mRNA_P-littoralis_Contig959.18.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig959.18.1 vs. uniprot
Match: D7FZH3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZH3_ECTSI) HSP 1 Score: 283 bits (723), Expect = 4.670e-84 Identity = 134/190 (70.53%), Postives = 164/190 (86.32%), Query Frame = 3
Query: 366 GVSRLWGLYLSSLEKRPLLTKSLSTGVISSTSNLIEQTLSTAAFSLADWAAFTLVGAVFIASSLHYWYLFLERVANSKAVTSRVRSKWGRVLVQIAVDQSVGASFINSGYFALHTIFLALLTGTVFPLPELGSSIWEKVSSRYVTMIISNAKLWPWVSFFNFSFVPMNLRVLVTNCVAVFWDYLMSKWCK 935
GVSR+WG YL +LE RPLLTKSLS+GVIS T+NLIEQTLS AAFSL DW+AFTLVGAVFI + LH+WY FLER+ NS+ +TSR++SKWGRV++Q+ +DQ++GAS +NSGYFA HT+ LA LTG FPLPELGSSI EKV+SRYV M+++N +LWPWVSF NF+F+P +LRVLV+N VAV W YLMSKWC+
Sbjct: 100 GVSRMWGRYLHALENRPLLTKSLSSGVISGTANLIEQTLSPAAFSLVDWSAFTLVGAVFIGTVLHHWYGFLERMGNSEVITSRIKSKWGRVVLQVVLDQTIGASLVNSGYFACHTVCLAGLTGRAFPLPELGSSIVEKVTSRYVVMMMNNFRLWPWVSFVNFAFIPADLRVLVSNFVAVLWGYLMSKWCR 289
BLAST of mRNA_P-littoralis_Contig959.18.1 vs. uniprot
Match: A0A6H5L3N7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3N7_9PHAE) HSP 1 Score: 226 bits (575), Expect = 8.890e-63 Identity = 107/189 (56.61%), Postives = 141/189 (74.60%), Query Frame = 3
Query: 369 VSRLWGLYLSSLEKRPLLTKSLSTGVISSTSNLIEQTLSTAAFSLADWAAFTLVGAVFIASSLHYWYLFLERVANSKAVTSRVRSKWGRVLVQIAVDQSVGASFINSGYFALHTIFLALLTGTVFPLPELGSSIWEKVSSRYVTMIISNAKLWPWVSFFNFSFVPMNLRVLVTNCVAVFWDYLMSKWCK 935
+S +WG YL +L +PLLTK+LS+GV+S T+N+IEQTLS A F+ W F+L G VF LHYWY L+R+ N+KAVTSRV KWGRV Q+ VD +GA+ +N GYFA+H IF ++ TG +FPLP LG I EK++SRY M+++N ++WP V F NF+FVP +LRVLV+N VAVFW YL+SKWC+
Sbjct: 133 LSVVWGRYLGALNDQPLLTKALSSGVVSGTANIIEQTLSAAKFNWEGWVVFSLTGIVFKGMFLHYWYNILDRLGNAKAVTSRVPGKWGRVSFQVLVDTIIGATLLNCGYFAVHEIFSSITTGRLFPLPGLGLRIVEKIASRYSVMMVANCRVWPPVVFLNFAFVPPDLRVLVSNFVAVFWGYLLSKWCR 321
BLAST of mRNA_P-littoralis_Contig959.18.1 vs. uniprot
Match: D7FZH5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZH5_ECTSI) HSP 1 Score: 209 bits (533), Expect = 1.190e-57 Identity = 107/212 (50.47%), Postives = 138/212 (65.09%), Query Frame = 3
Query: 372 SRLWGLYLSSLEKRPLLTKSLSTGVISSTSNLIEQTLSTAAFSLADWAAFTLVGAVFIASSLHYWYLFLERV------------------------ANSKAVTSRVRSKWGRVLVQIAVDQSVGASFINSGYFALHTIFLALLTGTVFPLPELGSSIWEKVSSRYVTMIISNAKLWPWVSFFNFSFVPMNLRVLVTNCVAVFWDYLMSKWCK 935
S +WG YL++L +PLLTK+LS+GV+S T+N+IEQTLS A F W F+L G VF LHYWY L+R N+K VTSRV KWGRV Q VD +GA+ +N GYFA+H IF A+ TG +FPLPELG I +K++SRY M+++N ++WP V F NF+FVP +LRVLV+N VAVFW YL+SKWC+
Sbjct: 60 SVVWGRYLNALNDQPLLTKALSSGVVSGTANIIEQTLSAAKFDWGGWVVFSLTGIVFKGMFLHYWYNILDRALACCTRWPSLPLLLRGVKSHGQVEGNAKGVTSRVPGKWGRVSFQGMVDTIIGATLLNCGYFAVHEIFSAITTGRLFPLPELGLRIVKKIASRYSVMMVANCRVWPPVVFLNFAFVPPDLRVLVSNFVAVFWGYLLSKWCR 271
BLAST of mRNA_P-littoralis_Contig959.18.1 vs. uniprot
Match: A0A835YMP8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMP8_9STRA) HSP 1 Score: 139 bits (351), Expect = 3.160e-33 Identity = 81/208 (38.94%), Postives = 116/208 (55.77%), Query Frame = 3
Query: 321 MVANGAPGEKKSRPGGVSRLWGLYLSSLEKRPLLTKSLSTGVISSTSNLIEQTLSTAA------FSLADWAAFTLVGAVFIASSLHYWYLFLE-RVANSKAVTSRVRSKWGRVLVQIAVDQSVGASFINSGYFALHTIFLALLTGTVFPLPELGSSIWEKVSSRYVTMIISNAKLWPWVSFFNFSFVPMNLRVLVTNCVAVFWDYLMS 923
M G K SR G +LW YL L++RPL+TK+ ++ +I + I Q L F A + ++++HYWY FL+ +VAN V + KW RV Q+AVDQ+VG + +N+G++ +HTI A++ G VFPL L +I K+S M+I+N KLWP +F NFS VP LRVL N VA+FW+ +S
Sbjct: 57 MAVQGGGDAKPSR-GAPQQLWNKYLGQLDRRPLITKAWTSTIIGCIGDTIAQVLEARTKGIPFVFDTQRTAIYIFCAVAIGSTAVHYWYNFLDQKVANPNTV----KGKWNRVFRQLAVDQTVGCTVLNAGFYIVHTIVSAVVMGRVFPLGALADTITGKLSREMWPMLINNWKLWPAANFINFSLVPPQLRVLFANFVAIFWNIYLS 259
BLAST of mRNA_P-littoralis_Contig959.18.1 vs. uniprot
Match: C1DZV4_MICCC (Uncharacterized protein n=2 Tax=Micromonas TaxID=38832 RepID=C1DZV4_MICCC) HSP 1 Score: 95.5 bits (236), Expect = 1.620e-17 Identity = 62/186 (33.33%), Postives = 96/186 (51.61%), Query Frame = 3
Query: 378 LWGLYLSSLEKRPLLTKSLSTGVISSTSNLIEQTL-STAAFSLADW---AAFTLVGAVFIASSLHYWYLFLERVANSKAVTSRVRSKWGRVLVQIAVDQSVGASFINSGYFALHTIFLALLTGTVFPLPELGSSIWEKVSSRYVTMIISNAKLWPWVSFFNFSFVPMNLRVLVTNCVAVFWDYLMS 923
LW LYLSSLEK PLLTK +++G+++S +L Q + AA DW FT +GA + LH+WY L ++ T V S + +A+DQ V A FLA+ ++F + +++ K+ + +++N K+W F NF FVP+NL+V N +A+ W+ MS
Sbjct: 130 LWVLYLSSLEKNPLLTKCVTSGILNSAGDLFAQFMFEDAASKGCDWKRAGVFTFLGAALVGPCLHFWYTNLNKIV---VATGAVGS--AAAVTSLALDQLVFAP-----------TFLAVFIASLFTIEGNAAAVVPKLKQDWSQTVVANWKVWVPFQFLNFRFVPVNLQVGAANVIALLWNTYMS 299
BLAST of mRNA_P-littoralis_Contig959.18.1 vs. uniprot
Match: A0A7S1MV25_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1MV25_HEMAN) HSP 1 Score: 89.7 bits (221), Expect = 1.940e-16 Identity = 65/219 (29.68%), Postives = 106/219 (48.40%), Query Frame = 3
Query: 324 VANGAPGEKKSRPGGVS--RLWGLYLSSLEKRPLLTKSLSTGVISSTSNLIEQTLSTAAFSLADWA---AFTLVGAVFIASSLHYWYLFLERVANSKAVTSRVRSKWGRVLVQIAVDQSVGASFINSGYFALHTIFLALLTGTVFPLPE--------------LGSSIWEKVSSRYVTMIISNAKLWPWVSFFNFSFVPMNLRVLVTNCVAVFWDYLMS 923
+ G G++ S G +LW Y+ L+ PL T+ ++ GVIS+ +++ QTL S+ D F++ GA+ + WY +ER V + +W L ++A+DQS+ +F+ + F TI L+ G F + + L S EKV V +I N K+WP NF+ VP+ +VL NCVAV+W++++S
Sbjct: 1 ASGGGGGDEGSEESGWGPLQLWAKYIKLLDTAPLKTRIVTGGVISAAGDVMSQTLEGVKLSVLDLKRLIVFSMWGAIGFTPAGFKWYNLIERT-----VPKDIPVRW---LAKMAMDQSIFPAFMTTVTFMSLTILEGLVAGVGFTVDKGLFKTGEKIKGLGVLFSEGVEKVQKTLVPTLIENYKVWPAAQVLNFAVVPLKFQVLFVNCVAVWWNFVLS 211
BLAST of mRNA_P-littoralis_Contig959.18.1 vs. uniprot
Match: F0Y6G4_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y6G4_AURAN) HSP 1 Score: 89.7 bits (221), Expect = 2.700e-16 Identity = 60/188 (31.91%), Postives = 95/188 (50.53%), Query Frame = 3
Query: 375 RLWGLYLSSLEKRPLLTKSLSTGVISSTSNLIEQTLSTAAFSLADWAAFTLVGAVFIASSLHYWYLFLERVANSKAVTSRVRSKWGRVLVQIAVDQSVGASFINSGYF-----ALHTIFLALLTGTVFPLPELGSSIWEKVSSRYVTMIISNAKLWPWVSFFNFSFVPMNLRVLVTNCVAVFWDYLMS 923
RL Y + L + PL TK S+G+ S+ + + Q ++ AF A+F LVGA + A LH WY L A + + +W VL+Q+ ++QS+GA +N+G+F A + L L T+ + +Y+ ++ +N +WP S N +FVP+ RVL N VAV W ++S
Sbjct: 47 RLVAWYDAQLRRHPLRTKVASSGLASAVGDAVAQAVTGGAFDARRCASFALVGAAYFAPILHGWYEVLA--ARERRWRADGMGRWPSVLLQLLLNQSLGALTVNAGFFFALAVAEDALALDLSVRTL-------EGARRALGDQYLLVMRANWLVWPLPSLVNLAFVPLRYRVLFMNAVAVVWKTILS 225
BLAST of mRNA_P-littoralis_Contig959.18.1 vs. uniprot
Match: A0A0X3PLH9_SCHSO (Protein Mpv17 n=4 Tax=Schistocephalus solidus TaxID=70667 RepID=A0A0X3PLH9_SCHSO) HSP 1 Score: 84.0 bits (206), Expect = 8.870e-15 Identity = 56/186 (30.11%), Postives = 94/186 (50.54%), Query Frame = 3
Query: 372 SRLWGLYLSSLEKRPLLTKSLSTGVISSTSNLIEQTL--STAAFSLADWAAFTLVGAVFIASSLHYWYLFLERVANSKAVTSRVRSKWGRVLVQIAVDQSVGASFINSGYFALHTIFLALLTGTVFPLPELGSSIWEKVSSRYVTMIISNAKLWPWVSFFNFSFVPMNLRVLVTNCVAVFWDYLMS 923
++ W YL L+K PL T+ +ST +I S+ ++I Q + +S + F ++G F+ + HYWY F++R+ V R L +A DQ F+ + I L LT + + E + + + Y+ + N ++WP + F NF+ VP++LRVLV N VA+FW+ +S
Sbjct: 7 NKAWSGYLRLLKKYPLQTQCISTAIIMSSGDIIAQKIVERQPTYSPSRTLKFGMIGMCFVGPTFHYWYNFIDRIYTGTKVV--------RSLKMVASDQ-----FLMAPCMVFSIIGLVGLTKN-WSIDEAKTGLKD----NYIRAMFMNIRIWPPIQFINFTVVPVHLRVLVVNFVALFWNTYLS 174
BLAST of mRNA_P-littoralis_Contig959.18.1 vs. uniprot
Match: A0A2P6V4W2_9CHLO (Peroxisomal membrane PMP22 isoform A n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V4W2_9CHLO) HSP 1 Score: 87.8 bits (216), Expect = 9.490e-15 Identity = 62/190 (32.63%), Postives = 97/190 (51.05%), Query Frame = 3
Query: 363 GGVSRL-WGLYLSSLEKRPLLTKSLSTGVISSTSNLIEQTLSTAAFSLADWA---AFTLVGAVFIASSLHYWYLFLERVANSKAVTSRVRSKWGRVLVQIAVDQSVGASFINSGYFALHTIFLALLTGTVFPLPELGSSIWE---KVSSRYVTMIISNAKLWPWVSFFNFSFVPMNLRVLVTNCVAVFWD 911
GGV L W Y + LE+RPL+TKS++ G ++ S+L+ Q L+ +A S +W A L G ++ + HYW FLE++ +K R K +AVDQ F+N+ +F++ ++ V G S+ KVS + + + ++WP SF + +VP+ LRVL NCVA W
Sbjct: 3 GGVLELAWRRYTTQLERRPLVTKSVTAGTMAGLSDLLAQRLTASAGSTFNWRRTLAIALYGGLWAGPASHYWQAFLEKLFPNKKDPLRSLKK-------VAVDQLTFGPFVNA-------LFMSYMSAVVE-----GRSLAATRAKVSHEFTAVQARSWRVWPLASFVSQQYVPLQLRVLWLNCVAFLWS 173
BLAST of mRNA_P-littoralis_Contig959.18.1 vs. uniprot
Match: D7G6L5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6L5_ECTSI) HSP 1 Score: 85.9 bits (211), Expect = 1.820e-14 Identity = 62/217 (28.57%), Postives = 105/217 (48.39%), Query Frame = 3
Query: 330 NGAPGEKKSRPGGVSRLWGLYLSSLEKRPLLTKSLSTGVISSTSNLIEQTLS-----TAAFSLADWAA---------FTLVGAVFIASSLHYWYLFLERVANSKAVTSRVRS-----KWGRVLVQIAVDQSVGASFINSGYFALHTIFLALLTGTVFPLPELGSSIWEKVSSRYVTMIISNAKLWPWVSFFNFSFVPMNLRVLVTNCVAVFWDYLMS 923
NG + G L YL +L+ +P++TK +++GVI +++ Q L+ T +F+L + A + ++GA++IA +HYW+ LE K + + + + L + +DQ++GA IN+G+ L T AL +G E G V + + ++ KLWP + NF+FVP LRVL N V + W+ +S
Sbjct: 76 NGGLVVESGNKNGGDGLLASYLRALDTKPIITKVVTSGVICGIGDIMAQALAFKTAATESFTLGSFLAALEFKRLAIYGVLGALWIAPVVHYWFDALEAATKDKKAVAGAPAPSFAMRMFKALKMVTLDQTIGAPLINAGFMFLFTFATALTSGAGGI--ESGKKAGTMVKNGIWSTMLVCWKLWPIANMINFAFVPAKLRVLFLNFVGLGWNIYLS 290 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig959.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig959.18.1 >prot_P-littoralis_Contig959.18.1 ID=prot_P-littoralis_Contig959.18.1|Name=mRNA_P-littoralis_Contig959.18.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=206bp MVANGAPGEKKSRPGGVSRLWGLYLSSLEKRPLLTKSLSTGVISSTSNLIback to top mRNA from alignment at P-littoralis_Contig959:60892..73724+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig959.18.1 ID=mRNA_P-littoralis_Contig959.18.1|Name=mRNA_P-littoralis_Contig959.18.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=12833bp|location=Sequence derived from alignment at P-littoralis_Contig959:60892..73724+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig959:60892..73724+ >mRNA_P-littoralis_Contig959.18.1 ID=mRNA_P-littoralis_Contig959.18.1|Name=mRNA_P-littoralis_Contig959.18.1|organism=Pylaiella littoralis U1_48|type=CDS|length=618bp|location=Sequence derived from alignment at P-littoralis_Contig959:60892..73724+ (Pylaiella littoralis U1_48)back to top |