mRNA_P-littoralis_Contig942.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig942.4.1
Unique NamemRNA_P-littoralis_Contig942.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig942.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig942contigP-littoralis_Contig942:36837..41024 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size388
Hectar predicted targeting categoryother localisation
Exons2
Cds size384
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791857.6659596-CDS-P-littoralis_Contig942:36836..369181680791857.6659596-CDS-P-littoralis_Contig942:36836..36918Pylaiella littoralis U1_48CDSP-littoralis_Contig942 36837..36918 +
1680791857.6779814-CDS-P-littoralis_Contig942:40720..410221680791857.6779814-CDS-P-littoralis_Contig942:40720..41022Pylaiella littoralis U1_48CDSP-littoralis_Contig942 40721..41022 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig942.4.1prot_P-littoralis_Contig942.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig942 36837..41022 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig942.4.1

>prot_P-littoralis_Contig942.4.1 ID=prot_P-littoralis_Contig942.4.1|Name=mRNA_P-littoralis_Contig942.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=128bp
DELDEVLCCSITGGDDCADNSVLQDYFGCVFEEFCVVDVGTCTSSGASTT
SSRGISDSDSTTADDDSSSRGISDSDSTTTADDGAVNPIGAIGGNDDSDE
DDDGDGEDADATNTGESSAPPSVVTMTT
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mRNA from alignment at P-littoralis_Contig942:36837..41024+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig942.4.1 ID=mRNA_P-littoralis_Contig942.4.1|Name=mRNA_P-littoralis_Contig942.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4188bp|location=Sequence derived from alignment at P-littoralis_Contig942:36837..41024+ (Pylaiella littoralis U1_48)
GATGAATTGGATGAAGTCCTGTGCTGCTCAATCACCGGGGGGGACGACTG
CGCGGACAACTCTGTGCTCCAAGACTATTTCGGTGCGTGTCTCGTTGGAT
TCATCGGCATGTGTGCTTTCGAACCACATGGGATATTGGTTGTTGAGGGA
AACAACTCCAGCCACCGTACAGGCTGGTTCACGGTAGAACCAGGAAATTT
ACTCCCCGGTCATTTCTCACGCGGTTTTTACGAGTTAGACCCTGGAATTT
CGCACACATGTACTATGGGCCACTGCGCAACTTTGAATGAATTGGCCTTT
TGTTTTTTTCTTTCACCAGATATCTGAGCTCCTAGGTTTATGGGGTCTTT
TTTGGTCGACTTGGTCGACTTGGACCCCAGATATTTGGTGAATTGAATTT
AGCTTGAAATCAGCTATTTTAAGGGTTTCGTAGCCAAACTACGTCAGTTT
TTGAGGAACCTCGAAGCCAAAAATCAGCTATTTTAAGGGTTTCGTAGCCA
AACTACGTCAGTTTTTGAGGAACCTCGAAGCCAAAAATCGTGAACGCCTT
CCTTAAGACCCAGAGAGACCATGCATGTTCGAAAAAAGTATATATCTCGA
TTTCATATGTATCATAGCATCTATAGTGTTGAAAGCCTGATTTTGGGGTG
TGTAAAATCACGTTATTCTGTGAAAATGACACATTTTCGACACTAGCGCC
ACCACTAAAGCGTTAAACAAAAATCCAAGCGGCGTTTTGCTGTTGATGGC
GGTCAGTTTGATGCCAAAGTTGTCCAGATTGGGTAATTGTTGCGTTCGGG
ATTGCATGGGGACAAAATTCGGGGATTTCACAGTGAACCAGCTCGTAGTG
GGTATTGAAACATCAAACGCTGCTTGCTGGGCTGCCCGCAAATATGTTTT
TGGCGCACGTTTTTATGAATATATAAGCACTCGACGATTCGACATGACAG
TCGCGCGGTGGAATTGGTCGCGGCGTGTCGCCGAACAAGCACTCTACCTG
GTTTTATTGATTATTCCTAATGTTGCATCATACAGCGGAGTACCGCAAGC
TTCGGTCAGCCCACCACTTCTTCCTCCTTCGCTGCATCGGATGGAAAAAG
AGGGAGAGAACAGACCGACCCCTCTCCTACGCCGAAGCCCTGATCACCGC
GGGTTGCGACGAGAGCACTGAGGCCACCGTGCGCAAGCGGCTACTGTGCT
TCGCAGGATTAGTTGCGCGCATGAGAGACGAGAGACTCCCGAAAATTGCT
CTTTTGGGAGAATTGCAGGGGGGAGCGAGGTATCTGGGGGGGCAAGAGTT
TGACTGGCTGAAGCAAATGCAGGAGAACCTTGAAGCGTTCGACATCGTTG
TCGACAAAAATGAGGGGTGGGAGGCAAGTGCCAAGAGAGCTGACGAGTGG
TACGACAGGATCGACGAGGGTGCGCGGCGGTTCAAGGACGAGTGGCTCAA
GAAAGAGGGAGTCTTATCAGAGACACGTCGACGGAAAAGGGAGAGGGACG
CGGCTGAGGGGCAGGCCTTAGCCACAAGAGGGAGAACGGATGGCGGGGAT
AAACGAGAGGAGGAGTACGGGGGGGCACAAGGGCAGCGGGGTAGTGGGGT
TGGAGTTGCACAGCACATGAAGAAGCAGCCCAAAGCCAAGCTACGGGGTG
ACTGGAGTGGAAAACCTGTAGGGCGGAATGGTGGTGTAGCTGCTGCCAAA
GATGTGGGGCAGAAACAACTGGGTACGGTGGTGCCAGTAGCAGGAGGCAT
GAGTGCGACTGAGGAGAGCAAGCGTGAACAGGCAGACCTCGTGGCAAGAC
ATGTTTGCGATTGATTGCATGCCTTTTATTTTATTTTATTACACCCCCCT
CCCCCCCCCCCGACTTCCGGTACTTCCGGTCTTTCCTCTGCACCCTCCAC
GTATGTATGTATTTTATTTTATTCCTCTTTGTCTCTTTTTTATTTTCCCT
CTCCGTTCCCCTGGGTTTTCTTTGTTTGGCGGCATGTGTGTTGTGTTTGT
GTACGAGTGCACTCCCTCAGTCTTTGTGCCCTCCCTGTATCTTCTTTTTT
ATTTTACGTTTCGTCTCTTGATCATGTAGTTACTGGACCATGCGCCCTGG
TTTGCCTTTGCCTTGGTCTGTCATGGCCCTGGGCCCTGATCCGATGTACG
AAGTACTTCTAAGTATATGGTTATGGTTGAGGTTTGTCTTCTTTTTGTTT
TTTTTTGTACTGTTTTCAATTTTTAATTTTTCTTTCGGGACTGTTATTGT
TTTTCCGTATTTTGTTTGGTACTTTGGCCACCACAGAGTCGTCCCTGAAA
CCAAAAACTATTATTCCATACAAATTCAGTAACAAACCGAAAACCAACCA
AACAACCAAACATCTTCACATACAATGAAAACTCATTTCGTCGTCCCTGA
AACCAAAAACTATTAATTTGGCTTCAGTGACTTGAAGGATCCCAAAATTT
CTACTTCTTCACGACATTGACTGTCGAGTCTTGTTGGTTGTAAAACGTTT
GTCGTCCCTGAAACCAAAAACTATTAATCCATACAAATTCAGTAACAAAC
CGAAAACCAACCAAACAACCAAACATCTCTACATACAATGAAAACTCATT
TTGTCGTCCCTGAAACCAAAAACTATTAATCCATACAAATTCAGTAACAA
ACCGAAAACCAACCAAACAACCAAACATCTCTACATACAATGAAAACTCA
TTTTGTCGTACCTGAAACCAAAAACTATTAATTTGGCTTCAGTGACTGAA
GGATCCCAAAATTTCTACTTCTTCACGACATTGACTGTCGAGTAATAATG
TTCGAAGGGATGTTTGGTTGTTTGGTTGATTTTCGGTTTGTTACTGAATT
TGTATGGATTAATAGTTTTTGGTTTCAGGGACGACAAAGAAGTATATGGT
TATGGTTGAGGTTTGTCTTGTTTTTTTTCTTGTTTGCCGTACTGTTTCCA
ATTTTAGTTTTTTCTTTCGAACCTGTTCTTTTTTTTCTGTATTTTGTTTG
GTACTTTGGCCACCACAGATGGAACTTCTGAGGTGATTAAAAATATTGAC
TAGGAGGTAGATGGGAGGTATGTAGAGATGTTTGGTTGTTTGGTTGATTT
TCGGTTTACTACTGAATTTGAATGGATTAATAGTTTTTGGTTTCAGGGAC
GACACGAATCTGGTTTTACTAACAGCATAGCCGCTTTCAAAGGAGCAAAG
GAACACATTCACCGGAAGCGAACCCCCGTTCCTCTGCATCTAGTGGTTAA
CGAGGGGACCACTAGTCCACCGGGGCGACCGATGTGATTAGAGATGTTTG
GTTGTTCGGTTGATTTTCGGTTTGTTACTGAATTTGTATGGATTAATAGT
TTTTGGTTTCAGGGACGACAAATGGTACCCCAACGGTACCATATCTGATT
TGACTATGGGTGATCAAGTCCATTTATCTTCTTCTCATATTTTTCCTCCT
AGCTAGCACGATATGTGCCTGGTTTGTGACCACGGGCTAGACTGCGGCGG
TAGTGAGCTGATGTGAGAATCAACAACAACAACAACAACAACAACAGGCC
GCCAGGCGGGCACGCCTTGTTCGCCGTGCATATCAGAGAGGGTGTCATTG
GGAAGACTTAGATGTTTTTTGCCGAAGCTTGTCGGAATATTGGTCGTTCA
GCTTCTGCACCCTTTTGCGTTTTCGAGACATTGTGTCTGCAATAGCCTTC
TCACCCTCGTGCGAATTCTGTCCTTCTCACGGTTCTTTCACACAAAAAAG
GATAGACCACATTTGTCACACTCGACATGTTTCCATACAACTCTCGTCGT
CAATTTTTCTCGGCGACTCTGTTGACCTCATCCTTCTGTTCTTTGTGTTG
TCACACCTGTTTGATGCCTCTCCCTGTCGGCTAGGTTGCGTTTTCGAAGA
ATTTTGTGTCGTTGACGTCGGCACATGCACGAGCAGCGGTGCTTCCACGA
CCTCCTCGAGGGGCATCTCCGATTCTGACTCGACGACGGCAGACGATGAT
AGCTCCTCGAGGGGCATCTCCGACTCTGACTCGACAACGACAGCCGACGA
TGGCGCAGTCAATCCTATTGGCGCTATCGGTGGTAACGACGACTCCGATG
AAGATGACGACGGGGACGGGGAAGACGCTGATGCCACCAACACTGGCGAG
TCTTCCGCCCCTCCTTCCGTTGTCACCATGACCACGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig942:36837..41024+

>mRNA_P-littoralis_Contig942.4.1 ID=mRNA_P-littoralis_Contig942.4.1|Name=mRNA_P-littoralis_Contig942.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=384bp|location=Sequence derived from alignment at P-littoralis_Contig942:36837..41024+ (Pylaiella littoralis U1_48)
GATGAATTGGATGAAGTCCTGTGCTGCTCAATCACCGGGGGGGACGACTG
CGCGGACAACTCTGTGCTCCAAGACTATTTCGGTTGCGTTTTCGAAGAAT
TTTGTGTCGTTGACGTCGGCACATGCACGAGCAGCGGTGCTTCCACGACC
TCCTCGAGGGGCATCTCCGATTCTGACTCGACGACGGCAGACGATGATAG
CTCCTCGAGGGGCATCTCCGACTCTGACTCGACAACGACAGCCGACGATG
GCGCAGTCAATCCTATTGGCGCTATCGGTGGTAACGACGACTCCGATGAA
GATGACGACGGGGACGGGGAAGACGCTGATGCCACCAACACTGGCGAGTC
TTCCGCCCCTCCTTCCGTTGTCACCATGACCACG
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