 RLQRKVDYLTPIVAGLKRQVSNEKKKTKRAKLNLGNLK------ADEPVGGAEQEEPEQEREKGGGELLSAEDEKKVLERVIKNRLKPGGKFGETAARLFQSFVQGGVSLNMTQQLLQSTMYHTTGVRLKQDLNITCARNTVKVLALGITQLDGNELVKAILKAPFLLIAGDESLRNGDKKFPIFVA 391          
BLAST of mRNA_P-littoralis_Contig99.5.1 vs. uniprot
Match: A0A6H5JND1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JND1_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 1.050e-32
Identity = 64/127 (50.39%), Postives = 89/127 (70.08%), Query Frame = 1
Query:  187 RSEGGSAAEVGEDFFEQLKAHVKSKLKPDGSFGEGSARFFQKCLQHGNSLKSVGPIYSAAIEFSTGVRMKEDLNITCHRNTVKLYAVGINTLDGDKLRDAILKAPFLLVAGDESLRHGDKKFPIFVS 567
            + EGG      ED  + L   +K +LKP G FGE +AR F+  ++ G SL     +  + +  +TGV++K+DLNITC RNTVK+ A GI  LDG++L +A+L+APFLL+AGDESLR+GDKKFP+FV+
Sbjct:  119 KGEGGGELLSAEDEKKVLMRAIKKRLKPGGKFGETAARLFKSFVEGGVSLNMTPQLLQSTVFHATGVKLKQDLNITCARNTVKVLAFGITQLDGEELVEAVLRAPFLLIAGDESLRNGDKKFPVFVA 245          
BLAST of mRNA_P-littoralis_Contig99.5.1 vs. uniprot
Match: A0A6H5JNK4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNK4_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 4.740e-30
Identity = 81/189 (42.86%), Postives = 119/189 (62.96%), Query Frame = 1
Query:    7 RLERRVAVLQPQVDKLKKANTTAKKNAARHQRAAALLKEKVKGSSDGDGDGAAPEGMEGSRSEGGSAAEVGEDFFEQLKAHVKSKLKPDGSFGEGSARFFQKCLQHGNSLKSVGPIY--SAAIEFSTGVRMKEDLNITCHRNTVKLYAVGINTLDGDKLRDAILKAPFLLVAGDESLRHGDKKFPIFVS 567
            RL+R+V  L P V+ LK+  ++ KK     +RA A ++       + + + AAP G E  + EGG      ED  + L   +K +LKP G FGE +AR F+  ++ G SL     +   ++ +  +TGV++K+DLNITC RNTVK+ A+GI  LDG++L  A+L+APFLL+A DESLR+ DKKFP+FV+
Sbjct:  116 RLQRKVDYLGPLVEGLKRQVSSEKKKT---KRAKARVENLKANEPEEEPEQAAP-GEE--KGEGGGELLSAEDEKKVLMRAIKKRLKPGGKFGETAARLFKSFVEGGVSLNMTPQLLQPTSTVFHATGVQLKQDLNITCARNTVKVLALGITQLDGEELVKAVLRAPFLLIADDESLRNEDKKFPVFVA 298          
BLAST of mRNA_P-littoralis_Contig99.5.1 vs. uniprot
Match: A0A6H5L160_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L160_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 6.260e-29
Identity = 59/105 (56.19%), Postives = 76/105 (72.38%), Query Frame = 1
Query:  253 KSKLKPDGSFGEGSARFFQKCLQHGNSLKSVGPIYSAAIEFSTGVRMKEDLNITCHRNTVKLYAVGINTLDGDKLRDAILKAPFLLVAGDESLRHGDKKFPIFVS 567
            K++LKP G  GE +A+ FQ  +Q G SL     +  + +  +TGVR+K+DLNITC RNTVK+  +GI  LD  +L  AILKAPFLL+AGDESL +GDKKFPIFV+
Sbjct:  216 KNRLKPGGKIGETAAKLFQSFVQGGVSLNMTQQLLQSTLFHTTGVRLKQDLNITCARNTVKVLGLGITQLDEKELVKAILKAPFLLIAGDESLLNGDKKFPIFVA 320          
BLAST of mRNA_P-littoralis_Contig99.5.1 vs. uniprot
Match: A0A6H5K280_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K280_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 3.550e-27
Identity = 58/127 (45.67%), Postives = 85/127 (66.93%), Query Frame = 1
Query:  187 RSEGGSAAEVGEDFFEQLKAHVKSKLKPDGSFGEGSARFFQKCLQHGNSLKSVGPIYSAAIEFSTGVRMKEDLNITCHRNTVKLYAVGINTLDGDKLRDAILKAPFLLVAGDESLRHGDKKFPIFVS 567
            + EGG      ED  + L   +K +LKP G  GE +AR  +  ++ G SL +   +  + +  +TGV++K+ LNITC RNTVK+ A+GI  LDG++L  A+++APFLL+ GDESLR+ DKKFP+FV+
Sbjct:   51 KGEGGGELLSAEDEKKVLMRVIKKRLKPGGKNGETAARLSKSFVEGGVSLNTTPQLLQSTVFHATGVKLKQYLNITCPRNTVKVLALGITQLDGEELVKAVVRAPFLLIVGDESLRNRDKKFPVFVA 177          
BLAST of mRNA_P-littoralis_Contig99.5.1 vs. uniprot
Match: A0A6H5JYL8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYL8_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 4.370e-23
Identity = 75/183 (40.98%), Postives = 103/183 (56.28%), Query Frame = 1
Query:    7 RLERRVAVLQPQVDKLKKANTTAKKNAARHQRAAALLKEKVKGSSDGDGDGAAPEGMEGSRSEGGSAAEVGEDFFEQLKAHVKSKLKPDGSFGEGSARFFQKCLQHGNSLKSVGPIYSAAIEFSTGVRMKEDLNITCHRNTVKLYAVGINTLDGDKLRDAILKAPFLLVAGDESLRHGDKKFP 555
            RL+R+V  L P VD LK+  +  KK     +RA   L+++     +G   GA  E  E  + +GG      ED  + L+  +K++LKP G                G SL     +    +  +TGVR+K+DLNITC RNTVK+  +GI  LDG++L  AIL+APFLL+A DESLR+GDKKFP
Sbjct:  185 RLQRKVDYLAPIVDGLKRQVSYEKKKT---KRAKLNLEDRKAHEPEG---GAEQEEPEQEKGKGGGELLSAEDEKKVLERVIKNRLKPGG----------------GVSLSMTPQLLQFIMFHTTGVRLKQDLNITCARNTVKVLGLGITQLDGEELVKAILQAPFLLIADDESLRNGDKKFP 345          
BLAST of mRNA_P-littoralis_Contig99.5.1 vs. uniprot
Match: A0A6H5JNC8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNC8_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 1.970e-12
Identity = 44/97 (45.36%), Postives = 58/97 (59.79%), Query Frame = 1
Query:  280 FGEGSARFFQKCLQHGNSLKSVGPIYSAAIEFSTGVRMK-EDLNITCHRNTVKLYAVGINTLDGDKLRDAILKAPFLLVAGDESLRHGDKKFPIFVS 567
            +G   AR  Q+ L+ G     VG +  + +  +TGV +      +  H  TVK  A+GI  LD  +L   ILKAP+LL+AGDESLR GDKKFPIFV+
Sbjct:  306 YGLNLARLCQEYLEAGTPRCQVGRLVMSTLRLATGVELDVAGGKMKFHGTTVKRLALGIAHLDMAELIAMILKAPYLLIAGDESLRKGDKKFPIFVA 402          
BLAST of mRNA_P-littoralis_Contig99.5.1 vs. uniprot
Match: A0A6H5K2P4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2P4_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 2.530e-12
Identity = 44/98 (44.90%), Postives = 59/98 (60.20%), Query Frame = 1
Query:  277 SFGEGSARFFQKCLQHGNSLKSVGPIYSAAIEFSTGVRMK-EDLNITCHRNTVKLYAVGINTLDGDKLRDAILKAPFLLVAGDESLRHGDKKFPIFVS 567
            S+G   A   Q+ L+ G  L  VG +  + +  +TGV +      +  H  TVK  A+GI  L+  +L   ILKAP+LL+AGDESLR GDKKFPIFV+
Sbjct:  165 SYGLNLAGLCQEYLEAGTPLCQVGRLVMSTLRLATGVELDVAGGKMKFHGTTVKRLALGIAHLNMAELIAMILKAPYLLIAGDESLRKGDKKFPIFVA 262          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig99.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7FJJ7_ECTSI9.570e-3747.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FHK1_ECTSI4.520e-3647.59Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5JND1_9PHAE1.050e-3250.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNK4_9PHAE4.740e-3042.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L160_9PHAE6.260e-2956.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K280_9PHAE3.550e-2745.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYL8_9PHAE4.370e-2340.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNC8_9PHAE1.970e-1245.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2P4_9PHAE2.530e-1244.90Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig99contigP-littoralis_Contig99:32111..33256 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size569
Hectar predicted targeting categoryother localisation
Exons2
Cds size567
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791910.0904055-CDS-P-littoralis_Contig99:32110..325931680791910.0904055-CDS-P-littoralis_Contig99:32110..32593Pylaiella littoralis U1_48CDSP-littoralis_Contig99 32111..32593 -
1680791910.1062965-CDS-P-littoralis_Contig99:33172..332561680791910.1062965-CDS-P-littoralis_Contig99:33172..33256Pylaiella littoralis U1_48CDSP-littoralis_Contig99 33173..33256 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig99.5.1prot_P-littoralis_Contig99.5.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig99 32111..33256 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig99.5.1

>prot_P-littoralis_Contig99.5.1 ID=prot_P-littoralis_Contig99.5.1|Name=mRNA_P-littoralis_Contig99.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=189bp
VTRLERRVAVLQPQVDKLKKANTTAKKNAARHQRAAALLKEKVKGSSDGD
GDGAAPEGMEGSRSEGGSAAEVGEDFFEQLKAHVKSKLKPDGSFGEGSAR
FFQKCLQHGNSLKSVGPIYSAAIEFSTGVRMKEDLNITCHRNTVKLYAVG
INTLDGDKLRDAILKAPFLLVAGDESLRHGDKKFPIFVS
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mRNA from alignment at P-littoralis_Contig99:32111..33256-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig99.5.1 ID=mRNA_P-littoralis_Contig99.5.1|Name=mRNA_P-littoralis_Contig99.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1146bp|location=Sequence derived from alignment at P-littoralis_Contig99:32111..33256- (Pylaiella littoralis U1_48)
GTGACGCGGCTGGAGAGGAGGGTGGCTGTTCTTCAGCCGCAAGTGGACAA GCTGAAGAAGGCTAACACTACAGCGAAGAAAAACGTGTGCTGCGTGTCGT GCGTTGTGTGGTTCGGTTGTGCTTTTTTTTCCAGTTTTAGTTTCGCTTTT TTTCAGTTCTTTCTATTGCCGTAATCTATGTATATAGTCATATATATTTT TGGTTGACTCCTACTGCTGTATACCAAGTATCATATATACATATTTAATA TGTTATATATGTACATATATGTTTTGTTGAGACTCCTGCTGCTGCTGCTG CTGCTTACTGCTGCTTCTGTTGCTCTCGACTGCTGCGGCCCCCTCTGCTG TTTTACTGATTCCTTCTTGGTTTTCTCTCGCGTATCTCATGTGGTTCGTG TGTAGCTGCTGCTGGTCCTGCTCTTGACTGCTGTACTCTTCGCCTCTCTC AAATCCGACTGACGGTACTGAACATATTATTTGTGTCAGTCAGTTGGTTC GATCAGAAGCGACGCGGCGGTGCTGCTGCTGCTGCTGTACGAGTATTTGT TTCGGTGTGTCAGTCTTGAGAAATACCAGGTATAATGTTTTTTTCCTTTT TTTGCTGCGGATGACGAATTACTCTCTCCCACCCCTCCCCTGCTGTCTTT TCGAATTACGTAGGCTGCACGACACCAACGAGCCGCTGCGTTGTTGAAAG AGAAGGTGAAAGGCAGCAGCGATGGAGATGGAGATGGTGCGGCACCTGAG GGGATGGAAGGTTCGAGGTCAGAAGGGGGCAGTGCAGCCGAAGTTGGGGA GGATTTTTTCGAGCAGTTGAAAGCCCATGTCAAGAGCAAACTCAAACCAG ACGGTAGTTTTGGTGAGGGTTCAGCACGCTTTTTTCAGAAGTGTTTGCAG CATGGCAACTCCCTCAAGTCAGTGGGTCCCATCTACTCAGCTGCAATTGA GTTCTCGACCGGGGTGCGGATGAAGGAGGATCTCAACATCACATGCCATC GCAACACGGTCAAGCTCTACGCTGTGGGCATCAACACGCTGGATGGAGAC AAGCTTCGCGATGCGATTCTCAAGGCACCTTTCCTGCTTGTAGCGGGAGA CGAATCCCTTCGTCATGGAGATAAAAAATTCCCGATTTTCGTGTCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig99:32111..33256-

>mRNA_P-littoralis_Contig99.5.1 ID=mRNA_P-littoralis_Contig99.5.1|Name=mRNA_P-littoralis_Contig99.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=567bp|location=Sequence derived from alignment at P-littoralis_Contig99:32111..33256- (Pylaiella littoralis U1_48)
GTGACGCGGCTGGAGAGGAGGGTGGCTGTTCTTCAGCCGCAAGTGGACAA
GCTGAAGAAGGCTAACACTACAGCGAAGAAAAACGCTGCACGACACCAAC
GAGCCGCTGCGTTGTTGAAAGAGAAGGTGAAAGGCAGCAGCGATGGAGAT
GGAGATGGTGCGGCACCTGAGGGGATGGAAGGTTCGAGGTCAGAAGGGGG
CAGTGCAGCCGAAGTTGGGGAGGATTTTTTCGAGCAGTTGAAAGCCCATG
TCAAGAGCAAACTCAAACCAGACGGTAGTTTTGGTGAGGGTTCAGCACGC
TTTTTTCAGAAGTGTTTGCAGCATGGCAACTCCCTCAAGTCAGTGGGTCC
CATCTACTCAGCTGCAATTGAGTTCTCGACCGGGGTGCGGATGAAGGAGG
ATCTCAACATCACATGCCATCGCAACACGGTCAAGCTCTACGCTGTGGGC
ATCAACACGCTGGATGGAGACAAGCTTCGCGATGCGATTCTCAAGGCACC
TTTCCTGCTTGTAGCGGGAGACGAATCCCTTCGTCATGGAGATAAAAAAT
TCCCGATTTTCGTGTCG
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