mRNA_P-littoralis_Contig988.12.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig988.12.1
Unique NamemRNA_P-littoralis_Contig988.12.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig988.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig988contigP-littoralis_Contig988:41658..42310 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size637
Hectar predicted targeting categorysignal anchor
Exons2
Cds size348
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791907.4800956-CDS-P-littoralis_Contig988:41657..419351680791907.4800956-CDS-P-littoralis_Contig988:41657..41935Pylaiella littoralis U1_48CDSP-littoralis_Contig988 41658..41935 -
1680791907.4911993-CDS-P-littoralis_Contig988:41951..420211680791907.4911993-CDS-P-littoralis_Contig988:41951..42021Pylaiella littoralis U1_48CDSP-littoralis_Contig988 41952..42021 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791907.5057082-UTR-P-littoralis_Contig988:42021..423101680791907.5057082-UTR-P-littoralis_Contig988:42021..42310Pylaiella littoralis U1_48UTRP-littoralis_Contig988 42022..42310 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig988.12.1prot_P-littoralis_Contig988.12.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig988 41658..42021 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig988.12.1

>prot_P-littoralis_Contig988.12.1 ID=prot_P-littoralis_Contig988.12.1|Name=mRNA_P-littoralis_Contig988.12.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=116bp
MFLKLRLPETVCLERSTPSASACGKRVIICALVFVLVVATARTFTMYLFW
NYLTRSQTFSGFFLSRPHHFLQHFHIYFVLRSTWYVFIPGNVTPQASSIS
IASRVDAARHRFPRQ*
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mRNA from alignment at P-littoralis_Contig988:41658..42310-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig988.12.1 ID=mRNA_P-littoralis_Contig988.12.1|Name=mRNA_P-littoralis_Contig988.12.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=653bp|location=Sequence derived from alignment at P-littoralis_Contig988:41658..42310- (Pylaiella littoralis U1_48)
CCAGCTGTACATCCCCCTCACCTGATATGTGGCATTTGACATCGTTCCGA
AACAGCCGGGACAGACACAGACCAGGTGTATCAAAAAGTACACATATACA
TACACAGAGGTGCGTGATGTGCAAACACGATGTAGACGAGGAACAAGAGA
GGAGGTCGTGCGAATGCTACATAACGCGTGCGTCCTGGTTTTTCAGTGCT
GAAATCTTACCTCGGCGACCGAGGCCAGGTAGTCGCAAAGCCTCCAGGAG
GATGGGGAGGGGGAGGGGGTGTGCTATGTACTGGGATTCATGTTTCTCAA
ACTAAGGTTGCCTGAGACAGTTTGCCTCGAGCGTAGTACGCCTTCGGCCT
CTGCGTGCGGTGCAAGAGCCGAGAGGGAAGCGCGTGATCATATGTGCGCT
GGTCTTTGTATTGGTTGTCGCTACCGCACGTACGTTCACGATGTACCTGT
TTTGGAATTACTTGACACGCTCGCAGACTTTCAGCGGGTTTTTCCTTTCG
AGACCCCATCATTTTCTCCAACACTTTCATATATACTTCGTACTCCGGAG
TACCTGGTATGTATTTATCCCTGGAAATGTGACACCACAGGCATCATCAA
TCAGTATCGCCTCCCGTGTGGACGCTGCAAGGCACCGCTTCCCTCGCCAG
TAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig988:41658..42310-

>mRNA_P-littoralis_Contig988.12.1 ID=mRNA_P-littoralis_Contig988.12.1|Name=mRNA_P-littoralis_Contig988.12.1|organism=Pylaiella littoralis U1_48|type=CDS|length=348bp|location=Sequence derived from alignment at P-littoralis_Contig988:41658..42310- (Pylaiella littoralis U1_48)
ATGTTTCTCAAACTAAGGTTGCCTGAGACAGTTTGCCTCGAGCGTAGTAC
GCCTTCGGCCTCTGCGTGCGGGAAGCGCGTGATCATATGTGCGCTGGTCT
TTGTATTGGTTGTCGCTACCGCACGTACGTTCACGATGTACCTGTTTTGG
AATTACTTGACACGCTCGCAGACTTTCAGCGGGTTTTTCCTTTCGAGACC
CCATCATTTTCTCCAACACTTTCATATATACTTCGTACTCCGGAGTACCT
GGTATGTATTTATCCCTGGAAATGTGACACCACAGGCATCATCAATCAGT
ATCGCCTCCCGTGTGGACGCTGCAAGGCACCGCTTCCCTCGCCAGTAG
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