mRNA_P-littoralis_Contig957.2.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig957.2.2
Unique NamemRNA_P-littoralis_Contig957.2.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig957.2.2 vs. uniprot
Match: A0A1X6P5Y5_PORUM (Uncharacterized protein (Fragment) n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P5Y5_PORUM)

HSP 1 Score: 75.5 bits (184), Expect = 1.010e-12
Identity = 54/146 (36.99%), Postives = 72/146 (49.32%), Query Frame = 2 
Query:  284 SKTAGAMDGEDFEETVQRLARTLEEDLPLQYEKPQDLSIFDDGVEFQDPVTSLRGKLLYRGMLFFTLLFFRVACRPGSSYFTVTAIDRPARRTIRTVWETGAATAWNGRELFISGVDTFTVGDDGRISRHDSAWDQ----TWEQVR 709
            ++TAGA      +   +    TL  DLP QY+   D SI+   + F DPVT LRG+L YRGML    L   VA    S+ F V + DR A   +RT+                SGVD F + + GR++RH+S WD+     W  VR
Sbjct:   11 ARTAGA---RPLDAAAEATLTTLLADLPRQYDGDLDWSIYAPDIVFDDPVTLLRGRLSYRGMLLTLRLLAAVATT--SADFEVRSADRVAADVLRTM----------------SGVDYFHLDEGGRVARHESQWDEPPAAVWAAVR 135
[Close]
BLAST of mRNA_P-littoralis_Contig957.2.2 vs. uniprot
Match: A0A2T1E2L4_9CYAN (Uncharacterized protein n=1 Tax=Stenomitos frigidus ULC18 TaxID=2107698 RepID=A0A2T1E2L4_9CYAN)

HSP 1 Score: 70.9 bits (172), Expect = 3.730e-11
Identity = 44/136 (32.35%), Postives = 69/136 (50.74%), Query Frame = 2 
Query:  329 VQRLARTLEEDLPLQYEKPQDLSIFDDGVEFQDPVTSLRGKLLYRGMLFFTLLFFRVACRPGSSYFTVTAID-----RPARRTIRTVWETGAA--TAWNGRELFISGVDTFTVGDDGRISRHDSAWDQTWEQVRQQ 715
            V+R   TL+++LP+ +E+     I+   ++F+DPV   +GKL YR ++F+TL F       G  +FT    D     +P   TIR  W         W  + LF +G   +T+  DG IS H   WD+T  ++ +Q
Sbjct:    3 VERAIATLQQELPMLFERDLSYDIYSQDIDFRDPVNRFKGKLNYR-IIFWTLRFH------GRLFFTELHFDLHNVQQPEPETIRADWTVRGTLRVPWKAK-LFFNGYSIYTLNQDGLISTHVDTWDRTPGEILKQ 130
[Close]
BLAST of mRNA_P-littoralis_Contig957.2.2 vs. uniprot
Match: A0A7S1TE68_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TE68_9RHOD)

HSP 1 Score: 71.2 bits (173), Expect = 7.570e-11
Identity = 50/129 (38.76%), Postives = 61/129 (47.29%), Query Frame = 2 
Query:  338 LARTLEEDLPLQYEKPQDLSIFDDGVEFQDPVTSLRGKLLYRGMLFFTLLFFRVACRPGSSYFTVTAIDRPARRTIRTVWETGAATAWNGRELFISGVDTFTVGDDGRIS------RHDSAWDQTWEQV 706
            +A  L  DLP QY    D SI+ D + F DPVT LRGKL YRGM+    L   VA  P +  F V  I       + T W +   T W G  + ISG D F +    + S      RH S W Q+  QV
Sbjct:   43 VAAVLLHDLPRQYRHDLDWSIYADDITFDDPVTHLRGKLRYRGMIAVLRLLVAVAFVPHTCTFLVQRISWDVSH-VTTDWSSSGQTRW-GSLVNISGTDIFHLTGPNKTSNAYQVRRHQSTWHQSPLQV 169
[Close]
BLAST of mRNA_P-littoralis_Contig957.2.2 vs. uniprot
Match: A0A433NR93_CHLFR (Uncharacterized protein n=2 Tax=Chlorogloeopsis fritschii TaxID=1124 RepID=A0A433NR93_CHLFR)

HSP 1 Score: 66.6 bits (161), Expect = 1.400e-9
Identity = 42/136 (30.88%), Postives = 69/136 (50.74%), Query Frame = 2 
Query:  314 DFEETVQRLARTLEEDLPLQYEKPQDLSIFDDGVEFQDPVTSLRGKLLYRGMLFFTLLFFRVACRPGSSYFTVTAIDRPARRTIRTVWETGAATA--WNGRELFISGVDTFTVGDDGRISRHDSAWDQTWEQVRQQ 715
            D++  V+R+ +TLE+DLP  +EK    +I+   + F+DPV + +GK+ YR ++F+TL F          YF +  + +    TI   W         W  R +F +G  T+ +  DG I  H   WD+   ++ QQ
Sbjct:    2 DYQLQVERVIKTLEQDLPTLFEKDISYNIYTKDIYFRDPVNTFKGKINYR-IIFWTLRF-HARLFFTKIYFDLHDVCQSDEDTILAKWTVRGVLRLPWKAR-IFFNGYSTYKLNKDGLIYEHIDTWDREPGEILQQ 134
[Close]
BLAST of mRNA_P-littoralis_Contig957.2.2 vs. uniprot
Match: A0A1J1LTU6_9CYAN (Uncharacterized protein n=1 Tax=Planktothrix tepida PCC 9214 TaxID=671072 RepID=A0A1J1LTU6_9CYAN)

HSP 1 Score: 63.9 bits (154), Expect = 1.310e-8
Identity = 41/144 (28.47%), Postives = 68/144 (47.22%), Query Frame = 2 
Query:  311 EDFEETVQRLARTLEEDLPLQYEKPQDLSIFDDGVEFQDPVTSLRGKLLYR---------GMLFFTLLFFRVACRPGSSYFTVTAIDRPARRTIRTVWETGAATAWNGRELFISGVDTFTVGDDGRISRHDSAWDQTWEQVRQQ 715
            E++   ++R+  TL +DLP+ +E+     I+   +EF DPV   +GK  YR         G LFFT L+F +     +    +TA +   R T+R  W+          +LF +G  T+ +   G I  H   WD+  + + +Q
Sbjct:   10 EEYNAQIERVITTLNQDLPMLFERDISYDIYTSDIEFIDPVNRFKGKFSYRIIFWTLRFHGRLFFTELYFDLHDVQQTQSDIITA-NWTVRGTLRLPWKP---------QLFFNGYSTYKLTSQGLIYYHQDTWDRPPQAILKQ 143
[Close]
BLAST of mRNA_P-littoralis_Contig957.2.2 vs. uniprot
Match: UPI0018EFF173 (DUF2358 domain-containing protein n=2 Tax=Nostoc sp. FACHB-892 TaxID=2692843 RepID=UPI0018EFF173)

HSP 1 Score: 58.2 bits (139), Expect = 1.260e-6
Identity = 39/132 (29.55%), Postives = 64/132 (48.48%), Query Frame = 2 
Query:  326 TVQRLARTLEEDLPLQYEKPQDLSIFDDGVEFQDPVTSLRGKLLYRGMLFFTLLFFRVACRPGSSYFTVTAIDRPARRTIRTVWETGAA--TAWNGRELFISGVDTFTVGDDGRISRHDSAWDQTWEQVRQQ 715
            +V+R+ +TL+EDLP  ++K     I+ D + F+DPV + + K  YR ++F+TL F          YF V  + + A  TI   W         W   +L  +G  T+ +  D  I  H   WD+   ++ +Q
Sbjct:    8 SVERVIKTLKEDLPTLFKKDISYYIYTDDIYFKDPVNTFKYKFNYR-IIFWTLRF-HARLFFTQIYFDVHEVYQSAEYTILAKWTVRGVLRVPWKA-DLLFNGCSTYKLNQDNFIYEHIDTWDRKPGEILRQ 136
[Close]
BLAST of mRNA_P-littoralis_Contig957.2.2 vs. uniprot
Match: UPI0018EFFD7F (DUF2358 domain-containing protein n=1 Tax=Nostoc flagelliforme TaxID=1306274 RepID=UPI0018EFFD7F)

HSP 1 Score: 57.8 bits (138), Expect = 1.750e-6
Identity = 40/132 (30.30%), Postives = 63/132 (47.73%), Query Frame = 2 
Query:  326 TVQRLARTLEEDLPLQYEKPQDLSIFDDGVEFQDPVTSLRGKLLYRGMLFFTLLFFRVACRPGSSYFTVTAIDRPARRTIRTVWETGAA--TAWNGRELFISGVDTFTVGDDGRISRHDSAWDQTWEQVRQQ 715
            +V+R+ +TL+EDLP  +EK     I+ D + F+DPV + + K  YR ++F+TL F          YF V  +   A  TI   W         W    LF +G  T+ +  +  I  H   WD+   ++ +Q
Sbjct:    8 SVERVIKTLKEDLPTLFEKDISYHIYTDDIYFKDPVNTFKYKFNYR-IIFWTLRF-HARLFFTQIYFDVHEVYHSAEDTILAKWTVRGVLRVPWKAGLLF-NGYSTYKLNQNNLIYEHIDTWDRKPGEILRQ 136
[Close]
BLAST of mRNA_P-littoralis_Contig957.2.2 vs. uniprot
Match: A0A2D0HIB0_9NOSO (Uncharacterized protein n=8 Tax=Nostocales TaxID=1161 RepID=A0A2D0HIB0_9NOSO)

HSP 1 Score: 54.3 bits (129), Expect = 2.740e-5
Identity = 38/136 (27.94%), Postives = 65/136 (47.79%), Query Frame = 2 
Query:  314 DFEETVQRLARTLEEDLPLQYEKPQDLSIFDDGVEFQDPVTSLRGKLLYRGMLFFTLLFFRVACRPGSSYFTVTAIDRPARRTIRTVWETGAA--TAWNGRELFISGVDTFTVGDDGRISRHDSAWDQTWEQVRQQ 715
            +++  V+++ +TL+EDLP  +EK     I+   + F+DPV + + K  YR ++F+TL F          +F V  + + A  TI   W         W    LF +G  T+ +  D  I  H   WD+   ++ +Q
Sbjct:    2 EYQLPVEKVIKTLKEDLPKLFEKDISYHIYTQDIYFKDPVNTFKYKFNYR-IIFWTLRF-HARLFFTQIHFDVHEVYQSAEGTILAKWTVRGVLRVPWKAGLLF-NGYSTYKLNQDNLIYEHIDTWDRKPGEILRQ 134
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig957.2.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A1X6P5Y5_PORUM1.010e-1236.99Uncharacterized protein (Fragment) n=1 Tax=Porphyr... [more]
A0A2T1E2L4_9CYAN3.730e-1132.35Uncharacterized protein n=1 Tax=Stenomitos frigidu... [more]
A0A7S1TE68_9RHOD7.570e-1138.76Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A433NR93_CHLFR1.400e-930.88Uncharacterized protein n=2 Tax=Chlorogloeopsis fr... [more]
A0A1J1LTU6_9CYAN1.310e-828.47Uncharacterized protein n=1 Tax=Planktothrix tepid... [more]
UPI0018EFF1731.260e-629.55DUF2358 domain-containing protein n=2 Tax=Nostoc s... [more]
UPI0018EFFD7F1.750e-630.30DUF2358 domain-containing protein n=1 Tax=Nostoc f... [more]
A0A2D0HIB0_9NOSO2.740e-527.94Uncharacterized protein n=8 Tax=Nostocales TaxID=1... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig957contigP-littoralis_Contig957:5293..17426 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog221288.JH992901_gene4268
PFAMsDUF2358
Model size1345
Max annot lvl1117|Cyanobacteria
Hectar predicted targeting categorysignal peptide
Exons7
Evalue1.31e-11
EggNOG OGs294K5@1|root,2ZRZM@2|Bacteria,1G655@1117|Cyanobacteria,1JKUJ@1189|Stigonemataceae
Ec32 ortholog descriptionProtein of unknown function DUF2358
Ec32 orthologEc-22_002140.1
DescriptionUncharacterized conserved protein (DUF2358)
Cds size675
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig957.2.2prot_P-littoralis_Contig957.2.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig957 5342..16805 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791870.2639985-UTR-P-littoralis_Contig957:5292..53411680791870.2639985-UTR-P-littoralis_Contig957:5292..5341Pylaiella littoralis U1_48UTRP-littoralis_Contig957 5293..5341 +
1680791870.3715184-UTR-P-littoralis_Contig957:16805..174261680791870.3715184-UTR-P-littoralis_Contig957:16805..17426Pylaiella littoralis U1_48UTRP-littoralis_Contig957 16806..17426 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791870.2763276-CDS-P-littoralis_Contig957:5341..54401680791870.2763276-CDS-P-littoralis_Contig957:5341..5440Pylaiella littoralis U1_48CDSP-littoralis_Contig957 5342..5440 +
1680791870.2877796-CDS-P-littoralis_Contig957:7606..76911680791870.2877796-CDS-P-littoralis_Contig957:7606..7691Pylaiella littoralis U1_48CDSP-littoralis_Contig957 7607..7691 +
1680791870.303926-CDS-P-littoralis_Contig957:8048..81491680791870.303926-CDS-P-littoralis_Contig957:8048..8149Pylaiella littoralis U1_48CDSP-littoralis_Contig957 8049..8149 +
1680791870.314733-CDS-P-littoralis_Contig957:8584..87231680791870.314733-CDS-P-littoralis_Contig957:8584..8723Pylaiella littoralis U1_48CDSP-littoralis_Contig957 8585..8723 +
1680791870.3279839-CDS-P-littoralis_Contig957:14765..148381680791870.3279839-CDS-P-littoralis_Contig957:14765..14838Pylaiella littoralis U1_48CDSP-littoralis_Contig957 14766..14838 +
1680791870.346772-CDS-P-littoralis_Contig957:15712..158101680791870.346772-CDS-P-littoralis_Contig957:15712..15810Pylaiella littoralis U1_48CDSP-littoralis_Contig957 15713..15810 +
1680791870.359712-CDS-P-littoralis_Contig957:16725..168051680791870.359712-CDS-P-littoralis_Contig957:16725..16805Pylaiella littoralis U1_48CDSP-littoralis_Contig957 16726..16805 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig957.2.2

>prot_P-littoralis_Contig957.2.2 ID=prot_P-littoralis_Contig957.2.2|Name=mRNA_P-littoralis_Contig957.2.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=225bp
MQVGWFLWTVATVLVLEHAEIEAFATGYSTKLLVAGGRHRHDRVEVPYRS
SSTTLPRQPAAGAAATTGYTRRGARFFLSKTAGAMDGEDFEETVQRLART
LEEDLPLQYEKPQDLSIFDDGVEFQDPVTSLRGKLLYRGMLFFTLLFFRV
ACRPGSSYFTVTAIDRPARRTIRTVWETGAATAWNGRELFISGVDTFTVG
DDGRISRHDSAWDQTWEQVRQQVA*
back to top

mRNA from alignment at P-littoralis_Contig957:5293..17426+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig957.2.2 ID=mRNA_P-littoralis_Contig957.2.2|Name=mRNA_P-littoralis_Contig957.2.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=12134bp|location=Sequence derived from alignment at P-littoralis_Contig957:5293..17426+ (Pylaiella littoralis U1_48)
CCATTTGCTTGCGTTGTAAGCCTTTTGCCAGAGGGGACACACACACAGCA
TGCAGGTCGGTTGGTTTCTTTGGACGGTGGCTACCGTGCTGGTGCTGGAA
CATGCGGAAATTGAGGCCTTTGCGACAGGGTATTCCACAAAGCTTTTGGT
ATGTTTCCGCTTGTTTCTTCATAAATACGATACGTACTGTCGTCTCGTTC
GTCGCATCTCCGTCTGTTTTTGGGGAGCAGGTGAATCTGGATCGCTAGAG
GGCCTATGAAATCATACTTCGAAGTATAATGTGAAGCTACATCACTGTAA
CAATTACAACGAATACGCCGACCAGCAGCAGCACACCTGGTGGGCCTATG
ATAGAAGCGATGCAGTACTGTAGTAGAACAGCCATATCTTGCAGTTCTCC
AGCGAAATCGCCCCGCCCGCATTTCCGTCAAGAATGTTTGTGATAAAAAT
ATTATAAATTTTAATTTTAACAGGGTACTCGTCGGGAATATTCCCGACGT
CATTTAGGCGGGAATTTGGGCGGTCCCGGTACTGGCGGGAAGTACCGCCA
AAATTCGCGGTACCGGGAACCGCCAAAATTGGTACCGCCAAAAAAACGAA
AACCGCTTCCCGCCTAAAAATTCCCGCCGTATTGCAGTACCGCCAAAAAA
ATACCGGCGAAATCTCGCGTTCCCGGGACCGCCTAAAAAAAACCGGCATA
TTGCAGTACCGCCAAAAAAGTACCGGCATATTGCAGTACCGCCAAAATGG
TACCGGCATATTGCAGTACCGCCAAAATGGTACCGGCATATTGCAGTACC
GCCAAAATGGTACCGGCATAGTGCAGTACCGCCTAAATGGTACCGCCGTA
CGCTAATTCCGCCTGGGGTTATGTACCACTAGGGCTTTCCAAACGTATAC
AGCAGTACAGTATACACCCAATGGACTAGAGTTCGATCCTCACACCGCCT
GTTTTTTTTTCTGTCTTCTTTTCTCTTTTCTTTTCCAGCCTTTTTTCTTT
TTTCTTTTTTCTTTTTTTTTTCTTCGCGTTGGTTCTATATATCGCTAGTG
CCTTTTGGGCGGAACCTCTGTCTGCATGTGCAGACAGGCGCGGCGTGCGG
CGTGCGCCACACGCCACACCTGCCCAGCACGCAGAGTGCGCGTGGTCTGT
CTAGCAATGAGCGCTTCAGACCCTAGTGTTAGTGCTCGTTCAGCCGCCAC
AAAAATGTGCATATATACATATATACAAGTATACAATATACAACAATAGC
AGGATATAGTGCAAATATAGACGTAAGGGCCGAAAGTACGAAAGTACCGC
CATTTCCGGCGACGGCGTGGTAAGCTTACCCAGTACCGCCGAATTTCGTA
AAACCGGGAACCGCCGGAGGCAGTACCGCCACATTGTAAACCGCCGAAGG
CGGTCCCGCCATACTGCGAACCGCCGACGAGAGTACCGCCAAAAAATGCG
GTACCGGGAACCGCCGAAGGCGTTCCCGCCAAACTGCGAACCGCCGACGA
GAGTACCGCCAAAAAATGCGGTACCGGGAACCGCCAAAAGTGGTCCCGCC
AAAAAAACGAAAACCGCTTCCCGCCTAAAAATTCCCGCCGTATTGCAGTA
CCGCCAAAATTGGTACCGCCAAAAAAATCGGTACCGACGAGTACCCTGAA
AAATAATACTACGGAGTACTCCGGAGTAAGGCTACTTATTATGTGTCATT
TTCGCCAGATTATTTTTGATCAATAATGATCTAGGTGTCACATCCGGCTT
CTTATGTGTCATTTTTGCGCCTTTTTCGATCGAAAAAAAAATGATCTGGG
TTTCTGATCGCCCGAGTTGATCAGAAAACTTGGAAAAAATGATCTGGACA
GATCATTTTTTTGTTCATCATTTTTGCTATTTTTGAATTTGTGCCGCATA
TATGATATGCCAACGGACGACACCAAGACGCACATCCCACAGACTCACAT
CCCCACAAAAGCGCTATGCCAGCTCGGCTGCCATCACTGCTGCTCCTACT
GCTACTTGTGGTGGGTGGTCAGCGTGTTGCTTCATCGTCGTCTGTTGCTT
CACGGTGAACAATTTCTTGTTCTCTAGCGCGAGGTTGATCGACGTCTTGA
CGTAATCATTATATACCAGGGGGGTAGTACTTCGTCTACGTTGATGTCCA
TGGCTGTGGTGCGCCGTGCTGCTCGGGTTGCTCTGTGTGCCGTCTGCTGA
ATCGCTGTTGACGCGTTTGAGCATTGTAGCGGAACCGTCCGTGGACAGTC
TCGTTTCGCGCGCGGATAACAGACAATAAAATTTCACGTTAAATTTCCGT
GCGGAACACAACAGGTGGCGGGAGGACGTCATCGTCATGATCGGGTCGAG
GTGCCCTACCGTTCGTCGAGCACGACGCTTCCAAGACAACCAGCAGCCGG
TAACAATTTCAACAGGATATCCTGCGTGAACCCTAACGCTTCCAATACAA
GCAGCAGCGGGAAACAGCAGTTTCAACAGGCATAGTACCACTTCCCGAAA
GAGGGTATCCTGCATGTTGAGATGTTTGCACTGGCTGGCAGCCACGCCAG
GTGTTCCTCCGACCCCCCCCCGATGTGCAATCAACTATATTTTGTCCATC
ATTTGCGTCCAGTAGTTAACGTTGACTCCAAGCATTCTAGAAGGTATCAT
ACACGCGAAATTGCGCTTCACTCTCTGGGCGTGGTGCATGTGCCCCAACC
TTGAGCGAATTGCACTATTCATCCGATTCTCGTGCTTCCGGTGGTTGGGG
ACGCAGGAGCAGCGGCAACAACGGGGTACACAAGAAGAGGCGCTCGTTTT
TTCCTGTCCAAGACCGCTGGCGCTATGGACGGCGAAGACTTCGAAGAAAC
AGTGCAGGCAAGACGCCAGGGACTCGAAAGAGAGACCAGGCTGCAAACAG
TAGTCCACAGCAGTCGGTCGTTTTTTCAGCGGCTTCCCTCCCGGATCTCT
CTTGCTCTACGTGGGCGTGACACGGTGTGTACAGCAGTGGCTCTTAGCCC
TACAGCTCATACACGTGGTGGTGCTATCATACCACAGCAGTACTGCCGGG
GTCTATCATATCTGTGTGCACATCGTGAATGAACGGCGGTATTTTCGGGC
CGGGCCTGACCGTTCCCAATGGATTGACACGACTGCTGTCATATCGGGAT
GTTAGGGCCCACCCGGCCGCAATCAAACGTGGCACACCGACTCCGCGCGA
CCCGCCTCGTTGCAAGCCATGCACCCGATACCTCGCATGACGACACCCGC
CCTGCTGCTATCCCACGGCTGGCTGGCTCTCTCTGGCTGCAGAGATTGGC
TCGCACTCTGGAGGAAGACCTGCCGTTGCAGTACGAAAAACCTCAAGACT
TGTCCATTTTTGATGACGGCGTCGAGTTTCAAGATCCAGTTACAAGTCTC
CGCGGTAAACTACTCTATCGAGGAATGCTCTGTGAGTGAATGCACGTAAA
TTTTGAGTCGACTTATTTTCAAACCCTGCTTGTTCGAGAGACTGAAGCCG
TTACACACTACGCGACCGTCTTTGGTTTCTCGGTAAATATGCCGAAACAT
CGACGACGCAGTGTGAGCTGCACTACTCGAGGCCCCGCATCCACGCTCCT
GAGGGACACTTCTTTGAATGATGCATAGGGCAAACAGGCGTAGTAGTAAA
TTAGAAAGAGGGAGCATCTTTGGCCAAGCTGCTCTTGTTGTTGAGATGTC
CCTAACACGAGAAACACCAGTGCAGTACACAAATCTATAACCGTATCACC
GTCCAAACAAGGCACCTCCCCCCCCCCGTTCCAATACAGTATTGTAGTAC
CGTGTTTCCCCCCCCTCCAAATAACGCAATCCTCTCCCTCTCCCAAACCT
CCCCAAATACTGTTTTTTCTTCCGCCTCCGCAAATATCGTATACCCCCGC
CCGAGCGCCGTATTTTCGCTCCTCCATCCACTTATCCTCGCGCCCCCGCA
AATGCCGCACCCTCCCCTTAATACCGTACTTCAGCTCCCCTCAATACCGT
ACGTCCTCTCCCCCTTGCAAACGCCGTATCATACCCCTTCTccccccCCC
CCCTTCAAATGCCGTATTTACCCTACCGTCTCCAAATAATACCGTGCCCC
CCTCGCTTCATAAACAAACAGTACCGCGCCCTCCCAACAAGTGCCAATCT
TGCAGTGTGTCTTCGACGTCGAAAATATGCTAAAAAGCAAAAGCCGCAGG
CTGTTTTTTCCCCGAAGCCGATCCGCTGTTATTCCCGGAAAGGTTTAATC
TCCGTTGCTGCATCCAGCGTCTGGCGGTTGGCGTTTCTCTCGCCTCGCGG
CCAGACGGATCCTGCTCATCATTCTTAAGCGATAGCTTCAGTCTCATAAT
CTTAAATTCGAAAAGTGTGGACCCCCCACAGAAGCTCCGGCCCACGCGTT
TTCCCCCCAGAAACGCCGTTCTCGACAATGCAGCTGCAGCTTGACCTGAA
ATCTTGAGAGTCTGCCCATCAGGACGCCTTTGACTAGCATACCGAATTTC
GTACGGTTCTGTGGCGCCGGTGTAGAGCATCGGGTGTGGGGTGCACTGCA
TGCATCCATCATATCCCACCCCACAATCTCGGTTAATCGGAATTGGCGGC
ATCTCTTGGTTATGTTTGTCCGCCATTGTTGAAAGAAGCTTTTTCGGCAC
TATTTTCCTATGTTGCTGCTCGTACGTAGTCAAGCCGACAGGCACCCCCT
GATCGATCGATGCTCAAAAAAAGCTAAACGTCAGCCTACAGCACAGATCT
CCCGAGTCTTGGTGCATCCCTGTGTATAGCCAGTACGATTCGGGAGCTCT
CCGCGTCTTTCTATCAGCTACGCCCACCCGTGGTACACGCAAATCGATTT
CGTCGCCACCGGCTTTGGCGGCCCGGTCAACCTGTTCGGGAGGGTCCCTC
GAAACGCCTCCGGGTCCGACATCACGAAAATACAGAATACAGCACAACAA
CAGCACAACAATACCACACAGCAGCGATTCGATGTCATGGTCGCGAGGAA
CCTGTGCCTGGTCAAGCTCGCTAACGCCTGCTGGCTTTGCATATGCAGCT
TTGGTGAAGATGTGTCGTGGTACCTGTGTTTGTGTCTGCACCTATACCCT
AGGGTGGTTTGACGGGGGTGGGAAATAATTTTTGCATTTTTTTCTCCGGG
TGTCGGGACGGGAGATCACAGCAGACAAGAGCGACAGGCCGGCGCCTCGT
GCTGTTGGCGGCTCCACCCGGCTAGGGGTTGCCAAGCAGACAGACAGCCA
CCACGCTGTGGCTCGCATATAAAGTGCTGCGTTGGCGGAGATGAGTCACG
GGTGTGATCTGTGTATCGGCACGTCTGGCGAGAAGGCGGGACAACCTCGA
GATCCATGAGCTGGGATCGATTGCACGACAGGCATCGCCAGACACCATGA
CATCGGTTGCAGACACAATGTGAGAGTAGGCGTCGGTCGCTGACTCGGTA
GTGCGCACATCGTTCGGTGATACGTGTGGATGTATGGTTGTTTGTTGTAT
GGTTTCATGGTTGCAGCATTTGAGTACCGGTTTCGTTCGACTGCTGTACT
GCTACTGCTGCTTCTCCCTCTCTACTGGTACAGAGTTGTGGTTGATGTCT
CATGCTGCGTTGTCTACTTTTTTTGGACGAACACATCAATATGTTCGCTT
CTCTCTAGACGAGGACCTAGGGCATTGGCAACGAACACAAATGAACAAAT
TATTCTCTACTCGTATACTGTGTACCTGTCGTGTTGTTTCTATACTCATC
AGGTACTGTACAAATGCAGCTCCCCTGAGGTTATCAGGCTCAATAAGACA
ATTTGGGGGTCGTCTGCGGTATTGTTGGTCTGTAGTGTGTCTATTTGTTT
TTACGTGTAACGGCTATGTTGTGAGTGCAGCAGTACCTCGGTGACGATAG
CGTCAACATATATTTGATATGTTTAACCCCCGCCCACGATGAGATAGCCC
AAATCTGATATCTCTGTTGCGTAGTTTTAGTTATGTCGTGGATCCCACTG
CTGTGTTGCTGCGTTTTGTGCTCGGGATATTCCAGAATATTCGGCCTATT
TGGGCAGTTTGATGTGTATGATACGAAGCACGAGTACGTTCGACCGAATC
GCACAGCGTTCGTTGATGCGTATGGATGCATTTTTATAGCACAGCATTGT
AGTGCTGGTTTCGTTGTACTGCTGTGCTGCTGCTGCTGCTGCTGCTTCTG
TACTGTGTTGTCTGTACCCCTGGTCTATAGCGTGTCTCTCTTTTTTCATG
TGTAACGGCTGGGTTGTGTGTTGTATTGTAAAACACCTCGGTGACGATCG
CGTCAACTTTTTCTCAACCCCGTCCAAGTTCAGATGATAAATACCAACCG
CGACACAAGTAATGTCCGTCATCTACTGTTGTGTATGTTATGGATCTCAC
AAGGTGTTGCTATGTTCTGTGCTTGGAACATTCGGCCTATTGTGTGTATG
ATACAAAGGACAAGTAGTACGTTCGACTGAATCGTTTTTGCACCACCTCC
GTCTACCGCACGAATAATGCGAGAGAGGGATCGAATGGCATCCAGGTCCT
ATGATATGAAAACAATGTTTTCAGGGTGAGCTTGCAGAGACCCAAACTTG
TAACCGTTGTGGCCGTCTTCTGAAACACGTCGTGCTTTTTATCTGCAGCA
CACATCGTTTTATGGAGTCGTCCGGGCAGTATGGCACACAGCTGATCAAC
TACACATCGCCTTCCCTTTTCCCCCATCGACTTCCTGCCTCTCCCCTTCG
CAAATGTCAAACACCGTAGCCACGCGGGGAGATTTTCAAGACGAGGTGGA
GCATATCCCCAGGGTGCTGCCTCGCCTCACCAGGGGTCGAGCGACGTGAT
GGATCGCTTCGAGTGTGCTGGCAATGCGTTCAAGATCCCCGGCGTAAAGG
GATGGGGAATGAGGTGAGGCAGGTGTGCTGTGACTAGCTTACCTTCCAGA
CCTGCTGCCCTTAGTCGCTTACATGTATAGGACATTCAGCGTTCGTTTGA
TGTATGGTCGTGCGCCGATAGTTTGTTGTCGAAAACAGACGGAGTGATGT
ATGTGAGTATTTTTGGCTGGTTGTAAGCAATCATTTCCACGACAAAGAGC
ACCTCACATTTACGCTCCGTCTGAGCGTCAATGCAAAAGAATTGCACCGA
GAGGCGGGCGTGTGTCAGAACTGTTGTCAGTATTCCATGGGAGAAAACAA
TGCCTCTCCGTTGTTACGGTTGTCGGTGGCTACACATCACGGTCGTGTGT
CTTTGCTTGTTCTCTGAGACAGATGGGAGACGTACGTGACTATTTTTTAG
CGCGTGAAGCAGTCGTCTGAACGAAGGAGCGTCTCCCAATTGTACCAGTT
GGGGTGTGGAAAGCAGGATATAGGTATCGTTAGAAGGACGTGTATGCGAA
CTGCCGCGGTTTGACATCGCAGAAATAATGGCCTCACTTTGAGTTCTAAG
CTGTTTCTAGCCACGCGTCACTCCCATTTGTGTATTGTATATTGCGCTGC
TGCTCCCGTCTGTGGTGAGGGTTTGCTCATGTCGGTTGATAATTGGATAC
GTGACTCCCTGGCGTGTCCTTGTTTGATACCATTCTATCTTTGATTTGTG
CTCACTGCACGCACTTACATACTGGGACTATATTCTGTTAAAAAAACAAC
TTGATCTAGGTGCAGAAGTATCCTCATGGCTTCTCTTAACTTTTTGCCCT
TGCCCCTTCTTTCCCCTACCACAAATCAGCTGCAACGCCTGCAGCTGCAG
CATCTCCGTGTGAGCGGACGAACCGACGGCGGACGAGAACAACAAGAGGA
AGTTCACGAAGGCATTCCGGTGCTTCTTCACTCGTGGGACGACCAACAGG
CGACGGTTTACCTACACGCTAATGGCGAACAGTGCGGTACTCGCAAGAGG
CCGCAGGACGACAAGGACGACTGCGCCGAGTGTCAGAACAGCGCCCCGGA
CGTTGTCATTTTCGACACCATGGGTGCCGTAAAGGCTGACCATATGTTTT
GAGTTGGCTGCCTGTACCAGAAGCGGACCGATATGTTGGGAGAAGTCCAA
GAGGAGTTGAAGCAGGCCCGCATCGACTTCGCCGCTTGATGCGGGCCTGC
TCCAGTTACTCTTGGACGTCTCGTCGACGTTGCCTGAGCTTCCTTACAGG
CCCTTCAGCCCCTTTGCGACTTTGACCATACCGGACAGCTTTCAGTATCC
CGTGAGTCCTTCCGGTAGACCAGGTTGACGGAATTCGGCTTCACAGCAGT
GTTTTCTTTGTTTGTCGCCGTGAGGTTCTGCGTGCCTACTTTTTATTTTA
TTTACGTTGACAGTCAACCGCCTCTGTATTGAGTCTCAGTGTTTCCTGCT
GCAATACAATTCACGGGTTCTTTGTTATGCTGACGCCTTCACCACTTACT
TTCTGCCGCACATTCTTGTGCGTGTCTTTATGATGTTTCGAACCTTGACC
TTTCATGGCTGCATGCATGCACGTCCATCTTGTGCTTAGGTTATGGCCGT
TTCGGCAGCAAGCCAAAAACACAAGCAGCTCGGGACTAGCAACGCCGACT
ATAGTCGTCGGATTTAGTTTACACATTTACAATCTATCCTCGTAGCTCTC
ATTTTACCTCTCTCTCGGTTTCAAAGGAGGTTGGTTGGTACAGTGTTCAG
AATATTACCTTCTGCTCGTACTGCCTGCACCAACTTCCGAAACACCTTGA
CAACCCGGACACACACACGTGAAACACCTAATATAAAAACTCGCTCAAGA
CAGGCAACGCCGACGAAACTCGTCGCGATGGTATTAAGGCGGGGTGGTGG
TTGTTGAAAATAAGTTACGACGTGCCGTCTACTTATTTTTTCCCGGCGGA
AGGCTGAACACACGCGCCTTGATTCGGGTGTGCCGCAATACGTCGTCGCC
CCCCCTCCCAACCCCCATCCCCCCGATTTAGCTTCATTTTGCAACGTCGT
GACTGCGCGCATAGTTCGGGGCGGAATTCGGCTTGCTGGAGTGTGCCGCT
GCGACACGTCTGGTGAACGCCAGGGGTTAAGACATACTGGTAGACGGTAG
CTCGGGGGGAAGTTATTTGAACAAATACACCGGCGCATTTTACACAAGTG
CAGTATCCACCTGCCGTGACCCTACAATTCTTCACCCCCTATAGTGTAGA
CTTTATGCAAGTGCATGCCTTGTGAGCTGCTTCGAAACACTTTTTGTTGT
ACACACCTTCGCCATCCCCACCCAACGATAAGTTTCAGTTACAAGCCCAA
CTCAACCTTACCATCTCGGCCGGAGGGGGGGGCACGGAATCGTTGGTATT
CAACACGTCCCTGGGCGATGCACTCTGAAACTACCGTCCGGCCCCCGCCC
CCGCCCCCGCCCCCGCCCCTGCCTCCGCCTCCGCCTGTGCTGTCTTTCTT
TGTGCTGTGGTGCTGCATGTGTGTGTGTGTGGTGTGTGTCTGTGTGTGTG
CGCGCGCGTTTATTCGCTGGCAGTCTTTACTCTGTTGTTCTTCCGCGTTG
CCTGCAGACCGGGTTCGTCTTACTTCACCGTGACTGCGATAGACCGGTGC
GTCGTTTTTTTTTAACTAGTCGGGTCTTTTGGATCATCCATCAAGGTCAC
ACACAAACTTGTTGTCTCTGAACTGGTTGGGTCTTTTTGGATCATCCACT
CGCAAAGGCCGTAAATTTGTCGTTTTTAGTGTGGTGATGTGCTGGAAGGA
AGTCCAACCTTGCCGCCAATATAAACTGCAAAACAAAACACTCACGCGCG
GCTATGTGCCTTTGGCGGTCCAGCTGGTATTGCTGAAAACCTGCGGGTCG
CACCGCTTCGTTAACGGCGAATCCTTTTTCAACCAATCGTCCCTAGCCTT
TTCGTAGACGAGCTGCTTGGAACCCTGAATCTTGTTGTAGCTTCTCGGGA
TAATTGGATCTTTGATGTGGGACTGCTTCTAAGCAGAAGTTCGGGGGGTT
GGGGGGGTACAGTATCAGTTATCGATAAACCACCGCTCATTTATCGTGGG
CCAGAATTGAAACGGAAGGCCCACTTATCCCGTAGCATATTGATTGATTT
TAAGATTATTCTTGCCCCGTACTCGACAATCAGGTGCACTCCCGAAAACT
ATTTTTTTGCTCACCGTCACGATGCGCCCACCCCCCCGATATGCCGGCGG
CTTCATGTCGACTGCCGAGGCCCATGCTGTACGTGACGTCGTTGTGGGGA
GGTACCGTTCGTTGTGTGTTGATTTTAACCGCTGCCGCCGAGTCCATTCG
CGACGTGAACGGGTACTTTTGAGCTTGAGTAGTACTGCTACTGCTGCTGT
CGAATGCAAGCACTAGCACTTAATATTTGCTAGGTTTCCCCTGCCCCCTC
TACGGCCTTTCTCCCCCCTCCCACCGAATACGTCCACCGTCTGGGGGGTG
TCTTCGCGGCAAACAAAAAGACCAGCAAGGCGGACAATCCGCACCGTCTG
GGAAACGGGAGCGGCGACGGCATGGAATGGGAGAGAGCTGTTCATCTCCG
GCGTCGACACGTTCACAGGTGTTTGGATTTTTGTACGTTTTCCTGCTTCG
AAAATTCAGCTGCGCTTGCGTGCCATGCCACCCCCGAAACACTCACCCTA
CACGGGTGGGTGTAGTTGATTGAACAAGAGATGCAAGATTTTGGCGGTGA
GAAAGGTGAAGATCTCGGGTCCTGGCTGCTTTCCGGCGAGCCAACAAAAT
TGTAACGGTCGGTGTAAAAAAGAATCGCGTAAGCAGTCGGGATCAAGATC
GAAAGATTAGTAGTATCGTCTTGCTTTTGGTGGTGATGGTGTTGTTGGTG
GTGGTGCTTTTGCTGTTCCCTTGACACGGACATAACGCTCTCTAAAGCCT
CACGCGTACGAAACACTTTCTGCAGCACGAGTCGACGTCGGTTCGAGGCC
TGATTGCACAAAAAGCAGACACGCTCCTCTCGCCCACTTTGTTTCGGTGC
ACGGGAACAAAACCTGTTGCACACCAACCTCATTTTTCCAAAAGCCGCCG
GTCGGCCACGTCTTGCCTTACGGGGGGGGTCCTTTGCCATGTTGGGTCTA
CAATACTCGCCTCCACATCAGATCGTACATACGGTCCAGACGGAAAAAAA
AGTTGATCCGATGATTCGATTCGCCTTTAGCACAGCTTTCCAACGACATC
TATATGATATCATATGGAATATGAAAACTTGTAAAATATTAATATGTGCC
GTCACCCCTTTGGGAGGAAAAAACTCCACGTGCGGAGTTTATACTATAGG
TGGCACAGCTATGTCTCGAATTTTTAGCAGTTACAATATCATACCGTGCC
TGCAAGTTGAAAGCCTGTTGATTTTTTCTTTCGTTCTTCCTTCCTGCCTA
TCTTCCTCCCTTCCTTCTCGCCCCGCCGTCTGTAATTTACTGTTATTGTC
GGACCCAATGTACTTTACAAACGAACGAAACAGTTGGTGACGACGGTCGG
ATATCGCGGCACGACAGCGCCTGGGATCAGACGTGGGAGCAAGTGCGACA
GCAGGTCGCCTAAGCAAGCAAGGGAGCTTTGCTACCAAGATCTCATCCAG
CGCGTCTTGCGTGTGTACTCTGTACCAGCACGCGGTACAAAAGAAGATAC
CGGAAGCACGCTAGTATGTATGTACCTGAATGATACTCGTGACGTGTTTT
TCTGGTCGTTCTGTTTCGTCCAAAGCACATTGGCGGGGGGGAGAGGGGGT
CTTGCCGCTGATAGAACTGCAGCGTGCTTGAAGCTTTCAGAATAACTCGG
TGACTGAGAGAGAGAGACAATACAGCGGTGATCTGATCACTTTCGAGAGG
GACGTATGTGCATGCTGGAGTCGGGGCGCGAGTTGCAGGTACTTGAGTGC
GGGACTCGCAAACCTGACATAGGACAATTTGTTGCTATTTTATTTTGGTA
TACAACACAGCAGTATCCCCGAGCAGTTGAAGGGCGATGGCGGTGCTGCT
ACTGCTATAGGTGCGTCCGCCTAGACTGTAAAACTAGATGGACAGCACAG
CTGCTGCTGTGCCGAACACAAAAAACATTCGGGCAAAAGAGGCTACTGGG
CGTACACAAAATACAACAAGAACGAAAATAGGAGTATGTGAGACGCTACG
GCCACTGTTGACACCGGATGAAAAACAAAGACGG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig957:5293..17426+

>mRNA_P-littoralis_Contig957.2.2 ID=mRNA_P-littoralis_Contig957.2.2|Name=mRNA_P-littoralis_Contig957.2.2|organism=Pylaiella littoralis U1_48|type=CDS|length=675bp|location=Sequence derived from alignment at P-littoralis_Contig957:5293..17426+ (Pylaiella littoralis U1_48)
ATGCAGGTCGGTTGGTTTCTTTGGACGGTGGCTACCGTGCTGGTGCTGGA
ACATGCGGAAATTGAGGCCTTTGCGACAGGGTATTCCACAAAGCTTTTGG
TGGCGGGAGGACGTCATCGTCATGATCGGGTCGAGGTGCCCTACCGTTCG
TCGAGCACGACGCTTCCAAGACAACCAGCAGCCGGAGCAGCGGCAACAAC
GGGGTACACAAGAAGAGGCGCTCGTTTTTTCCTGTCCAAGACCGCTGGCG
CTATGGACGGCGAAGACTTCGAAGAAACAGTGCAGAGATTGGCTCGCACT
CTGGAGGAAGACCTGCCGTTGCAGTACGAAAAACCTCAAGACTTGTCCAT
TTTTGATGACGGCGTCGAGTTTCAAGATCCAGTTACAAGTCTCCGCGGTA
AACTACTCTATCGAGGAATGCTCTTCTTTACTCTGTTGTTCTTCCGCGTT
GCCTGCAGACCGGGTTCGTCTTACTTCACCGTGACTGCGATAGACCGACC
AGCAAGGCGGACAATCCGCACCGTCTGGGAAACGGGAGCGGCGACGGCAT
GGAATGGGAGAGAGCTGTTCATCTCCGGCGTCGACACGTTCACAGTTGGT
GACGACGGTCGGATATCGCGGCACGACAGCGCCTGGGATCAGACGTGGGA
GCAAGTGCGACAGCAGGTCGCCTAA
back to top