mRNA_P-littoralis_Contig95.75.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig95.75.1
Unique NamemRNA_P-littoralis_Contig95.75.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig95.75.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig95contigP-littoralis_Contig95:301636..302336 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size185
Hectar predicted targeting categoryother localisation
Exons2
Cds size183
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791860.7432554-CDS-P-littoralis_Contig95:301636..3017541680791860.7432554-CDS-P-littoralis_Contig95:301636..301754Pylaiella littoralis U1_48CDSP-littoralis_Contig95 301637..301754 -
1680791860.7555866-CDS-P-littoralis_Contig95:302271..3023361680791860.7555866-CDS-P-littoralis_Contig95:302271..302336Pylaiella littoralis U1_48CDSP-littoralis_Contig95 302272..302336 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig95.75.1prot_P-littoralis_Contig95.75.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig95 301637..302336 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig95.75.1

>prot_P-littoralis_Contig95.75.1 ID=prot_P-littoralis_Contig95.75.1|Name=mRNA_P-littoralis_Contig95.75.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=61bp
SDDAENQRKKQPVSASMLKPGRMLARSTSWPRTLRTISRTVFAGTQIVPC
RWCLREGTPSS
back to top

mRNA from alignment at P-littoralis_Contig95:301636..302336-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig95.75.1 ID=mRNA_P-littoralis_Contig95.75.1|Name=mRNA_P-littoralis_Contig95.75.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=701bp|location=Sequence derived from alignment at P-littoralis_Contig95:301636..302336- (Pylaiella littoralis U1_48)
AGCGATGACGCAGAAAACCAGCGCAAGAAGCAGCCTGTGTCAGCAAGTAT
GTTGAAGCCTGGGAGGTTAGAGTCGAATGAGTACGGGTGACAAAAAAACG
GCGTGTTCTTTTTCCTTCTTGCGTTATCTATGAACCATCGCTTTTCTCTC
TTTGCTTTCTCCCACGTCCCCCCGCAAACCTGAACTCGCCTGACGAGTGT
CTTTGAGTCTCACGCTCTCCTCGTTGCGCTTGCGAATTCTGATTGGAGCA
AGGTCGAGGAGAGGAGTCTGAAGAAGATAACTATTGCATGAGCATGCAGG
ATTCGGACGATGAGGAAGAGACCGACGAGGCGGCTGTCCAATACATGCGT
GGTGCTTTCGAGGATGTTCCGGTGAGAATGGCAGTGCATATTGTTGCCTG
CCCGCACATTTCAGACATCATGCAGCCAATGTTTCCTTTTGGTGTGACCT
CGCATAGTCAGACTGGCACGAGTTGTTTCACTTGTGTTTCATAACCATCG
CAACGAGAGCCTGTTTGGGATGATATTTTTAATCGCTTTTATCTTTTGTT
TGTCCGCGGCCGTGTGGTTGACGATGAAGCAGAATGCTGGCAAGGTCAAC
GAGCTGGCCCAGAACATTGCGAACCATATCGAGGACGGTCTTCGCGGGGA
CACAGATCGTGCCGTGTCGGTGGTGCTTGAGAGAGGGGACGCCCTCTTCA
A
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig95:301636..302336-

>mRNA_P-littoralis_Contig95.75.1 ID=mRNA_P-littoralis_Contig95.75.1|Name=mRNA_P-littoralis_Contig95.75.1|organism=Pylaiella littoralis U1_48|type=CDS|length=183bp|location=Sequence derived from alignment at P-littoralis_Contig95:301636..302336- (Pylaiella littoralis U1_48)
AGCGATGACGCAGAAAACCAGCGCAAGAAGCAGCCTGTGTCAGCAAGTAT
GTTGAAGCCTGGGAGAATGCTGGCAAGGTCAACGAGCTGGCCCAGAACAT
TGCGAACCATATCGAGGACGGTCTTCGCGGGGACACAGATCGTGCCGTGT
CGGTGGTGCTTGAGAGAGGGGACGCCCTCTTCA
back to top