mRNA_P-littoralis_Contig959.24.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig959.24.1
Unique NamemRNA_P-littoralis_Contig959.24.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig959.24.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig959contigP-littoralis_Contig959:80461..81056 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size162
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size156
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791872.8910072-UTR-P-littoralis_Contig959:80460..804641680791872.8910072-UTR-P-littoralis_Contig959:80460..80464Pylaiella littoralis U1_48UTRP-littoralis_Contig959 80461..80464 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791872.903901-CDS-P-littoralis_Contig959:80464..805421680791872.903901-CDS-P-littoralis_Contig959:80464..80542Pylaiella littoralis U1_48CDSP-littoralis_Contig959 80465..80542 +
1680791872.9215002-CDS-P-littoralis_Contig959:80978..810561680791872.9215002-CDS-P-littoralis_Contig959:80978..81056Pylaiella littoralis U1_48CDSP-littoralis_Contig959 80979..81056 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig959.24.1prot_P-littoralis_Contig959.24.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig959 80465..81056 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig959.24.1

>prot_P-littoralis_Contig959.24.1 ID=prot_P-littoralis_Contig959.24.1|Name=mRNA_P-littoralis_Contig959.24.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=52bp
MERVAFCTKEFPGRHTAEKIEPWLRQVTVDAFGGIVGAEHCEPSNIYISA
TV
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mRNA from alignment at P-littoralis_Contig959:80461..81056+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig959.24.1 ID=mRNA_P-littoralis_Contig959.24.1|Name=mRNA_P-littoralis_Contig959.24.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=596bp|location=Sequence derived from alignment at P-littoralis_Contig959:80461..81056+ (Pylaiella littoralis U1_48)
TGGTATGGAGCGTGTGGCGTTCTGCACGAAGGAGTTCCCCGGAAGGCATA
CTGCAGAGAAGATCGAGCCATGGCTTCGACAGGTGACACTCCATGTTATT
TTTTAGGGCTGTGGTGTAATTCTTTGATTTTTTGTTGTTGTTTTCAATAC
GTTGTTTTTGGTGTATGTATCCACCACGCTGTGTGTCCTTGCCTCTACCT
TCCAAAAACAAAACACGCATTTGGTAAGCTACAAACAAGTCAGGTGTTCG
GCTCAACAACATCGTGTTCGGGTTCGTTTTTGCAAGTTTATTGGTGGCGC
ACACATAATGTTGCTCTCTGGGTAGGTTTCATGTGGTGGTGAGTCCGAAC
AACAATGGAGGGAGCGGATAGAGCGCTGCTGTGTCGGCGTGCATGTATTC
GATTTGATGTGTGCGTGTTAGTATTTCGTATTTCTCTTTTGGCCGTGTCT
GTCGCGAGTGTTGAAAGAAAAACAACTGCACTCCACATTCTTCACCTCTG
CTCGCCGTGCGTGAACAGGTTACCGTTGACGCTTTTGGCGGTATCGTAGG
AGCCGAGCACTGCGAGCCATCAAACATCTACATCTCTGCCACGGTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig959:80461..81056+

>mRNA_P-littoralis_Contig959.24.1 ID=mRNA_P-littoralis_Contig959.24.1|Name=mRNA_P-littoralis_Contig959.24.1|organism=Pylaiella littoralis U1_48|type=CDS|length=156bp|location=Sequence derived from alignment at P-littoralis_Contig959:80461..81056+ (Pylaiella littoralis U1_48)
ATGGAGCGTGTGGCGTTCTGCACGAAGGAGTTCCCCGGAAGGCATACTGC
AGAGAAGATCGAGCCATGGCTTCGACAGGTTACCGTTGACGCTTTTGGCG
GTATCGTAGGAGCCGAGCACTGCGAGCCATCAAACATCTACATCTCTGCC
ACGGTC
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