prot_P-littoralis_Contig957.26.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig957.26.1
Unique Nameprot_P-littoralis_Contig957.26.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length78
Homology
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BLAST of mRNA_P-littoralis_Contig957.26.1 vs. uniprot
Match: A0A6H5KAN7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN7_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 1.240e-13
Identity = 40/75 (53.33%), Postives = 51/75 (68.00%), Query Frame = 0 
Query:    1 MVGHCSHSVCNNDEFKKVQEELEEMCKLLELIRRNDTRWASLHAMLQRVLRLYRALVEYF-NRCGSDRALFPTEW 74
            +VG  SHS  NNDE K +Q   EE   + ELIRRNDTRWAS HAM+ R+L+L +A+VEYF +   ++R L   EW
Sbjct:   84 VVGVFSHSAVNNDELKDIQRLQEEFQIIYELIRRNDTRWASQHAMMVRLLKLKKAIVEYFRDNENNNRKLSSREW 158
[Close]
BLAST of mRNA_P-littoralis_Contig957.26.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 1.280e-13
Identity = 40/75 (53.33%), Postives = 51/75 (68.00%), Query Frame = 0 
Query:    1 MVGHCSHSVCNNDEFKKVQEELEEMCKLLELIRRNDTRWASLHAMLQRVLRLYRALVEYF-NRCGSDRALFPTEW 74
            +VG  SHS  NNDE K +Q   EE   + ELIRRNDTRWAS HAM+ R+L+L +A+VEYF +   ++R L   EW
Sbjct:  412 VVGVFSHSAVNNDELKDIQRLQEEFQIIYELIRRNDTRWASQHAMMVRLLKLKKAIVEYFRDNENNNRKLSSREW 486
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig957.26.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KAN7_9PHAE1.240e-1353.33Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KJ52_9PHAE1.280e-1353.33Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 15..35
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 26..77

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig957contigP-littoralis_Contig957:83954..84548 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig957.26.1mRNA_P-littoralis_Contig957.26.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig957 83954..84548 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig957.26.1 ID=prot_P-littoralis_Contig957.26.1|Name=mRNA_P-littoralis_Contig957.26.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=78bp
MVGHCSHSVCNNDEFKKVQEELEEMCKLLELIRRNDTRWASLHAMLQRVL
RLYRALVEYFNRCGSDRALFPTEWQAVQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_sf