mRNA_P-littoralis_Contig95.78.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig95.78.1
Unique NamemRNA_P-littoralis_Contig95.78.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig95.78.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig95contigP-littoralis_Contig95:301723..303687 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size621
Hectar predicted targeting categoryother localisation
Exons2
Cds size393
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791860.7925525-UTR-P-littoralis_Contig95:301722..3018421680791860.7925525-UTR-P-littoralis_Contig95:301722..301842Pylaiella littoralis U1_48UTRP-littoralis_Contig95 301723..301842 -
1680791860.83308-UTR-P-littoralis_Contig95:303579..3036871680791860.83308-UTR-P-littoralis_Contig95:303579..303687Pylaiella littoralis U1_48UTRP-littoralis_Contig95 303580..303687 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791860.8047857-CDS-P-littoralis_Contig95:301842..3020841680791860.8047857-CDS-P-littoralis_Contig95:301842..302084Pylaiella littoralis U1_48CDSP-littoralis_Contig95 301843..302084 -
1680791860.8166337-CDS-P-littoralis_Contig95:303428..3035791680791860.8166337-CDS-P-littoralis_Contig95:303428..303579Pylaiella littoralis U1_48CDSP-littoralis_Contig95 303429..303579 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig95.78.1prot_P-littoralis_Contig95.78.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig95 301843..303579 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig95.78.1

>prot_P-littoralis_Contig95.78.1 ID=prot_P-littoralis_Contig95.78.1|Name=mRNA_P-littoralis_Contig95.78.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=131bp
MLAPRCCPLPSRSHATKDATTATPTSDLPAVRATISTSETLCQGRVLFFH
GRGEESEEDNYCMSMQDSDDEEETDEAAVQYMRGAFEDVPVRMAVHIVAC
PHISDIMQPMFPFGVTSHSQTGTSCFTCVS*
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mRNA from alignment at P-littoralis_Contig95:301723..303687-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig95.78.1 ID=mRNA_P-littoralis_Contig95.78.1|Name=mRNA_P-littoralis_Contig95.78.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1965bp|location=Sequence derived from alignment at P-littoralis_Contig95:301723..303687- (Pylaiella littoralis U1_48)
CAGCAGAACAGCGCCCCTTCTAAAAACAGTATTGGGCAGCGGGGTGTCGC
CAAGCGATGTGCAACCTGGGTTTCGTAGTACTTTTTCGCGTTCTAGGATG
TCGGGGACATGTTGGCCCCCCGCTGCTGCCCACTTCCATCACGCTCGCAC
GCGACCAAGGACGCGACGACCGCGACGCCAACTTCTGATCTACCTGCTGT
ACGCGCTACCATCAGTACGAGTGAGACTCTGTGCCAGGGCAGAGTTTTGT
TTTTTCACGGTGAGTCTTGTTGTCATGACCGTCCTCAGGGCAGCACCCCG
GGGTAGTTCCCTACCGAATTCCGACTACCCTCGACGTCGCAGGCACTAGC
GTCTCGCCCACCAAGGAGGTTAGTCTCATACACCCGGTGCCGTCAGTACA
TGTCTCAGGCTCTCTTGGATAGAAGTCCGTTTGGAAATCGGACTTGTGTA
GGCAGACTTCTCTCCAAAATGCGGACAAGAATCTCACCGTGTCGAGAGGA
CCCTGAGCGTTCGCCAGAAGCAGGTTGAAAAACAATCGATAACGAAGTAC
TGCTGTAGAGGAGAAAAATCAACGCATGGCGTGGAATCAACCCTCCACCA
CCACCGCCCACCGCGCGCTACGCGAGAGAACGCCTAGTTTCTGCGGGTGA
ACAGAACAAACTTAGGGTTGCAGAAGATTTCTCGGGTTCAACCTTGGTGC
TGTGTTGTGTATCGGAGACAACTATTTTTTGTAGTAAAACCGGACTCCAA
TTTCGCCGCCGCAGCTACCGTCGCTGCTTCTCAGTGCTGCTGGCCGTGTT
CCCTATCTATCTATGCTTTGGCGGCTGCCTTCCTCTTCACGTTGGAATTA
ACATAGACTAGTTGTTCGACCACTAGTACGAAAAAGAAGGGCAGACTCAT
CCCGCCTTCACACGAATAAATTTGTTGCTGACTGTTTCCCCACAGAGGTG
CGGCATGGAAGTAACTGCGCTGCGGGACGCACTCGGACAACATGACGAAG
AACATGACAGCGGTGTATCTCCTTCCCCAACCCGTATGGTTAGGTTGTTC
GGGGTAAGGTTTTGTCTTGAAAATGTGGGTGTAAAAATTATTGAGTTGCA
GTCCCCGAGACAATGCTATGTAAGCCAAGGCATGGCCCAACTTGGCGGCC
TGACTTTTCGCGTGGTCTCGCTGCACCCCACCTCTCGCCACCTCTCGCTG
CCCAGCAGCTTTATTTTTTGGCCATCGATACCCTTGATCATTACTGCCAT
TGCGCCGTTCTGAACACTTTTTGCCTGATGTCTCGCACACTTGATGGCAG
GCGGCCAGCGAGGAGAACCAGGCGGCGGACGAGGAGGAGGAGGAGGAGGA
CAGCGATGACGCAGAAAACCAGCGCAAGAAGCAGCCTGTGTCAGCAAGTA
TGTTGAAGCCTGGGAGGTTAGAGTCGAATGAGTACGGGTGACAAAAAAAC
GGCGTGTTCTTTTTCCTTCTTGCGTTATCTATGAACCATCGCTTTTCTCT
CTTTGCTTTCTCCCACGTCCCCCCGCAAACCTGAACTCGCCTGACGAGTG
TCTTTGAGTCTCACGCTCTCCTCGTTGCGCTTGCGAATTCTGATTGGAGC
AAGGTCGAGGAGAGGAGTCTGAAGAAGATAACTATTGCATGAGCATGCAG
GATTCGGACGATGAGGAAGAGACCGACGAGGCGGCTGTCCAATACATGCG
TGGTGCTTTCGAGGATGTTCCGGTGAGAATGGCAGTGCATATTGTTGCCT
GCCCGCACATTTCAGACATCATGCAGCCAATGTTTCCTTTTGGTGTGACC
TCGCATAGTCAGACTGGCACGAGTTGTTTCACTTGTGTTTCATAACCATC
GCAACGAGAGCCTGTTTGGGATGATATTTTTAATCGCTTTTATCTTTTGT
TTGTCCGCGGCCGTGTGGTTGACGATGAAGCAGAATGCTGGCAAGGTCAA
CGAGCTGGCCCAGAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig95:301723..303687-

>mRNA_P-littoralis_Contig95.78.1 ID=mRNA_P-littoralis_Contig95.78.1|Name=mRNA_P-littoralis_Contig95.78.1|organism=Pylaiella littoralis U1_48|type=CDS|length=393bp|location=Sequence derived from alignment at P-littoralis_Contig95:301723..303687- (Pylaiella littoralis U1_48)
ATGTTGGCCCCCCGCTGCTGCCCACTTCCATCACGCTCGCACGCGACCAA
GGACGCGACGACCGCGACGCCAACTTCTGATCTACCTGCTGTACGCGCTA
CCATCAGTACGAGTGAGACTCTGTGCCAGGGCAGAGTTTTGTTTTTTCAC
GGTCGAGGAGAGGAGTCTGAAGAAGATAACTATTGCATGAGCATGCAGGA
TTCGGACGATGAGGAAGAGACCGACGAGGCGGCTGTCCAATACATGCGTG
GTGCTTTCGAGGATGTTCCGGTGAGAATGGCAGTGCATATTGTTGCCTGC
CCGCACATTTCAGACATCATGCAGCCAATGTTTCCTTTTGGTGTGACCTC
GCATAGTCAGACTGGCACGAGTTGTTTCACTTGTGTTTCATAA
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