mRNA_P-littoralis_Contig958.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig958.5.1
Unique NamemRNA_P-littoralis_Contig958.5.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig958.5.1 vs. uniprot
Match: A0A6H5JVW3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVW3_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 1.290e-28
Identity = 75/131 (57.25%), Postives = 84/131 (64.12%), Query Frame = -2 
Query:    5 AFGXXXXXTPASDQASGHIQDAPDDQPFEVLHVASSSTTNRSHLIPEQGPDLISGTLLMDCDSFTTRVRLHGGPTATSSALTTALLDTGSPASFVSDSVVQNMIAGGALTASCVRHSTSRSWGGFGDGPTL 397
            A G      P  D A   ++ AP D    V  VAS+S       + E GPDL+ GTLL+D +S+TTRV LHGGPTATS     ALLD+GSPASFVSDSVV  MIA GALTA  VR S SR WGGFGDGP L
Sbjct:  268 ATGSSLRKDPGEDPACLRLE-APGDHAPGVHLVASTSACADQPPLLEHGPDLVGGTLLLDSNSYTTRVLLHGGPTATSQLARVALLDSGSPASFVSDSVVTAMIAAGALTAGSVRVSPSRRWGGFGDGPAL 397
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BLAST of mRNA_P-littoralis_Contig958.5.1 vs. uniprot
Match: A0A6H5JFD5_9PHAE (NADAR domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFD5_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 3.760e-28
Identity = 75/131 (57.25%), Postives = 82/131 (62.60%), Query Frame = -2 
Query:    5 AFGXXXXXTPASDQASGHIQDAPDDQPFEVLHVASSSTTNRSHLIPEQGPDLISGTLLMDCDSFTTRVRLHGGPTATSSALTTALLDTGSPASFVSDSVVQNMIAGGALTASCVRHSTSRSWGGFGDGPTL 397
            A G      P  D A   + DAP D    V  VAS+S       + E GPDL+ GTLL+D DS+TTRV LHGGPTATS     ALLD+GSPASFVSDSVV  MIA GALTA  VR    R WGGFGDGP L
Sbjct:  564 ASGSSLRKDPGEDPACLRL-DAPGDHAPGVHLVASTSACADQPPLLEHGPDLVGGTLLLDSDSYTTRVLLHGGPTATSQLARVALLDSGSPASFVSDSVVTAMIAAGALTAGSVRVLPFRRWGGFGDGPAL 693
[Close]
BLAST of mRNA_P-littoralis_Contig958.5.1 vs. uniprot
Match: A0A6H5KUS6_9PHAE (NADAR domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUS6_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 1.350e-27
Identity = 71/127 (55.91%), Postives = 80/127 (62.99%), Query Frame = -2 
Query:   17 AFGXXXXXTPASDQASGHIQDAPDDQPFEVLHVASSSTTNRSHLIPEQGPDLISGTLLMDCDSFTTRVRLHGGPTATSSALTTALLDTGSPASFVSDSVVQNMIAGGALTASCVRHSTSRSWGGFGD 397
            A G      P  D A   + DAP D    V  VAS+S       + E GPDL+ GTLL+D DS+TTRV LHGGPTATS     ALL++GSP SFVSDSVV  MIA G+LTA  VR S SR WGGFGD
Sbjct:  148 ATGSSLRKDPGEDPACLRL-DAPGDHAPGVHLVASTSACADQPPLLEHGPDLVGGTLLLDSDSYTTRVLLHGGPTATSQLARVALLNSGSPVSFVSDSVVTAMIAAGSLTAGSVRVSPSRRWGGFGD 273
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BLAST of mRNA_P-littoralis_Contig958.5.1 vs. uniprot
Match: A0A6H5L323_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L323_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 9.540e-27
Identity = 68/111 (61.26%), Postives = 76/111 (68.47%), Query Frame = -2 
Query:    5 DAPDDQPFEVLHVASSSTTNRSHLIPEQGPDLISGTLLMDCDSFTTRVRLHGGPTATSSALTTALLDTGSPASFVSDSVVQNMIAGGALTASCVRHSTSRSWGGFGDGPTL 337
            DAP D    V  VA++S       + E GPDL+ GTLL+D  S+TTRV LHGGPTATS     ALLD+GSPASFVSDSVV  MI  GALT+  VR S SR WGGFGDGP L
Sbjct:  288 DAPGDHAPGVHLVAATSVCQDHPPLLEHGPDLVGGTLLLDSASYTTRVLLHGGPTATSQLPRVALLDSGSPASFVSDSVVTAMIDAGALTSGSVRVSPSRRWGGFGDGPAL 398
[Close]
BLAST of mRNA_P-littoralis_Contig958.5.1 vs. uniprot
Match: A0A6H5JK47_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK47_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 9.810e-27
Identity = 68/111 (61.26%), Postives = 76/111 (68.47%), Query Frame = -2 
Query:    5 DAPDDQPFEVLHVASSSTTNRSHLIPEQGPDLISGTLLMDCDSFTTRVRLHGGPTATSSALTTALLDTGSPASFVSDSVVQNMIAGGALTASCVRHSTSRSWGGFGDGPTL 337
            DAP D    V  VA++S       + E GPDL+ GTLL+D  S+TTRV LHGGPTATS     ALLD+GSPASFVSDSVV  MI  GALT+  VR S SR WGGFGDGP L
Sbjct:  335 DAPGDHAPGVHLVAATSVCQDHPPLLEHGPDLVGGTLLLDSASYTTRVLLHGGPTATSQLPRVALLDSGSPASFVSDSVVTAMIDAGALTSGSVRVSPSRRWGGFGDGPAL 445
[Close]
BLAST of mRNA_P-littoralis_Contig958.5.1 vs. uniprot
Match: A0A6H5KUS0_9PHAE (NADAR domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUS0_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 4.780e-26
Identity = 67/111 (60.36%), Postives = 75/111 (67.57%), Query Frame = -2 
Query:    5 DAPDDQPFEVLHVASSSTTNRSHLIPEQGPDLISGTLLMDCDSFTTRVRLHGGPTATSSALTTALLDTGSPASFVSDSVVQNMIAGGALTASCVRHSTSRSWGGFGDGPTL 337
            DAP D    V  VA++S       + E GPDL+ GTLL+D  S+TT V LHGGPTATS     ALLD+GSPASFVSDSVV  MI  GALT+  VR S SR WGGFGDGP L
Sbjct:  288 DAPGDHAPGVHLVAATSVCQDHPPLLEHGPDLVGGTLLLDSASYTTWVLLHGGPTATSQLPRVALLDSGSPASFVSDSVVTAMIDAGALTSGSVRVSPSRRWGGFGDGPAL 398
[Close]
BLAST of mRNA_P-littoralis_Contig958.5.1 vs. uniprot
Match: A0A6H5L559_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L559_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 1.060e-23
Identity = 63/99 (63.64%), Postives = 68/99 (68.69%), Query Frame = -2 
Query:    5 VASSSTTNRSHLIPEQGPDLISGTLLMDCDSFTTRVRLHGGPTATSSALTTALLDTGSPASFVSDSVVQNMIAGGALTASCVRHSTSRSWGGFGDGPTL 301
            VAS+S       + + GPDL+  TLL+D DS TTRV LHGGPTATS     ALLD G PASFVSDSVV  MIA GALTA  VR S SR WGGFGDG  L
Sbjct:  147 VASTSGCADQPPLLKHGPDLVGDTLLLDSDSSTTRVLLHGGPTATSQLTRVALLDPGFPASFVSDSVVTTMIAAGALTAGSVRVSPSRRWGGFGDGLAL 245
[Close]
BLAST of mRNA_P-littoralis_Contig958.5.1 vs. uniprot
Match: A0A6H5JSI4_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSI4_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 9.220e-23
Identity = 64/103 (62.14%), Postives = 69/103 (66.99%), Query Frame = -2 
Query:   29 DAPDDQPFEVLHVASSSTTNRSHLIPEQGPDLISGTLLMDCDSFTTRVRLHGGPTATSSALTTALLDTGSPASFVSDSVVQNMIAGGALTASCVRHSTSRSWG 337
            DAP D    V  VAS+S       + E GPDL+SGTLL+D DS TTRV LHGGPTATS     ALLD+GSPASFVSDSVV  MIA GAL    VR S SR WG
Sbjct:  322 DAPGDHAPGVHLVASTSACADQPPLLEHGPDLVSGTLLLDSDSCTTRVLLHGGPTATSQLARVALLDSGSPASFVSDSVVTAMIAAGALKTGSVRVSPSRRWG 424
[Close]
BLAST of mRNA_P-littoralis_Contig958.5.1 vs. uniprot
Match: A0A6H5K8W4_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8W4_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 3.530e-21
Identity = 66/120 (55.00%), Postives = 74/120 (61.67%), Query Frame = -2 
Query:   38 AFGXXXXXTPASDQASGHIQDAPDDQPFEVLHVASSSTTNRSHLIPEQGPDLISGTLLMDCDSFTTRVRLHGGPTATSSALTTALLDTGSPASFVSDSVVQNMIAGGALTASCVRHSTSR 397
            A G      P  D A   + DAP D    V  VAS+S       + E GPDL+ GTLL+D DS+TTRV LHGGPTATS     ALLD+GSP SFVSDSVV  MIA GALTA  V  S+SR
Sbjct:  785 ATGSSLRKDPGEDPACLRL-DAPGDHAPGVHLVASTSACADQPPLLEHGPDLVGGTLLLDSDSYTTRVLLHGGPTATSQLARVALLDSGSPTSFVSDSVVTAMIAAGALTAGSVVPSSSR 903
[Close]
BLAST of mRNA_P-littoralis_Contig958.5.1 vs. uniprot
Match: A0A6H5JDD1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDD1_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 2.580e-20
Identity = 63/111 (56.76%), Postives = 70/111 (63.06%), Query Frame = -2 
Query:   65 AFGXXXXXTPASDQASGHIQDAPDDQPFEVLHVASSSTTNRSHLIPEQGPDLISGTLLMDCDSFTTRVRLHGGPTATSSALTTALLDTGSPASFVSDSVVQNMIAGGALTA 397
            A G      P  D A   + DAP D    V  VAS+S       + E GPDL+ GTLL+D DS+TTRV LHGGPTATS     ALLD+GSPASFVSDSVV  MIA GALTA
Sbjct:  268 ATGSSLRKDPGEDPACLRL-DAPGDHAPGVHLVASTSACADQPPLLEHGPDLVGGTLLLDSDSYTTRVLLHGGPTATSQLARVALLDSGSPASFVSDSVVTAMIAAGALTA 377
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig958.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A6H5JVW3_9PHAE1.290e-2857.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFD5_9PHAE3.760e-2857.25NADAR domain-containing protein (Fragment) n=1 Tax... [more]
A0A6H5KUS6_9PHAE1.350e-2755.91NADAR domain-containing protein (Fragment) n=1 Tax... [more]
A0A6H5L323_9PHAE9.540e-2761.26Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JK47_9PHAE9.810e-2761.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUS0_9PHAE4.780e-2660.36NADAR domain-containing protein (Fragment) n=1 Tax... [more]
A0A6H5L559_9PHAE1.060e-2363.64Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JSI4_9PHAE9.220e-2362.14Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K8W4_9PHAE3.530e-2155.00Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JDD1_9PHAE2.580e-2056.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig958contigP-littoralis_Contig958:13802..14496 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size695
Hectar predicted targeting categoryother localisation
Exons1
Cds size354
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791871.3819416-UTR-P-littoralis_Contig958:13801..141421680791871.3819416-UTR-P-littoralis_Contig958:13801..14142Pylaiella littoralis U1_48UTRP-littoralis_Contig958 13802..14142 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791871.3942313-CDS-P-littoralis_Contig958:14142..144961680791871.3942313-CDS-P-littoralis_Contig958:14142..14496Pylaiella littoralis U1_48CDSP-littoralis_Contig958 14143..14496 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig958.5.1prot_P-littoralis_Contig958.5.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig958 14143..14496 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig958.5.1

>prot_P-littoralis_Contig958.5.1 ID=prot_P-littoralis_Contig958.5.1|Name=mRNA_P-littoralis_Contig958.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=118bp
MCPEAWSEAGVDGAEDPKAGTETGVDAEEDPKSTEVVVDAEEDPISLSEE
GVDGAEDISRETGGWISKMCRRGVFEVDGGAGEMEDEGGCFCNKRRTFIN
VSPSKFLPFHVEGWAALG
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mRNA from alignment at P-littoralis_Contig958:13802..14496+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig958.5.1 ID=mRNA_P-littoralis_Contig958.5.1|Name=mRNA_P-littoralis_Contig958.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=695bp|location=Sequence derived from alignment at P-littoralis_Contig958:13802..14496+ (Pylaiella littoralis U1_48)
TTTCCAAAGTAGGTCCATCACCAAAACCGCCCCAACTACGAGAGGTGGAG
TGTCGGACACAAGAGGCGGTAAGAGCACCGCCCGCGATCATATTTTGGAC
CACGGAGTCGCTCACAAAGGAAGCAGGGGATCCAGTGTCCAAAAGGGCGG
TGGTTAGAGCAGAAGAAGTGGCAGTTGGGCCGCCGTGAAGCCTCACTCGT
GTAGTGAAAGAGTCGCAATCCATCAAAAGGGTACCACTGATGAGGTCGGG
TCCTTGTTCAGGGATGAGATGACTGCGGTTCGTTGTAGACGAGGAAGCGA
CGTGGAGAACTTCGAAAGGTTGATCGTCCGGTGCATCTTGGATGTGTCCA
GAGGCTTGGTCGGAAGCAGGCGTAGACGGCGCAGAAGACCCAAAAGCAGG
AACGGAAACAGGCGTAGATGCAGAAGAAGACCCAAAGTCGACGGAGGTAG
TGGTAGACGCAGAAGAAGACCCAATTTCGTTGTCGGAAGAGGGGGTAGAC
GGCGCAGAAGACATCTCACGAGAAACTGGAGGCTGGATCTCGAAGATGTG
TCGACGGGGGGTGTTCGAAGTAGACGGCGGTGCTGGGGAAATGGAAGATG
AGGGAGGATGTTTCTGCAACAAGCGGCGAACTTTCATCAACGTTTCCCCG
AGCAAATTTTTACCCTTCCATGTAGAAGGATGGGCAGCGTTGGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig958:13802..14496+

>mRNA_P-littoralis_Contig958.5.1 ID=mRNA_P-littoralis_Contig958.5.1|Name=mRNA_P-littoralis_Contig958.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=354bp|location=Sequence derived from alignment at P-littoralis_Contig958:13802..14496+ (Pylaiella littoralis U1_48)
ATGTGTCCAGAGGCTTGGTCGGAAGCAGGCGTAGACGGCGCAGAAGACCC
AAAAGCAGGAACGGAAACAGGCGTAGATGCAGAAGAAGACCCAAAGTCGA
CGGAGGTAGTGGTAGACGCAGAAGAAGACCCAATTTCGTTGTCGGAAGAG
GGGGTAGACGGCGCAGAAGACATCTCACGAGAAACTGGAGGCTGGATCTC
GAAGATGTGTCGACGGGGGGTGTTCGAAGTAGACGGCGGTGCTGGGGAAA
TGGAAGATGAGGGAGGATGTTTCTGCAACAAGCGGCGAACTTTCATCAAC
GTTTCCCCGAGCAAATTTTTACCCTTCCATGTAGAAGGATGGGCAGCGTT
GGGG
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