mRNA_P-littoralis_Contig122.152.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig122.152.1
Unique NamemRNA_P-littoralis_Contig122.152.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig122.152.1 vs. uniprot
Match: D7FKI9_ECTSI (Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKI9_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 8.930e-15
Identity = 34/44 (77.27%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:   52 MAVPGIPGKSIHIAAMDGDVSAVQRWLDAGNFVDKRDGAERTGL 183
            MAVPG  GKS+H+A MDGD +AVQRWLDAGNFVDKRD + RTGL
Sbjct:    4 MAVPGTQGKSLHLACMDGDAAAVQRWLDAGNFVDKRDSSGRTGL 47
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig122.152.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FKI9_ECTSI8.930e-1577.27Chain A, 4ank: A Designed Ankyrin Repeat Protein W... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig122contigP-littoralis_Contig122:450550..453398 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FKI9
PFAMsAnk_2,NACHT
Model size302
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.46e-15
EggNOG OGsCOG0666@1|root,KOG0504@2759|Eukaryota
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-12_001890.1
Descriptionprotein ubiquitination
Cds size300
COG categoryI
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789524.9462712-CDS-P-littoralis_Contig122:450551..4506381680789524.9462712-CDS-P-littoralis_Contig122:450551..450638Pylaiella littoralis U1_48CDSP-littoralis_Contig122 450552..450638 -
1680789524.9583414-CDS-P-littoralis_Contig122:451035..4511251680789524.9583414-CDS-P-littoralis_Contig122:451035..451125Pylaiella littoralis U1_48CDSP-littoralis_Contig122 451036..451125 -
1680789524.9712255-CDS-P-littoralis_Contig122:453275..4533981680789524.9712255-CDS-P-littoralis_Contig122:453275..453398Pylaiella littoralis U1_48CDSP-littoralis_Contig122 453276..453398 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig122.152.1prot_P-littoralis_Contig122.152.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig122 450552..453398 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig122.152.1

>prot_P-littoralis_Contig122.152.1 ID=prot_P-littoralis_Contig122.152.1|Name=mRNA_P-littoralis_Contig122.152.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=100bp
VRSNPALEVLSTTTFIAMAVPGIPGKSIHIAAMDGDVSAVQRWLDAGNFV
DKRDGAERTGLHQASWSGRIEVVSLLLGAYADVNAQDKQQRTPLHLCSEL
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mRNA from alignment at P-littoralis_Contig122:450550..453398-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig122.152.1 ID=mRNA_P-littoralis_Contig122.152.1|Name=mRNA_P-littoralis_Contig122.152.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2849bp|location=Sequence derived from alignment at P-littoralis_Contig122:450550..453398- (Pylaiella littoralis U1_48)
GTTCGATCGAACCCAGCTCTTGAGGTCTTGAGCACTACCACATTCATCGC
CATGGCTGTCCCAGGAATTCCGGGCAAATCCATCCACATTGCCGCCATGG
ATGGCGACGTCTCTGCGGTTCAGGTGCGACGTATTACACAACGAACACAG
AGGCCTCACAGTAAACAAATACGCACCGGTATTACTTGATGATAATATGT
CATACTTCGACTTTATGTACTGCTGCTGCTGTAAAATTCTGTCCATAGGC
AATACGTAGTACGTGTTACAAAAGAAGTGCAGACGCATTTATTATTACCA
TGTTTTACAGGTGTGTGTATTGTTTTGCTGCACATCGATCCTCTCCTAAA
AGTGAATGTTTTACAGGATACATATTGAACTACACTGAATATCTACGGAG
TATATCATACGACCTTCAAATATTTGATTTTAGAGTCGGCGATAAAATGC
GTGTCAGTCACTACAGTATAGGACGCACTAAAACCACCATCGTCGTCCAA
CCGTTGTTTCGGGGGCCCCAACCCTGTTTTACAGTAGTACACGTGTGTCT
GATGGGTGCTCTGCTCTTCTGGGCGAATTCAAACAATTTTGACTGAAAAA
AGTTTTTTGTTGGTTGAGAGGCGCCCCTGAAAATTGAATTCTTTTCTTTT
CTTTTGTTTATCACGAACACGCAGATCTCAATGTGTTCGCCTCTCGCTAG
ACGAGGATCTAGAGTAGGTTTGTAACGAGCTCATAGACGAAGATATACAC
CTACGTATGTTTCTATAATTCATTAGACAAAAGTAAAAAAAGTGTTTGTG
AAGAGGTGACGTTTCTCGCAGAATAAACAAAACATGTTGGGCCAGAAGTT
AAACATGGGCTCGGTTAAGGGCTTTGCACAAATACAAATTAATTTCGACG
GGGGGGGGGTCATATCGAATTACGGGTTTTTGGGAGCTTTTCATTTTGTT
TTGCTCTCTATTTAGGCGGCCGTGGATAAAGTACTGTGGGTACGGGGCAC
TACATGGTGATCTACGGGGCCCATGAGGTATATATGATGAGACAAGTCGT
CTCACTCTTTAATATACAAGGTAACGGGCTCAACCTTTCTCCGCTCGCGC
GTCTGACAACGGGCTGTCCGTGCCCCTAACACGATCGATCGATCGACCGT
GTTTGGGCAGGGATAGGTCCTAGTCAGAAGCGCGAGCCAAGGAAGGTTGA
CCTCAAGACCTTGTCTGTTGAAGAGTGAGACGATTGTCTCATCACACGTA
TACCCCAGGGGCCCCGTAAATCAATGTCGAGTACCGAGAAGGGTGGGCTA
TTTGGGGCACCCGGCACTAGATACTGATCTGCGGGCACTCGGCACTGAAT
TGCGGGGACCCTGGGGTATATGTGACGAAACAACTCGTGTCACTCTTTTG
TAAACAAGGTCTTGGGGTCAAGCACTCTTCGCTCGTGCTTCTGACAAAAG
GAGCTGCCCGTGCCCTTCACAAAGACCATCTCCGTCCCTTTTTACGAACG
CTTGGGACCAACCAGGCGTGTAAACCAGCTATATTTCGCGTCCAATAATT
TTGTTCGTCGGTTATACACACGAGGAGAACAGTATAGCATCACGCAAACG
TAATCAGCAGATGTCCCTGTTTGGTACAACTTCGTTTCTGTAGCTACCTG
CTGTGCAGATATGTCAAGACATTGGACGCCACTCGCCCACCACATCCATC
CGTAGGCTGTGGCAGCTTTGAGCAGTGTGGTTGCATGTGACGTCCTTGCG
CTGTGCACAAGGGAAGTTTAGTTTCGTGAGGGCTGTTCACCAATTTTCAT
GCGGGAAGATGTTGCTCGGAACCAAAACCGTGAGCATCTCAATGTCGCAC
TTCAAAGCCCCCTTTGACAGGCTGCAGAGATGTAACCAGGGATTTTTCGA
CCGATCAAAATTTTCCATAAAAAACTGATTGATCAGAAAACATCAGGCAC
CTTTAGTTTCTCTCTTTACTAAGGTCATGGGTGTTGCGCTCTGCTAAGGC
TTCAACAAAATACCGAAAAAGGCAGAAAATGGCCCTAATTCTTGCAGATT
GTCGACCCCGTCAGAAAAGCGTCCTGCTCATAAACTTCAGACTCGATATT
CGATTCAGTAGATACCCCGTGGTAAAACGCCTCCCAGAGATTTTCTTCAC
GATACTCTCTAGAGGGTGGAAAGGGTCGACTTTTTCGGTTTCCGTACTCT
GTATTCGTATGTGAAGTGTAGGTTCTTTATGGCACATATCCATCACAGCA
CCATCGCTGCCCTCTGACTCCAGCGGTGGCTGGATGCAGGCAACTTTGTG
GACAAACGAGATGGCGCTGAAAGAACGGGACTCCACCAAGCCAGTTGGAG
TGGCAGAATAGAGGTAGGGAAAACACAACTCAGTGTAGGTACCTTGCTGA
GGACTTGTCTTGACTGCGGCGGTGTAACGTATGGAACGTTTACGTGCGTT
AGGTTAACACGGCAGGTTAATAAAGCTGGATACTGCAATTAGTTTGACAG
CAGAAACACGTGCAACAATCACTGCTTCCAACCCTCCACTTCGCTATGAG
CGAAAACGCCATTTCATATATATTTAGGTGAAATATTGTACTTGTTCGCT
CCAGCAAGTATCCCCCCGCACGAGCACCGTGCAATGTTACACCGTGTGGT
ATTGCCCCATGTCGGTCGGCATGTTTTTCGCCCCCCCCCTTCTTCGATCC
GTTCCTAGGGCAAAATCTATTTCTCGGCGTTTGCTGTCTCTTCGTGGCTA
TCCAAACAAGGTCGTCAGTCTCCTGCTTGGGGCGTATGCGGACGTGAATG
CGCAAGACAAGCAGCAGAGAACGCCTCTGCATTTGTGCAGCGAATTGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig122:450550..453398-

>mRNA_P-littoralis_Contig122.152.1 ID=mRNA_P-littoralis_Contig122.152.1|Name=mRNA_P-littoralis_Contig122.152.1|organism=Pylaiella littoralis U1_48|type=CDS|length=300bp|location=Sequence derived from alignment at P-littoralis_Contig122:450550..453398- (Pylaiella littoralis U1_48)
GTTCGATCGAACCCAGCTCTTGAGGTCTTGAGCACTACCACATTCATCGC
CATGGCTGTCCCAGGAATTCCGGGCAAATCCATCCACATTGCCGCCATGG
ATGGCGACGTCTCTGCGGTTCAGCGGTGGCTGGATGCAGGCAACTTTGTG
GACAAACGAGATGGCGCTGAAAGAACGGGACTCCACCAAGCCAGTTGGAG
TGGCAGAATAGAGGTCGTCAGTCTCCTGCTTGGGGCGTATGCGGACGTGA
ATGCGCAAGACAAGCAGCAGAGAACGCCTCTGCATTTGTGCAGCGAATTG
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