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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Model size | 3462 |
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Cds size | 579 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1680791857.718951-UTR-P-littoralis_Contig942:94415..96950 | 1680791857.718951-UTR-P-littoralis_Contig942:94415..96950 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig942 94416..96950 - |
| 1680791857.758987-UTR-P-littoralis_Contig942:98883..99231 | 1680791857.758987-UTR-P-littoralis_Contig942:98883..99231 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig942 98884..99231 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1680791857.7304666-CDS-P-littoralis_Contig942:96950..97297 | 1680791857.7304666-CDS-P-littoralis_Contig942:96950..97297 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig942 96951..97297 - |
| 1680791857.7442293-CDS-P-littoralis_Contig942:98651..98883 | 1680791857.7442293-CDS-P-littoralis_Contig942:98651..98883 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig942 98652..98883 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig942.9.1 >prot_P-littoralis_Contig942.9.1 ID=prot_P-littoralis_Contig942.9.1|Name=mRNA_P-littoralis_Contig942.9.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=193bp
MSSSITSTSSTSCPAEWQSCQSDDSCTACVVEYLEAVDGCTSGYGSSYTC
NELDEVLCCSITGGDDCADNSVLQDYFGCVLEEYCVIDLGTCTSSGASTT
SSRGISDSDSTTKDDDSSSRGISDSDSTTTVDDSAFNPIGAIGGSDDSDK
DDDGDGEDADATNTGESSAPPSVVTMTTGAAVLVAVVAAFNL* back to topmRNA from alignment at P-littoralis_Contig942:94416..99231- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-littoralis_Contig942.9.1 ID=mRNA_P-littoralis_Contig942.9.1|Name=mRNA_P-littoralis_Contig942.9.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4816bp|location=Sequence derived from alignment at P-littoralis_Contig942:94416..99231- (Pylaiella littoralis U1_48)
CGTTCAGCTTCCGCACCCTTTCTTGTTGTCGAGACATTGTGTTTGCAATA
GCCTTCTTACCCTCGTACGAACTCTGTCCTTCTCACGGTTCTTTTCACAC
AAAAAAGCATAAACCGCATTTGTCACACTCGCCATGTTTGCGTACAACCC
TTGTCTTCCATTTTTCTCGGTGACTCTGTTGACCTCCTCCTTCTGTTTTT
TGTGTTGTCACACCTGTTTGGTGCCCCTTCCTGTCGGCTAGGTTGCGTTT
TCGAAGAATATTGTGTCATTGACCTCGGCACGTGCACGAGCAGCGGTGCT
TCCACGACCTACATTTCTTCCGACACCTTGACGACCGCTGCGGATGACAT
GAGCTCCAGCATCACTTCGACCAGCAGCACATCATGCCCCGCCGAATGGC
AGTCTTGCCAATCAGACGATTCCTGCACAGCATGCGTTGTGGAATACCTC
GAAGCAGTCGATGGTTGCACTAGCGGCTACGGCTCTAGTTATACCTGCAA
TGAATTGGATGAAGTCTTGTGCTGCTCAATCACCGGTGGGGACGACTGCG
CGGACAACTCTGTGCTCCAAGACTATTTCGGTGCGTGTCTCGTTGGATTC
ATCGGCATGTGTGCTTTCGAACCACATGGGATATCGGTTGTTGAGGGAAA
CAACTCCAACAACCGTACAGGCTGGTTCACGGTAGAACCAGGAAATTTAC
CCCCCGGTCATTTCTCACGCGGTTTTTACGAGTCAGACCCTGAGATTTTG
CACACATGTACTATGGGTCACTGCGCAACTTTGAATGAATTGGCCTTTTA
TGTTTTTCTTCCACCAGATATCTGGTGTCCTAGGTTTATGGGGTCTTTTT
TGGTCAACTTGGTCGACTGGGACCCCAGATAATTGGTGAAAGAAAACAAA
ACAAAACAAAAGGGCCAATTTATCCAAAGTTGAAGAGTGACATGTGTGCA
AAATTTCAGGGTCTGACTCGTAAAAACGCGTGAGAAATGACCGGGGAGTA
AAATGTACTACTATATAAACCCTAATTGAATTTAGCATGGAATCGGCTAT
TCTAAGGGTTTCGTAGCCAAACTATGTCAGTTGTTGAGGAATCTCGAAGC
CAGAAATCGTGAACGCCTTCCTCAAGACCCAGAGAGGCCATACATGTTCG
AAAAAAGTATATATCTCGATTTTGTATATCATAGCATCTATAGTGTTGAA
AGCCTGATTTGGGGGGTGTTATATCAGGTCATTCTGTGAAAATAACACAT
TTTCGACCCTAGCGCCACCACTGAAGCTTTAAACAAAAATCCAAGCGGTC
TTTTGCTGTTGATGGCGGTCAGTTTGATACCAAAGTTGTCCAGATTGGGT
AATAATTGCGTTCGGGGGATTGCATGGGGACAAAATGTGGGGATTTCACA
GTGAAGCAGCTCGTAGTGGGTATTGAAACATCAAACGCTGCTTGCTGTGC
TGCCCGCAACCATGTTTTTGGGGCACGTTTGTATTGATACAAGCACTCGA
CGATTCGACATGACAGTCGCGCGGTGGTATTGGTCGCGGCGCGTCGCCGA
ACATGCACTCTACCTGGTTTTATTCATTTTTCCTAACGTCGCATCATACA
GGCTGCCAGGCGGGCACACCTTGTTCGCCGTGCATATCAGAGAGAGTGTC
ATTGGGAAGACTTAGATTTTCCCGAAGCCTGTCGGAATATAGGTCGTTCA
GCTTCCGCACCCTTTCTTGTTGTCGAGACATTGTGTTTGCAATAGCCTTC
TTACCCTCGTGCGAACTCTGTCCTTCTCACGGTCCTTTCACACAAAAAAG
CATAAACCGCATTTGTCACACTCGCCATGTTTGCATACAACCCTTGTCTT
CCATTTTTCTCGGCGACTCTGTTGACCTCCTCCTTCTGTTTTTTGTGCTG
CCACACCTGTTTGGTGCCCCTTCCTGTCGGCTAGGTTGCGTTCTCGAAGA
ATATTGTGTCATTGACCTCGGCACGTGCACGAGCAGCGGTGCTTCCACGA
CCTCCTCGAGGGGCATCTCCGACTCTGACTCGACGACGAAAGACGACGAT
AGCTCCTCGAGGGGAATCTCCGACTCTGACTCGACAACGACAGTCGACGA
TAGCGCCTTCAATCCTATTGGCGCTATCGGTGGTAGCGACGACTCCGATA
AAGATGACGACGGGGACGGGGAAGACGCTGACGCCACTAACACTGGCGAG
TCTTCCGCCCCCCCTTCCGTTGTCACCATGACCACGGGGGCTGCTGTACT
AGTGGCCGTGGTTGCCGCTTTTAACCTATAATATAAGAGAGTTTTGTCCG
TCGTGAGCAGAACAAGCCGGGAAACCGGGCGTTCTTCTCCCGTATGAAAC
GGTTAGCTTCGTGGGATTCTTACCAGGTACATAAGGAGTACCTGAGCAGA
CGGTAGGACGGTAGCGCCGGTGGCCACAGCAAGCAGTGTGTGTTCACCGC
CCACTTTTTCTCTTTCTAATATGGGGGTCGTAAACGGACGGGATTTCTTT
TCTGTGGGATTGGTGTTCATGTGTGGGTGATACTAGGAATCTGGTGTTGT
CGAATGGGAGCGTGCCATTGGTGAACTTGGTCACACTAGACTCCAGTGTT
CAATATAGTCGGAACTCTCCCAGCTGGTACAGTAAAATGTACACGGAGAC
AGGTTTGAGTGCAAGATGCACGCCAGGTCTAGTCGCCAAGTCGGCGTCAA
GATAGGTTTTCGACCTTTACGAAAAACGCTCTCACCCGTGGCTCAATAAA
CCGATGGTCACGAGGGAGTTCGAAATGACACAGGACCCGTGGCTCAATAA
ACCGATCGTCACGAGGGAGTTCGAAATGACACAGGGCACACGCTACCTTT
GAAGAGGTTTCGGTTGTACTCGAAGCGAAACTCATACGAAGGGAAACATG
AGTGGTGCTTTTTCTAAATGAAGGGTTCCCATGGGAAAGCACGGCGAAGC
AAAATCGATGTGATCCTCATTTAGACGTCACAGCTCCCAAGTCCACACGA
GCATGGATACGTTGTGACACTCCTGCCCCCCTTCGGCAGACAGCAAACAT
CCCCAAGTAATTTTTAGGACTACGCTCGACCCAACGTCGGGATAGACTCT
CTGGTACTCGTGCGGCGGTTGGCAGTACAAACCCTGGTACCCGCGTGCAT
ACAGGGAAAATCTTTGTGAAAACCATGTAATTCATCCTCCAACGAATTGG
GCAAGGTTACGGTATCCTCGCGTCTAAACCTACCAGTTCTGCGTACTACT
TTTACGACCAATCCGAGTCTACCCGAACAACTCGTGTTTATTTCCACTCT
ATCCTTCACACCTTCGGCGTATACATCTGTGAGCGTACGAGGAGAGTCAC
GAGGAGAGTCACAGCAAGATTCCGCTCCCTGATCCCGCCGGATTTTCCTC
TGGGGTGCTCGCCTTCAAATTGAGAACCTTTGACATCAATCGCTTTCCAC
TAGGTCGAAGTATATTTAACGAAGAGGAGAATCGTTCACGTGAGGAGTTC
CTACTATACCTCTGTCATGTTGTAGGTGCTGCCCAGAGTAGAAGCGGTGG
GCGAAGAGGGAAATCAGGAGCAAACGGAGACTTGCTGCGCATTCTCTTGC
CGTTGGGAAATATTGGTTTTCTTGTGATATCTATTTCTAAAAGATACCAG
GTATGTATGTGTCAATAGTGTATTGGTGGTGCGAGTTTTTCTGCTTTCAT
TGCACGTGGTTTAGCTTGAGACTCAATGGGGGGAAGGTGTTTTCGTGTTT
TTGGGTCCTTATTATATTGGATTTAATGGTGAAATATTTTCCGCCCTAGC
AGCGCCCCCTTAAACGTGTACGTGCAGTAGAAAAACCACCAAATCTTTAT
CTTACATCTGCGTATTCAGGTACGGGTATCTCTTGTTGAGTAATTGCAGG
TAGGCGCACGGGGTAGATGCAACCTAGATAGCAATCAAGCCAAGTGTTTG
ATGTATCGGGCATGCTTCATGGACGCTGCTTCACACACGGCAGCGACAGT
AGCTCGGGTGCAAGGCGCAAAGGGGACGCACAGAAGAAAGGATATGGCGT
GGATAAAGCACTCGGTGTTAATGCTTATTTTCTGTTGACCTTGTTGTTGT
CGGCGTTCAATTTCTTGTTAAGGGGTTGACAAAGAGAACATTTCATGAAG
TATTACGGAAATATGCTCGGCCGCAACGCAAGAGTAGACTGCCTGAAATA
CAGGTGTTTTTTTTCTGTGCATTGTGCAGCAAAGCAATACGTGCTCCGCT
CGCCATTGACCACAGAAGTGTGATTCGACGTGCGTACGTATGACTGCGAA
CATTTTTTTCTAAAAACGATCGGTGGTCTGGACGTGTATGGGGCAAATAT
TCATATTTGGCAGCAGATTTGTCGTTGGGTCTTTTGCAGGCGTTGGTCAT
GCCCGTGTTAAATTATGTTTGGGGGAATGCTTGCTTCGTTGGTGTGTGTC
GCATGCATGGCGCAGTTAGTTGTAATCAGTGCTGTACCCATCGCCATTTT
GATCTAACTTTGTAGTGTTTTCATGGTGTGTGCGAATGACCACCACCCCC
CTCCCCGAGTTGGCGCCTGTGGATAAAACTGTTGCCATTTCGAGGCATCG
TCGAAGCTCATTGCGGAAGCCGGCAGTAAGCCAACCCTAAACAATGTGAT
GTTGCCTTTTTGTTCTTTTTTCGAAATATGGTTGGCTTCCTGCCAGCTTT
ACGAACTGCAGCTCGTAACGCATCTACTTAAAAATACATATTGCCGTTAC
TTATCGGTGCCCAGGCCCGTAACAACCATCGCCAATTTGGAACCAATTGT
ACGGCACTTGAAAGCC back to topCoding sequence (CDS) from alignment at P-littoralis_Contig942:94416..99231- >mRNA_P-littoralis_Contig942.9.1 ID=mRNA_P-littoralis_Contig942.9.1|Name=mRNA_P-littoralis_Contig942.9.1|organism=Pylaiella littoralis U1_48|type=CDS|length=579bp|location=Sequence derived from alignment at P-littoralis_Contig942:94416..99231- (Pylaiella littoralis U1_48)
ATGAGCTCCAGCATCACTTCGACCAGCAGCACATCATGCCCCGCCGAATG
GCAGTCTTGCCAATCAGACGATTCCTGCACAGCATGCGTTGTGGAATACC
TCGAAGCAGTCGATGGTTGCACTAGCGGCTACGGCTCTAGTTATACCTGC
AATGAATTGGATGAAGTCTTGTGCTGCTCAATCACCGGTGGGGACGACTG
CGCGGACAACTCTGTGCTCCAAGACTATTTCGGTTGCGTTCTCGAAGAAT
ATTGTGTCATTGACCTCGGCACGTGCACGAGCAGCGGTGCTTCCACGACC
TCCTCGAGGGGCATCTCCGACTCTGACTCGACGACGAAAGACGACGATAG
CTCCTCGAGGGGAATCTCCGACTCTGACTCGACAACGACAGTCGACGATA
GCGCCTTCAATCCTATTGGCGCTATCGGTGGTAGCGACGACTCCGATAAA
GATGACGACGGGGACGGGGAAGACGCTGACGCCACTAACACTGGCGAGTC
TTCCGCCCCCCCTTCCGTTGTCACCATGACCACGGGGGCTGCTGTACTAG
TGGCCGTGGTTGCCGCTTTTAACCTATAA back to top
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